Species of Hypomyces and Nectria Occurring on Discomycetes Author(S): Clark T
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
<I>Hypomyces</I> and Its Original Species
MYCOTAXON Volume 108, pp. 185–195 April–June 2009 The correct authorship of the genus Hypomyces and its original species S.R. Pennycook [email protected] Manaaki Whenua Landcare Research Private Bag 92 170, Auckland, New Zealand Abstract — Historically, the abbreviation ‘Tul.’ was used indiscriminately to indicate authorship by L.-R. Tulasne as sole author and by L.-R. & C. Tulasne as joint authors. This ambiguity continues to result in misattribution of many names for which the author has previously been designated as ‘Tul.’, for example the genus Hypomyces. Linguistic analysis of numerous papers published by the Tulasne brothers confirms that they were joint authors of the protologue of the genus Hypomyces and its original 18 species. Therefore, using modern standard botanical author abbreviations, these names should be attributed to ‘Tul. & C.Tul.’, and not to ‘Tul.’ Key words — nomenclature, Nees, Saccardo, Sydow, Hypomyces lactifluorum Introduction In the past, authors of taxonomic names have frequently been indicated by a miscellany of non-standardised—and often ambiguous—abbreviations. The publication of a comprehensive list of unambiguous standard botanical author abbreviations by Brummitt & Powell (1992) consolidated and expanded several previous partial lists, and the IPNI Authors website (IPNI 2009) continues to update the list. Nevertheless, there is still potential for error when the old ambiguous abbreviations are interpreted uncritically as if they were modern standard author abbreviations. Old abbreviations -
Two New Species and a New Chinese Record of Hypocreaceae As Evidenced by Morphological and Molecular Data
MYCOBIOLOGY 2019, VOL. 47, NO. 3, 280–291 https://doi.org/10.1080/12298093.2019.1641062 RESEARCH ARTICLE Two New Species and a New Chinese Record of Hypocreaceae as Evidenced by Morphological and Molecular Data Zhao Qing Zeng and Wen Ying Zhuang State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China ABSTRACT ARTICLE HISTORY To explore species diversity of Hypocreaceae, collections from Guangdong, Hubei, and Tibet Received 13 February 2019 of China were examined and two new species and a new Chinese record were discovered. Revised 27 June 2019 Morphological characteristics and DNA sequence analyses of the ITS, LSU, EF-1a, and RPB2 Accepted 4 July 2019 regions support their placements in Hypocreaceae and the establishments of the new spe- Hypomyces hubeiensis Agaricus KEYWORDS cies. sp. nov. is characterized by occurrence on fruitbody of Hypomyces hubeiensis; sp., concentric rings formed on MEA medium, verticillium-like conidiophores, subulate phia- morphology; phylogeny; lides, rod-shaped to narrowly ellipsoidal conidia, and absence of chlamydospores. Trichoderma subiculoides Trichoderma subiculoides sp. nov. is distinguished by effuse to confluent rudimentary stro- mata lacking of a well-developed flank and not changing color in KOH, subcylindrical asci containing eight ascospores that disarticulate into 16 dimorphic part-ascospores, verticillium- like conidiophores, subcylindrical phialides, and subellipsoidal to rod-shaped conidia. Morphological distinctions between the new species and their close relatives are discussed. Hypomyces orthosporus is found for the first time from China. 1. Introduction Members of the genus are mainly distributed in temperate and tropical regions and economically The family Hypocreaceae typified by Hypocrea Fr. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
Tropical Species of Cladobotryum and Hypomyces Producing Red Pigments
available online at www.studiesinmycology.org StudieS in Mycology 68: 1–34. 2011. doi:10.3114/sim.2011.68.01 Tropical species of Cladobotryum and Hypomyces producing red pigments Kadri Põldmaa Institute of Ecology and Earth Sciences, and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia Correspondence: Kadri Põldmaa, [email protected] Abstract: Twelve species of Hypomyces/Cladobotryum producing red pigments are reported growing in various tropical areas of the world. Ten of these are described as new, including teleomorphs for two previously known anamorphic species. In two species the teleomorph has been found in nature and in three others it was obtained in culture; only anamorphs are known for the rest. None of the studied tropical collections belongs to the common temperate species