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Bibliography Database of Living/Fossil Sharks, Rays and Chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the Year 2016
www.shark-references.com Version 13.01.2017 Bibliography database of living/fossil sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the year 2016 published by Jürgen Pollerspöck, Benediktinerring 34, 94569 Stephansposching, Germany and Nicolas Straube, Munich, Germany ISSN: 2195-6499 copyright by the authors 1 please inform us about missing papers: [email protected] www.shark-references.com Version 13.01.2017 Abstract: This paper contains a collection of 803 citations (no conference abstracts) on topics related to extant and extinct Chondrichthyes (sharks, rays, and chimaeras) as well as a list of Chondrichthyan species and hosted parasites newly described in 2016. The list is the result of regular queries in numerous journals, books and online publications. It provides a complete list of publication citations as well as a database report containing rearranged subsets of the list sorted by the keyword statistics, extant and extinct genera and species descriptions from the years 2000 to 2016, list of descriptions of extinct and extant species from 2016, parasitology, reproduction, distribution, diet, conservation, and taxonomy. The paper is intended to be consulted for information. In addition, we provide information on the geographic and depth distribution of newly described species, i.e. the type specimens from the year 1990- 2016 in a hot spot analysis. Please note that the content of this paper has been compiled to the best of our abilities based on current knowledge and practice, however, -
Research Funding (Total $2,552,481) $15,000 2019
CURRICULUM VITAE TENNESSEE AQUARIUM CONSERVATION INSTITUTE 175 BAYLOR SCHOOL RD CHATTANOOGA, TN 37405 RESEARCH FUNDING (TOTAL $2,552,481) $15,000 2019. Global Wildlife Conservation. Rediscovering the critically endangered Syr-Darya Shovelnose Sturgeon. $10,000 2019. Tennessee Wildlife Resources Agency. Propagation of the Common Logperch as a host for endangered mussel larvae. $8,420 2019. Tennessee Wildlife Resources Agency. Monitoring for the Laurel Dace. $4,417 2019. Tennessee Wildlife Resources Agency. Examining interactions between Laurel Dace (Chrosomus saylori) and sunfish $12,670 2019. Trout Unlimited. Southern Appalachian Brook Trout propagation for reintroduction to Shell Creek. $106,851 2019. Private Donation. Microplastic accumulation in fishes of the southeast. $1,471. 2019. AZFA-Clark Waldram Conservation Grant. Mayfly propagation for captive propagation programs. $20,000. 2019. Tennessee Valley Authority. Assessment of genetic diversity within Blotchside Logperch. $25,000. 2019. Riverview Foundation. Launching Hidden Rivers in the Southeast. $11,170. 2018. Trout Unlimited. Propagation of Southern Appalachian Brook Trout for Supplemental Reintroduction. $1,471. 2018. AZFA Clark Waldram Conservation Grant. Climate Change Impacts on Headwater Stream Vertebrates in Southeastern United States $1,000. 2018. Hamilton County Health Department. Step 1 Teaching Garden Grants for Sequoyah School Garden. $41,000. 2018. Riverview Foundation. River Teachers: Workshops for Educators. $1,000. 2018. Tennessee Valley Authority. Youth Freshwater Summit $20,000. 2017. Tennessee Valley Authority. Lake Sturgeon Propagation. $7,500 2017. Trout Unlimited. Brook Trout Propagation. $24,783. 2017. Tennessee Wildlife Resource Agency. Assessment of Percina macrocephala and Etheostoma cinereum populations within the Duck River Basin. $35,000. 2017. U.S. Fish and Wildlife Service. Status surveys for conservation status of Ashy (Etheostoma cinereum) and Redlips (Etheostoma maydeni) Darters. -
Downloaded and Been Reported (Filonzi, Chiesa, Vaghi, & Nonnis Marzano, 2010; Potential Duplicates Eliminated
Food Control 79 (2017) 297e308 Contents lists available at ScienceDirect Food Control journal homepage: www.elsevier.com/locate/foodcont Novel nuclear barcode regions for the identification of flatfish species Valentina Paracchini a, Mauro Petrillo a, Antoon Lievens a, Antonio Puertas Gallardo a, Jann Thorsten Martinsohn a, Johann Hofherr a, Alain Maquet b, Ana Paula Barbosa Silva b, * Dafni Maria Kagkli a, Maddalena Querci a, Alex Patak a, Alexandre Angers-Loustau a, a European Commission, Joint Research Centre (JRC), via E. Fermi 2749, 21027 Ispra, Italy b European Commission, Joint Research Centre (JRC), Retieseweg 111, 2440 Geel, Belgium article info abstract Article history: The development of an efficient seafood traceability framework is crucial for the management of sus- Received 7 November 2016 tainable fisheries and the monitoring of potential substitution fraud across the food chain. Recent studies Received in revised form