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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
Hepatopancreatic Endosymbionts in Coastal Isopods (Crustacea: Isopoda)
Marine Biology 2001) 138: 955±963 Ó Springer-Verlag 2001 M. Zimmer á J. P. Danko á S. C. Pennings A. R. Danford á A. Ziegler á R. F. Uglow á T. H. Carefoot Hepatopancreatic endosymbionts in coastal isopods Crustacea: Isopoda), and their contribution to digestion Received: 28 August 2000 / Accepted: 8 December 2000 Abstract Three isopod species Crustacea: Isopoda), phenolic compounds was most developed in one of the commonly found in the intertidal and supratidal zones more marine species, suggesting that this trait may have of the North American Paci®c coast, were studied with evolved independently in isopod species that consume a respect to symbiotic microbiota in their midgut glands phenolic-rich diet, whether in marine habitats or on hepatopancreas). Ligia pallasii Oniscidea: Ligiidae) land. contained high numbers of microbialsymbionts in its hepatopancreatic caeca. Numbers of endosymbionts were strongly reduced by ingestion of antibiotics. By contrast, Introduction the hepatopancreas of Idotea wosnesenskii Valvifera: Idoteidae) and Gnorimosphaeroma oregonense Sphae- Endosymbionts are well known to play a key role in the romatidea: Sphaeromatidae) did not contain any mic- digestive processes of many terrestrialspecies summa- robiota. Results of feeding experiments suggest that rized in Martin 1983; Slaytor 1992; Breznak and Brune microbialendosymbionts contribute to digestive pro- 1994); however, their role in marine invertebrate species cesses in L. pallasii, the most terrestrialof the three is poorly understood. While studies have shown that gut isopods that we studied. The acquisition of digestion- microbiota exist in some marine invertebrates, know- enhancing endosymbionts may have been an important ledge of their nutritional role is scanty cf. -
Biology and Ecological Energetics of the Supralittoral Isopod Ligia Dilatata
BIOLOGY AND ECOLOGICAL ENERGETICS OF THE SUPRALITTORAL ISOPOD LIGIA DILATATA Town Cape byof KLAUS KOOP University Submitted for the degree of Master of Science in the Department of Zoology at the University of Cape Town. 1979 \ The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University (i) TABLE OF CONTENTS Page No. CHAPTER 1 INTRODUCTION 1 CHAPTER 2 .METHODS 4 2.1 The Study Area 4 2.2 Temperature Town 6 2.3 Kelo Innut 7 - -· 2.4 Population Dynamics 7 Field Methods 7 Laboratory Methods Cape 8 Data Processing of 11 2.5 Experimental 13 Calorific Values 13 Lerigth-Mass Relationships 14 Food Preference, Feeding and Faeces Production 14 RespirationUniversity 16 CHAPTER 3 RESULTS AND .DISCUSSION 18 3.1 Biology of Ligia dilatata 18 Habitat and Temperature Regime 18 Kelp Input 20 Feeding and Food Preference 20 Reproduction 27 Sex Ratio 30 Fecundity 32 (ii) Page No. 3.2 Population Structure and Dynamics 35 Population Dynamics and Reproductive Cycle 35 Density 43 Growth and Ageing 43 Survivorship and Mortality 52 3.3 Ecological Energetics 55 Calorific Values 55 Length-Mass Relationships 57 Production 61 Standing Crop 64 Consumption 66 Egestion 68 Assimilation 70 Respiration 72 3.4 The Energy Budget 78 Population Consumption, Egestion and Assimilation 78 Population Respiration 79 Terms of the Energy Budget 80 CHAPTER 4 CONCLUSIONS 90 CHAPTER 5 ACKNOWLEDGEMENTS 94 REFERENCES 95 1 CHAPTER 1 INTRODUCTION Modern developments in ecology have emphasised the importance of energy and energy flow in biological systems. -
Investigation of Symbionts of Isopods
Bacterial communities in the hepatopancreas of different isopod species Renate Eberl University of California, Davis ABSTRACT: This study aims to describe animal bacterial associations with culture independent methods. Bacterial communities in the hepatopancreas of the following 7 species of isopods (Pericaridea, Crustacea, Arthropoda) from 3 habitat types were investigated: 2 subtidal species Idotea baltica (IB) and I. wosnesenskii (IG); 2 intertidal species Ligia occidentalis (LO) and L. pallasii (LP), and 3 terrestrial species Armadillidium vulgare (A), Oniscus asellus (O) and Porcelio scaber (P) Oniscus asellus (O) and Porcelio scaber (P). CARD FISH and 16S clone libraries form environmental samples isolated from the hepatopancreas of isopods were used to describe the bacterial communities. Previous work has described two species of symbionts of terrestrial isopods and found very low diversity (predominately only one species per