H. rosellus and H. odoratus to which the tropical teleomorphic collections had previously been assigned. Instead, taxa encountered in the tropics are genetically and morphologically distinct from the nine species of Hypomyces/Cladobotryum producing red pigments known from temperate regions. Besides observed host preferences, anamorphs of several species can spread fast on soft ephemeral agaricoid basidiomata but the slower developing teleomorphs are mostly found on polyporoid basidiomata or bark. While a majority of previous records from the tropics involve collections from Central America, this paper also reports the diversity of these fungi in the Paleotropics. Africa appears to hold a variety of taxa as five of the new species include material collected in scattered localities of this mostly unexplored continent. In examining distribution patterns, most of the taxa do not appear to be pantropical. -
Genome Analysis of Hypomyces Perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus Bisporus)
G C A T T A C G G C A T genes Article Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus) 1, 1, 1 1, 1,2, Dan Li y, Frederick Leo Sossah y , Lei Sun , Yongping Fu * and Yu Li * 1 Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China; [email protected] (D.L.); fl[email protected] (F.L.S.); [email protected] (L.S.) 2 International Cooperation Research Center of China for New Germplasm and Breeding of Edible Mushrooms, Jilin Agricultural University, Changchun 130118, China * Correspondence: [email protected] (Y.F.); [email protected] (Y.L.); Tel.: +86-431-8453-2989 (Y.L.) These authors contributed equally to this work. y Received: 4 April 2019; Accepted: 27 May 2019; Published: 29 May 2019 Abstract: The mycoparasitic fungus Hypomyces perniciosus causes wet bubble disease of mushrooms, particularly Agaricus bisporus. The genome of a highly virulent strain of H. perniciosus HP10 was sequenced and compared to three other fungi from the order Hypocreales that cause disease on A. bisporus. H. perniciosus genome is ~44 Mb, encodes 10,077 genes and enriched with transposable elements up to 25.3%. Phylogenetic analysis revealed that H. perniciosus is closely related to Cladobotryum protrusum and diverged from their common ancestor ~156.7 million years ago. H. perniciosus has few secreted proteins compared to C. protrusum and Trichoderma virens, but significantly expanded protein families of transporters, protein kinases, CAZymes (GH 18), peptidases, cytochrome P450, and SMs that are essential for mycoparasitism and adaptation to harsh environments. -
Spor E Pr I N Ts
SPOR E PR I N TS BULLETIN OF THE PUGET SOUND MYCOLOGICAL SOCIETY Number 503 June 2014 WOULD A ROSY GOMPHIDIUS BY ANY OTHER NAME SMELL AS SWEET? Rebellion against dual-naming system gains Many fungi are shape-shifters seemingly designed momentum but still faces a few hurdles to defy human efforts at categorization. The same species, sometimes the same individual, can reproduce by Susan Milius two ways: sexually, by mixing genes with a partner of Science News April 18, 2014 the same species, or asexually, by cloning to produce To a visitor walking down, down, down the white genetically identical offspring. cinder block stairwell and through metal doors into the The problem is that reproductive modes can take basement, Building 010A takes on the hushed, mile- entirely different anatomical forms. A species that long-beige-corridor feel of some secret government looks like a miniature corn dog when it is reproducing installation in a blockbuster movie. sexually might look like fuzzy white twigs when it is in Biologist Shannon Dominick wears a striped sweater cloning mode. A gray smudge on a sunflower seed head as she strolls through this Fort Knox of fungus, merrily might just be the asexually reproducing counterpart of discussing certain specimens in the vaults that are a tiny satellite dish-shaped thing. commonly called “dog vomit fungi.” When many of these pairs were discovered, sometimes This basement on the campus of the Agricultural decades apart, sometimes growing right next to each Research Service in Beltsville, Md., holds the second other, it was difficult or impossible to demonstrate that largest fungus collection in the world, with at least one they were the same thing. -
Chaetothiersia Vernalis, a New Genus and Species of Pyronemataceae (Ascomycota, Pezizales) from California