have shown the potential of DNA barcoding methods in this framework, with most of the efforts focusing 5 April 2017 on using mitochondrial targets such as the cytochrome oxidase 1 and cytochrome b genes. In this article, Accepted 6 April 2017 we show the identification of novel targets in the nuclear genome, and their associated primers, to be Available online 7 April 2017 used for the efficient identification of flatfishes of the Pleuronectidae family. In addition, different in silico methods are described to generate a dataset of barcode reference sequences from the ever-growing Keywords: Bioinformatics wealth of publicly available sequence information, replacing, where possible, labour-intensive labora- DNA barcoding tory work. The short amplicon lengths render the analysis of these new barcode target regions ideally Next-generation sequencing suited to next-generation sequencing techniques, allowing characterisation of multiple fish species in Seafood identification mixed and processed samples. -
Proof-Of-Concept of Environmental Dna Tools for Atlantic Sturgeon Management
Virginia Commonwealth University VCU Scholars Compass Theses and Dissertations Graduate School 2015 PROOF-OF-CONCEPT OF ENVIRONMENTAL DNA TOOLS FOR ATLANTIC STURGEON MANAGEMENT Jameson Hinkle Virginia Commonwealth University Follow this and additional works at: https://scholarscompass.vcu.edu/etd Part of the Animals Commons, Applied Statistics Commons, Biology Commons, Biostatistics Commons, Environmental Health and Protection Commons, Fresh Water Studies Commons, Genetics Commons, Natural Resources and Conservation Commons, Natural Resources Management and Policy Commons, Other Environmental Sciences Commons, Other Genetics and Genomics Commons, Other Life Sciences Commons, and the Water Resource Management Commons © The Author Downloaded from https://scholarscompass.vcu.edu/etd/3932 This Thesis is brought to you for free and open access by the Graduate School at VCU Scholars Compass. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Center for Environmental Studies Virginia Commonwealth University This is to certify that the thesis prepared by Jameson E. Hinkle entitled “ProofofConcept of Environmental DNA tools for Atlantic Sturgeon Management” has been approved by his committee as satisfactory completion of the thesis requirement for the degree of Master of Science in Environmental Studies (M.S. ENVS) _________________________________________________________________________ Greg Garman, Ph.D., Director, Center -
Technical Limitations Associated with Molecular Barcoding of Arthropod Bloodmeals Taken from North American Deer Species
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USDA National Wildlife Research Center - Staff U.S. Department of Agriculture: Animal and Publications Plant Health Inspection Service 2020 Technical Limitations Associated With Molecular Barcoding of Arthropod Bloodmeals Taken From North American Deer Species Erin M. Borland Colorado State University - Fort Collins, [email protected] Daniel A. Hartman Colorado State University - Fort Collins, [email protected] Matthew W. Hopken USDA-APHIS NWRC, [email protected] Antoinette J. Piaggio USDA APHIS Wildlife Services, [email protected] Rebekah C. Kading Colorado State University - Fort Collins, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/icwdm_usdanwrc Part of the Natural Resources and Conservation Commons, Natural Resources Management and Policy Commons, Other Environmental Sciences Commons, Other Veterinary Medicine Commons, Population Biology Commons, Terrestrial and Aquatic Ecology Commons, Veterinary Infectious Diseases Commons, Veterinary Microbiology and Immunobiology Commons, Veterinary Preventive Medicine, Epidemiology, and Public Health Commons, and the Zoology Commons Borland, Erin M.; Hartman, Daniel A.; Hopken, Matthew W.; Piaggio, Antoinette J.; and Kading, Rebekah C., "Technical Limitations Associated With Molecular Barcoding of Arthropod Bloodmeals Taken From North American Deer Species" (2020). USDA National Wildlife Research Center - Staff Publications. 2373. https://digitalcommons.unl.edu/icwdm_usdanwrc/2373 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Animal and Plant Health Inspection Service at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USDA National Wildlife Research Center - Staff Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. -
Aging Techniques & Population Dynamics of Blue Suckers (Cycleptus Elongatus) in the Lower Wabash River