host). Clone libraries from some but not all species in this study included sequences closely related to previously described isopod symbionts with the majority clustering around Candidatus Hepatoplasma crinochetorum (Firmicutes, Mollicutes). These sequences clustered by host species confirming published results of host specificity. Closely related sequences to the other described symbiont 'Candidatus Hepatincola porcellionum' (α-Proteobacteria, Rickettsiales) were only obtained from the hepatopancreas of L. pallasii. Counts of bacterial abundance obtained with CARD FISH (Probe EUB I-III) ranged between 1.9 x 103 – 1.7 x 104 bacteria per hepatopancreas, this numbers are 2 to 3 orders of magnitude lower than previously published counts of DAPI stained cells. 1 INTRODUCTION: Bacterial associations with animal hosts are important on host functioning. Eukaryotes in a number of phyla have overcome their limitations in nutritional capabilities by associating with microorganisms. -
The Terrestrial Isopod Microbiome: an All-In-One Toolbox for Animal–Microbe Interactions of Ecological Relevance
The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal–Microbe Interactions of Ecological Relevance The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Bouchon, Didier, Martin Zimmer, and Jessica Dittmer. 2016. “The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal–Microbe Interactions of Ecological Relevance.” Frontiers in Microbiology 7 (1): 1472. doi:10.3389/fmicb.2016.01472. http:// dx.doi.org/10.3389/fmicb.2016.01472. Published Version doi:10.3389/fmicb.2016.01472 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:29408382 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA fmicb-07-01472 September 21, 2016 Time: 14:13 # 1 REVIEW published: 23 September 2016 doi: 10.3389/fmicb.2016.01472 The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal–Microbe Interactions of Ecological Relevance Didier Bouchon1*, Martin Zimmer2 and Jessica Dittmer3 1 UMR CNRS 7267, Ecologie et Biologie des Interactions, Université de Poitiers, Poitiers, France, 2 Leibniz Center for Tropical Marine Ecology, Bremen, Germany, 3 Rowland Institute at Harvard, Harvard University, Cambridge, MA, USA Bacterial symbionts represent essential drivers of arthropod ecology and evolution, influencing host traits such as nutrition, reproduction, immunity, and speciation. However, the majority of work on arthropod microbiota has been conducted in insects and more studies in non-model species across different ecological niches will be needed to complete our understanding of host–microbiota interactions. -
Molecular Taxonomy of Endemic Coastal Ligia Isopods from the Hawaiian Islands: Re-Description of L
Molecular taxonomy of endemic coastal Ligia isopods from the Hawaiian Islands: re-description of L. hawaiensis and description of seven novel cryptic species Carlos A. Santamaria Biology Faculty, College of Science and Mathematics, University of South Florida, Sarasota, FL, United States of America Department of Biological Sciences, Sam Houston State University, Huntsville, TX, United States of America ABSTRACT Past phylogeographic work has shown Ligia hawaiensis, a coastal isopod species endemic to the Hawaiian Islands, to be a paraphyletic complex of several highly genetically divergent yet morphologically cryptic lineages. Despite the need for a taxonomic revision of this species, the lack of morphological differentiation has proven an impediment to formally describe new Ligia species in the region. Molecular characters and species delimitation approaches have been successfully used to formally describe cryptic species in other crustacean taxa, suggesting they may aid taxonomic revisions of L. hawaiensis. Herein, various distance- and tree-based molecular species delimitation approaches are applied on a concatenated dataset comprised of both mitochondrial and nuclear gene sequences of L. hawaiensis and L. perkinsi, a terrestrial species endemic to the Hawaiian archipelago. Results of these analyses informed a taxonomic revision leading to the redescription of L. hawaiensis and the description of seven new cryptic species on the basis of molecular characters: L. dante, L. eleluensis, L. honu, L. kamehameha, L. mauinuiensis, L. pele, and L. rolliensis. These coastal Ligia species from the Hawaiian archipelago appear to be largely limited to single islands, where they appear largely constrained to volcanic rift zones suggesting allopatric events Submitted 7 December 2018 Accepted 22 July 2019 at local scales may drive diversification for poorly dispersing organisms in the Hawaiian Published 15 August 2019 coastlines. -