Fungal Diversity Chaetothiersia vernalis, a new genus and species of Pyronemataceae (Ascomycota, Pezizales) from California Perry, B.A.1* and Pfister, D.H.1 Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Ave., Cambridge, MA 02138, USA Perry, B.A. and Pfister, D.H. (2008). Chaetothiersia vernalis, a new genus and species of Pyronemataceae (Ascomycota, Pezizales) from California. Fungal Diversity 28: 65-72. Chaetothiersia vernalis, collected from the northern High Sierra Nevada of California, is described as a new genus and species. This fungus is characterized by stiff, superficial, brown excipular hairs, smooth, eguttulate ascospores, and a thin ectal excipulum composed of globose to angular-globose cells. Phylogenetic analyses of nLSU rDNA sequence data support the recognition of Chaetothiersia as a distinct genus, and suggest a close relationship to the genus Paratrichophaea. Keywords: discomycetes, molecular phylogenetics, nLSU rDNA, Sierra Nevada fungi, snow bank fungi, systematics Article Information Received 31 January 2007 Accepted 19 December 2007 Published online 31 January 2008 *Corresponding author: B.A. Perry; e-mail: [email protected] Introduction indicates that this taxon does not fit well within the limits of any of the described genera During the course of our recent investi- currently recognized in the family (Eriksson, gation of the phylogenetic relationships of 2006), and requires the erection of a new Pyronemataceae (Perry et al., 2007), we genus. We herein propose the new genus and encountered several collections of an appa- species, Chaetothiersia vernalis, to accommo- rently undescribed, operculate discomycete date this taxon. from the northern High Sierra Nevada of The results of our previous molecular California. -
An All-Taxa Biodiversity Inventory of the Huron Mountain Club
AN ALL-TAXA BIODIVERSITY INVENTORY OF THE HURON MOUNTAIN CLUB Version: August 2016 Cite as: Woods, K.D. (Compiler). 2016. An all-taxa biodiversity inventory of the Huron Mountain Club. Version August 2016. Occasional papers of the Huron Mountain Wildlife Foundation, No. 5. [http://www.hmwf.org/species_list.php] Introduction and general compilation by: Kerry D. Woods Natural Sciences Bennington College Bennington VT 05201 Kingdom Fungi compiled by: Dana L. Richter School of Forest Resources and Environmental Science Michigan Technological University Houghton, MI 49931 DEDICATION This project is dedicated to Dr. William R. Manierre, who is responsible, directly and indirectly, for documenting a large proportion of the taxa listed here. Table of Contents INTRODUCTION 5 SOURCES 7 DOMAIN BACTERIA 11 KINGDOM MONERA 11 DOMAIN EUCARYA 13 KINGDOM EUGLENOZOA 13 KINGDOM RHODOPHYTA 13 KINGDOM DINOFLAGELLATA 14 KINGDOM XANTHOPHYTA 15 KINGDOM CHRYSOPHYTA 15 KINGDOM CHROMISTA 16 KINGDOM VIRIDAEPLANTAE 17 Phylum CHLOROPHYTA 18 Phylum BRYOPHYTA 20 Phylum MARCHANTIOPHYTA 27 Phylum ANTHOCEROTOPHYTA 29 Phylum LYCOPODIOPHYTA 30 Phylum EQUISETOPHYTA 31 Phylum POLYPODIOPHYTA 31 Phylum PINOPHYTA 32 Phylum MAGNOLIOPHYTA 32 Class Magnoliopsida 32 Class Liliopsida 44 KINGDOM FUNGI 50 Phylum DEUTEROMYCOTA 50 Phylum CHYTRIDIOMYCOTA 51 Phylum ZYGOMYCOTA 52 Phylum ASCOMYCOTA 52 Phylum BASIDIOMYCOTA 53 LICHENS 68 KINGDOM ANIMALIA 75 Phylum ANNELIDA 76 Phylum MOLLUSCA 77 Phylum ARTHROPODA 79 Class Insecta 80 Order Ephemeroptera 81 Order Odonata 83 Order Orthoptera 85 Order Coleoptera 88 Order Hymenoptera 96 Class Arachnida 110 Phylum CHORDATA 111 Class Actinopterygii 112 Class Amphibia 114 Class Reptilia 115 Class Aves 115 Class Mammalia 121 INTRODUCTION No complete species inventory exists for any area. -
Two New Species of Discomycetes (Order Pezizales) from Graubiinden, Switzerland
Arctic and alpine Mycology 3. Bibl. Mycol. 150: 17-22. © J. Cramer in der Gebriider Bomtraeger Verlagsbuchhandlung, Berlin-Stuttgart, 1993. Two new species of Discomycetes (order Pezizales) from Graubiinden, Switzerland Henry Dissing Botanical Institute, Department of Mycology and Phycology, University of Copenhagen, 0ster Farimagsgade 2D, DK-1353 Copenhagen K, Denmark Helvetia pulchra and Melastiza tetraspora are described as new species. H. pulchra is a mem• ber of section Macropus. M. tetraspora is compared with the presumably closely related Melastiza chateri. Additional keywords: Ascomycetes, taxonomy, scanning electron microscopy. About 20 alpine and subalpine localities in Graubiinden, Switzerland, were studied in the period of August-September in 1979, 1982 and 1984. A total of 120 species of Discomycetes (order Pezizales), of which ten are new to sci• ence, were collected. Two new species, viz., Chalazion