Eastern Illinois University The Keep Masters Theses Student Theses & Publications Summer 2020 Aging Techniques & Population Dynamics of Blue Suckers (Cycleptus elongatus) in the Lower Wabash River Dakota S. Radford Eastern Illinois University Follow this and additional works at: https://thekeep.eiu.edu/theses Part of the Aquaculture and Fisheries Commons Recommended Citation Radford, Dakota S., "Aging Techniques & Population Dynamics of Blue Suckers (Cycleptus elongatus) in the Lower Wabash River" (2020). Masters Theses. 4806. https://thekeep.eiu.edu/theses/4806 This Dissertation/Thesis is brought to you for free and open access by the Student Theses & Publications at The Keep. It has been accepted for inclusion in Masters Theses by an authorized administrator of The Keep. For more information, please contact [email protected]. AGING TECHNIQUES & POPULATION DYNAMICS OF BLUE SUCKERS (CYCLEPTUS ELONGATUS) IN THE LOWER WABASH RIVER By Dakota S. Radford B.S. Environmental Biology Eastern Illinois University A thesis prepared for the requirements for the degree of Master of Science Department of Biological Sciences Eastern Illinois University May 2020 TABLE OF CONTENTS Thesis abstract .................................................................................................................... iii Acknowledgements ............................................................................................................ iv List of Tables .......................................................................................................................v -
Information on the NCWRC's Scientific Council of Fishes Rare
A Summary of the 2010 Reevaluation of Status Listings for Jeopardized Freshwater Fishes in North Carolina Submitted by Bryn H. Tracy North Carolina Division of Water Resources North Carolina Department of Environment and Natural Resources Raleigh, NC On behalf of the NCWRC’s Scientific Council of Fishes November 01, 2014 Bigeye Jumprock, Scartomyzon (Moxostoma) ariommum, State Threatened Photograph by Noel Burkhead and Robert Jenkins, courtesy of the Virginia Division of Game and Inland Fisheries and the Southeastern Fishes Council (http://www.sefishescouncil.org/). Table of Contents Page Introduction......................................................................................................................................... 3 2010 Reevaluation of Status Listings for Jeopardized Freshwater Fishes In North Carolina ........... 4 Summaries from the 2010 Reevaluation of Status Listings for Jeopardized Freshwater Fishes in North Carolina .......................................................................................................................... 12 Recent Activities of NCWRC’s Scientific Council of Fishes .................................................. 13 North Carolina’s Imperiled Fish Fauna, Part I, Ohio Lamprey .............................................. 14 North Carolina’s Imperiled Fish Fauna, Part II, “Atlantic” Highfin Carpsucker ...................... 17 North Carolina’s Imperiled Fish Fauna, Part III, Tennessee Darter ...................................... 20 North Carolina’s Imperiled Fish Fauna, Part -
Endangered Species
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Use of PCR Cloning Combined with DNA Barcoding to Identify Fish in a Mixed-Species Product
Chapman University Chapman University Digital Commons Food Science (MS) Theses Dissertations and Theses Spring 5-28-2019 Use of PCR Cloning Combined with DNA Barcoding to Identify Fish in a Mixed-Species Product Anthony Silva Chapman University, [email protected] Follow this and additional works at: https://digitalcommons.chapman.edu/food_science_theses Recommended Citation Silva, A. (2019). Use of PCR cloning combined with DNA barcoding to identify fish in a mixed-species product. Master's thesis, Chapman University. https://doi.org/10.36837/chapman.000065 This Thesis is brought to you for free and open access by the Dissertations and Theses at Chapman University Digital Commons. It has been accepted for inclusion in Food Science (MS) Theses by an authorized administrator of Chapman University Digital Commons. For more information, please contact [email protected]. Use of PCR cloning combined with DNA barcoding to identify fish in a mixed- species product A Thesis by Anthony J. Silva Chapman University Orange, CA Schmid College of Science and Technology Submitted in partial fulfillment of the requirements for the degree of Master of Science in Food Science May 2019 Committee in charge: Rosalee Hellberg, Ph.D., Advisor Michael Kawalek, Ph.D. Anuradha Prakash, Ph.D. May 2019 Use of PCR cloning combined with DNA barcoding to identify fish in a mixed- species product Copyright © 2019 by Anthony J. Silva iii ACKNOWLEDGMENTS The author wishes to thank Dr. Rosalee Hellberg for being an approachable, helpful, and knowledgeable Thesis advisor. Dr. Michael Kawalek for his help and execution of the project. Dr. Anuradha Prakash for her advice and taking the time to be on my thesis committee. -