Ligia Pallasii Class: Multicrustacea, Malacostraca, Eumalacostraca
Phylum: Arthropoda, Crustacea Ligia pallasii Class: Multicrustacea, Malacostraca, Eumalacostraca Order: Peracarida, Isopoda, Oniscidea A rock louse or shore isopod Family: Ligiidae Taxonomy: The genus Ligia was very brief- 2007). The suborder to which L. pallasii be- ly called Ligyda in the early 1900s. Since longs, Oniscidea, is the largest isopod subor- then, the genus has been split into four gen- der and the only fully-terrestrial crustacean era (Geoligia, Megaligia, Nesoligia and group (Brusca et al. 2007). Ligia) based on morphological characters Cephalon: More than twice as wide as long (e.g. antennulae, mouthparts, telson) with rounded anterior margin and without (Jackson 1927). However, Van Name re- lobes (Fig. 1) (family Ligiidae, Brusca et al. duced these genera to subgeneric status 2007). and reinstated the genus Ligia in 1936 Eyes: Large, round, composite, and (Brusca 1980). Currently, these subgeneric close to lateral margin (Fig. 1) (Welton and names are rarely used and, instead, re- Miller 1980). Separated in front by twice the searchers refer to Ligia pallasii (e.g. Brusca length of the eye. et al. 2007). Antenna 1: First antennae are vestigial (Oniscidea, Brusca et al. 2007). Description Antenna 2: Second antennae reach to Size: To 35 mm in length (including uro- middle of fourth thoracic segment (Fig. 1). pods, which are 3 mm long) and approxi- The second antennae are with peduncles of mately 11 mm wide (Brusca and Brusca five articles: the first two are short, the third is 1978). The figured specimen (from Coos twice as long as the second, the fourth is 1½ Bay) is 22 mm long. -
Distribución Gratuita. Prohibida Su Venta Distribución Gratuita
DISTRIBUCIÓN GRATUITA. PROHIBIDA SU VENTA DISTRIBUCIÓN GRATUITA. PROHIBIDA SU VENTA DISTRIBUCIÓN GRATUITA. PROHIBIDA SU VENTA Primera edición, 2017 OBRA COMPLETA: ibsn 978-607-8328-92-5 VOLUMEN II: ibsn 978-607-8328-94-9 Coordinación y seguimiento general: Corrección de estilo: Andrea Cruz Angón1 Juana Moreno Armendáriz Antonio Ordorica Hermosillo2 Jessica Valero Padilla Diseño y formación: Erika Daniela Melgarejo1 Claudia Verónica Gómez Hernández Cuidado de la edición: Claudia Verónica Gómez Hernández Jessica Valero Padilla Erika Daniela Melgarejo1 Karla Carolina Nájera Cordero1 Jorge Cruz Medina1 Cartografía: Enrique Plascencia Hernández2 D.R. © 2017 Comisión Nacional para el Conocimiento y Uso de la Biodiversidad Liga Periférico – Insurgentes Sur 4903 Parques del Pedregal, Tlalpan, C.P. 14010 México,Ciudad de México. <http://www.conabio. gob.mx> D.R. © 2017 Secretaría de Medio Ambiente y Desarrollo Territorial Av. Circunvalación Agustín Yañez 2343, colonia Moderna, C.P. 44130, Guadalajara, Jalisco. <http://semadet.jalisco.gob.mx/> 1conabio, Comisión Nacional para el Conocimiento y Uso de la Biodiverdad,2 semadet, Secretaría de Medio Ambiente y Desarrollo Territorial Salvo en aquellas contribuciones que reflejan el trabajo y quehacer de las instituciones y organizaciones parti- cipantes, el contenido de las contribuciones es de exclusiva responsabilidad de los autores. Impreso en México/Printed in Mexico DISTRIBUCIÓN GRATUITA. PROHIBIDA SU VENTA DISTRIBUCIÓN GRATUITA. PROHIBIDA SU VENTA DISTRIBUCIÓN GRATUITA. PROHIBIDA SU VENTA Mensaje Una de cada tres especies de mamíferos y una de cada dos especies de aves de la fauna total de México se encuentran en Jalisco. Lo cual, siendo nuestro país el cuarto a escala mundial en biodiversidad, representa un gran compromiso en el ámbito medioambiental. -
Microscopy of Crustacean Cuticle: Formation of a Flexible Extracellular Matrix in Moulting Sea Slaters Ligia Pallasii
Journal of the Marine Microscopy of crustacean cuticle: formation of Biological Association of the United Kingdom a flexible extracellular matrix in moulting sea slaters Ligia pallasii cambridge.org/mbi J. Štrus1,M.Tušek-Žnidarič2, U. Repnik3, A. Blejec2 and A. Summers4 1Department of Biology, University of Ljubljana, SI-1000 Ljubljana, Slovenia; 2National Institute of Biology, SI-1000 Original Article Ljubljana, Slovenia; 3Department of Biosciences, University of Oslo, NO-0316 Oslo, Norway and 4University of Washington, Friday Harbor Laboratories, Washington State, USA Cite this article: ŠtrusJ,Tušek-Žnidarič M, Repnik U, Blejec A, Summers A (2019). Abstract Microscopy of crustacean cuticle: formation of a flexible extracellular matrix