helveticum and Smardaea purpurea, were published by Dissing (1980,1984). In this paper two new soil inhabiting species from Graubiinden, Melastiza tetraspora (family Pyronemataceae) and Helvetia pulchra (family Helvellaceae, section Macropus) are described and ecological data on both species are presented. Material and methods Notes on habit and habitat were taken in Graubiinden, based on fresh mate• rial. Coverslips for SEM microscopy were prepared from fresh material of M. tetraspora and M. chateri. Detailed studies of microscopic characters were performed on dried material revived in tap water overnight. For histology, the revived material was further fixed in 2.5 % glutaraldehyde and treated according to Dissing & Sivertsen (1988). Sections 2-3 um thick were cut on a Reichert-Jung 2050 Supercut microtome. SEM photos were obtained on a Philips Scanning Microscope after coating with gold-palladium alloy. -
Palmer.Pdf (9.029Mb)
UNIVERSITY OF WISCONSIN-LA CROSSE Graduate Studies MORPHOLOGICAL AND MOLECULAR CHARACTERIZATION OF MYCORRHIZAL FUNGI ASSOCIATED WITH A DISJUNCT STAND OF AMERiCAN CHESTNUT (Casianea dentata) IN WISCONSIN A Chapter Style Thesis Submitted in Partial Fulfillment ofthe Requirements for the Degree ofMaster ofScience in Biology Jonathan M. Palmer College ofScience and Health December, 2006 MORPHOLOGICAL AND MOLECULA~RCHARACTERIZATION OF MYCORRHIZAL FUNGI ASSOCIATED WITH A DISJUNCT STAND OF A:MERICAN CHESTNUT (Castanea dentata) IN \VISCONSlN By Jonathan M. Palmer V.le recommend acceptance ofthis thesis in partial fulfillment ofthe candidate's requirements for the degree of Master of Science in Biology The candidate has complewd the oral defense of lht~ thesis. .1 . I <J ~ ~ ::J/;' n '1· /./} Ii ,iii ~!".-/ .i.J i / ~.) __ (",;'~.) .." e.:>i .~~.-~,.:,l-L~:!--.-~g.Q __/-;-+y-<',,,,--::r.;:;.L...><t?:-e:..·_ .... _ Thomas J. VolkV !Yate Thesis Cornmittee Chairperson /--.,.) /f ./v I :'.~~;J2: ~---------. {lldt)/~ .. .t...: Daniel L. Lindner f ---, Date Thesis CO.ITl.lTlittee Member ;1/I ' I -;813 !-"'?,)/}'" __.__. .!+_ ,~. 'UI ,;t, v ...' k Dah.~ l ~ , i~~r-l /t:\1L~ A.·S'ri1.~')(J,"tA !\ ----"'1 t') ~'/ (~Oi /' (",:),A -Yv"l Y~, \n.. .. __ _. \ '--'C., v ~ l' Meredith Thomsen Date Thesis Committee Member Ibe~is accepted Vijendra K. Agarwal, Ph,D. Date Director, University Graduate Studies and Associate Vice Chancellor ABSTRACT Palmer. JJvL Morphological and molecular charactcrization ofmycorrhizal [\UJgi associated with a disjunct stand ofAmerican chestnut (Castanea dentata) in \\7isconsin. 1'.15 in Biology, December 2006. 77 pages (TJ Volk) Circa 1900 a farmer from the eastern U.S. planted eleven American chestnut (Castanea dentata) seeds on a newly established farm near West SaleHI in western Wis(:onsin. -
An Overview of the Systematics of the Sordariomycetes Based on a Four-Gene Phylogeny
Mycologia, 98(6), 2006, pp. 1076–1087. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny Ning Zhang of 16 in the Sordariomycetes was investigated based Department of Plant Pathology, NYSAES, Cornell on four nuclear loci (nSSU and nLSU rDNA, TEF and University, Geneva, New York 14456 RPB2), using three species of the Leotiomycetes as Lisa A. Castlebury outgroups. Three subclasses (i.e. Hypocreomycetidae, Systematic Botany & Mycology Laboratory, USDA-ARS, Sordariomycetidae and Xylariomycetidae) currently Beltsville, Maryland 20705 recognized in the classification are well supported with the placement of the Lulworthiales in either Andrew N. Miller a basal group of the Sordariomycetes or a sister group Center for Biodiversity, Illinois Natural History Survey, of the Hypocreomycetidae. Except for the Micro- Champaign, Illinois 61820 ascales, our results recognize most of the orders as Sabine M. Huhndorf monophyletic groups. Melanospora species form Department of Botany, The Field Museum of Natural a clade outside of the Hypocreales and are recognized History, Chicago, Illinois 60605 as a distinct order in the Hypocreomycetidae. Conrad L. Schoch Glomerellaceae is excluded from the Phyllachorales Department of Botany and Plant Pathology, Oregon and placed in Hypocreomycetidae incertae sedis. In State University, Corvallis, Oregon 97331 the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported Keith A. Seifert clade containing the Boliniales and Chaetosphaer- Biodiversity (Mycology and Botany), Agriculture and iales. Aspects of morphology, ecology and evolution Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada are discussed. Amy Y.