Underwater Observation and Habitat Utilization of Three Rare Darters
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 5-2010 Underwater observation and habitat utilization of three rare darters (Etheostoma cinereum, Percina burtoni, and Percina williamsi) in the Little River, Blount County, Tennessee Robert Trenton Jett University of Tennessee - Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Natural Resources and Conservation Commons Recommended Citation Jett, Robert Trenton, "Underwater observation and habitat utilization of three rare darters (Etheostoma cinereum, Percina burtoni, and Percina williamsi) in the Little River, Blount County, Tennessee. " Master's Thesis, University of Tennessee, 2010. https://trace.tennessee.edu/utk_gradthes/636 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Robert Trenton Jett entitled "Underwater observation and habitat utilization of three rare darters (Etheostoma cinereum, Percina burtoni, and Percina williamsi) in the Little River, Blount County, Tennessee." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Wildlife and Fisheries Science. James L. Wilson, Major Professor We have read this thesis and recommend its acceptance: David A. Etnier, Jason G. -
Biomonitoring of Marine Vertebrates in Monterey Bay Using Edna Metabarcoding
RESEARCH ARTICLE Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding Elizabeth A. Andruszkiewicz1, Hilary A. Starks2, Francisco P. Chavez3, Lauren M. Sassoubre1¤, Barbara A. Block4, Alexandria B. Boehm1* 1 Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, United States of America, 2 Center for Ocean Solutions, Stanford University, Stanford, CA, United States of America, 3 Monterey Bay Aquarium Research Institute, Moss Landing, CA, United States of America, 4 Department of Biology, Hopkins Marine Station, Stanford University, Pacific Grove, CA, United States of America a1111111111 ¤ Current address: Department of Civil, Structural, and Environmental Engineering, University at Buffalo, The a1111111111 State University of New York, Buffalo, NY, United States of America a1111111111 * [email protected] a1111111111 a1111111111 Abstract Molecular analysis of environmental DNA (eDNA) can be used to assess vertebrate biodi- versity in aquatic systems, but limited work has applied eDNA technologies to marine OPEN ACCESS waters. Further, there is limited understanding of the spatial distribution of vertebrate eDNA Citation: Andruszkiewicz EA, Starks HA, Chavez FP, in marine waters. Here, we use an eDNA metabarcoding approach to target and amplify a Sassoubre LM, Block BA, Boehm AB (2017) Biomonitoring of marine vertebrates in Monterey hypervariable region of the mitochondrial 12S rRNA gene to characterize vertebrate com- Bay using eDNA metabarcoding. PLoS ONE 12(4): munities at 10 oceanographic stations spanning 45 km within the Monterey Bay National e0176343. https://doi.org/10.1371/journal. Marine Sanctuary (MBNMS). In this study, we collected three biological replicates of small pone.0176343 volume water samples (1 L) at 2 depths at each of the 10 stations. -
Freshwater Aquatic Biomes GREENWOOD GUIDES to BIOMES of the WORLD
Freshwater Aquatic Biomes GREENWOOD GUIDES TO BIOMES OF THE WORLD Introduction to Biomes Susan L. Woodward Tropical Forest Biomes Barbara A. Holzman Temperate Forest Biomes Bernd H. Kuennecke Grassland Biomes Susan L. Woodward Desert Biomes Joyce A. Quinn Arctic and Alpine Biomes Joyce A. Quinn Freshwater Aquatic Biomes Richard A. Roth Marine Biomes Susan L. Woodward Freshwater Aquatic BIOMES Richard A. Roth Greenwood Guides to Biomes of the World Susan L. Woodward, General Editor GREENWOOD PRESS Westport, Connecticut • London Library of Congress Cataloging-in-Publication Data Roth, Richard A., 1950– Freshwater aquatic biomes / Richard A. Roth. p. cm.—(Greenwood guides to biomes of the world) Includes bibliographical references and index. ISBN 978-0-313-33840-3 (set : alk. paper)—ISBN 978-0-313-34000-0 (vol. : alk. paper) 1. Freshwater ecology. I. Title. QH541.5.F7R68 2009 577.6—dc22 2008027511 British Library Cataloguing in Publication Data is available. Copyright C 2009 by Richard A. Roth All rights reserved. No portion of this book may be reproduced, by any process or technique, without the express written consent of the publisher. Library of Congress Catalog Card Number: 2008027511 ISBN: 978-0-313-34000-0 (vol.) 978-0-313-33840-3 (set) First published in 2009 Greenwood Press, 88 Post Road West, Westport, CT 06881 An imprint of Greenwood Publishing Group, Inc. www.greenwood.com Printed in the United States of America The paper used in this book complies with the Permanent Paper Standard issued by the National Information Standards Organization (Z39.48–1984). 10987654321 Contents Preface vii How to Use This Book ix The Use of Scientific Names xi Chapter 1.