Biomonitoring of Marine Vertebrates in Monterey Bay Using Edna Metabarcoding
RESEARCH ARTICLE Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding Elizabeth A. Andruszkiewicz1, Hilary A. Starks2, Francisco P. Chavez3, Lauren M. Sassoubre1¤, Barbara A. Block4, Alexandria B. Boehm1* 1 Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, United States of America, 2 Center for Ocean Solutions, Stanford University, Stanford, CA, United States of America, 3 Monterey Bay Aquarium Research Institute, Moss Landing, CA, United States of America, 4 Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, CA, United States of America a1111111111 ¤ Current address: Department of Civil, Structural, and Environmental Engineering, University at Buffalo, The a1111111111 State University of New York, Buffalo, NY, United States of America a1111111111 * aboehm@stanford.edu a1111111111 a1111111111 Abstract Molecular analysis of environmental DNA (eDNA) can be used to assess vertebrate biodi- versity in aquatic systems, but limited work has applied eDNA technologies to marine OPEN ACCESS waters. Further, there is limited understanding of the spatial distribution of vertebrate eDNA Citation: Andruszkiewicz EA, Starks HA, Chavez FP, in marine waters. Here, we use an eDNA metabarcoding approach to target and amplify a Sassoubre LM, Block BA, Boehm AB (2017) Biomonitoring of marine vertebrates in Monterey hypervariable region of the mitochondrial 12S rRNA gene to characterize vertebrate com- Bay using eDNA metabarcoding. PLoS ONE 12(4): munities at 10 oceanographic stations spanning 45 km within the Monterey Bay National e0176343. https://doi.org/10.1371/journal. Marine Sanctuary (MBNMS). In this study, we collected three biological replicates of small pone.0176343 volume water samples (1 L) at 2 depths at each of the 10 stations.
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