in moulting sea Structural and functional properties of exoskeleton in moulting sea slaters Ligia pallasii from slaters Ligia pallasii. Journal of the Marine the Eastern Pacific coast were investigated with CT scanning and electron microscopy. Biological Association of the United Kingdom Ultrastructure of preecdysial and postecdysial cuticular layers was described in premoult, 99,857–865. https://doi.org/10.1017/ S0025315418001017 intramoult and postmoult animals. Cuticle is a flexible extracellular matrix connected to the epidermal cells through pore channels. During premoult epicuticle and exocuticle are Received: 26 April 2018 formed and during intramoult and postmoult endocuticular lamellae are deposited and the Revised: 5 September 2018 cuticle is progressively constructed by thickening and mineralization. Cuticle permeability, Accepted: 26 October 2018 flexibility and waterproofing capacity change accordingly. Elaboration of epicuticular scales con- First published online: 4 December 2018 nected to an extensive network of nanotubules, establish its anti-adhesive and hydrophobic Key words: properties. Labelling with gold conjugated WGA lectins on Tokuyashu thawed cryosections Cuticle ultrastructure; micro CT scanning; exposes differences in chitin content between exocuticle and endocuticle. -
Responses of Two Semiterrestrial Isopods, Ligia Exotica and Ligia
Comp. Biochem. Physiol. Vol. 118A, No. 1, pp. 141±146, 1997 ISSN 0300-9629/97/$17.00 Copyright 1997 Elsevier Science Inc. PII S0300-9629(96)00451-3 Responses of Two Semiterrestrial Isopods, Ligia exotica and Ligia taiwanensis (Crustacea) to Osmotic Stress Min-Li Tsai,1, Chang-Feng Dai,2 and Hon-Cheng Chen1 1Department of Zoology, National Taiwan University, Taipei, Taiwan, ROC; and 2Institute of Oceanography, National Taiwan University, Taipei, Taiwan, ROC ABSTRACT. When immersed in fresh water, Ligia taiwanensis is a poorer osmoregulator than Ligia exotica,as judged by a lower LD50 at 96 hr and by the osmolalities of haemolymph. Animals appear to osmoregulate more ef®ciently in air. On immersion, both species displayed hyper- and hypo-osmoregulatory ability. Both species subjected less osmotic selection pressure during their inland colonization. The results suggest that a route of terrestrial colonization not involving transitional freshwater stresses had been taken by L. exotica and L. taiwa- nensis. comp biochem physiol 118A;1:141±146, 1997. 1997 Elsevier Science Inc. KEY WORDS. Ligia, osmotic stress, terrestrial colonization INTRODUCTION habitat adaptation. The physiological characteristics of osmoregulation can be used to test some predictions in the Most extant superfamilies of the order Isopoda are marine, physiological evolution (18,24). Water relations, osmoregu- and all terrestrial forms are included in one superfamily, the lation patterns, and environmental tolerances in isopods Oniscidea. Some members of family Ligiidae represent a have been investigated extensively (1,2,4,13,14,16,19,23, lesser degree of terrestriality. These species inhabit high- 26,28,31), but it is rare to compare the responses to various littoral or supralittoral zones where humidity is high, al- osmotic stresses in different acclimation conditions. -
A Phylogenetic Analysis of the Isopoda with Some Classificatory Recommendations
A PHYLOGENETIC ANALYSIS OF THE ISOPODA WITH SOME CLASSIFICATORY RECOMMENDATIONS RICHARD C. BRUSCA AND GEORGE D.F. WILSON Brusca, R.C. and Wilson, G.D.F. 1991 09 01: A phylogenetic analysis of the Isopoda with some classificatory recommendations. Memoirs of the Queensland Museum 31: 143-204. Brisbane. ISSN 0079-8835. The phylogenetic relationships of the isopod crustacean suborders are assessed using cladistic methodology. The monophyly of the Flabellifera was tested by including all 15 component families separately in the analysis. Four other peracarid orders (Mysidacea, Amphipoda, Mictacea, and Tanaidacea) were used as multiple out-groups to root our phylogenetic estimates within the Isopoda. A broad range of possible characters for use in assessing isopod relationships is discussed and a final data (character) matrix was selected. This data matrix, comprising 29 taxa and 92 characters, was subjected to computer-assisted analysis using four different phylogenetic programs: HENNIG86, PAUP, PHYLIP, and MacClade. Phylogenetic hypotheses from the literature (particularly Wagele, 1989a) are discussed and compared with our own conclusions. The following hypotheses are suggested by our analysis. The Isopoda constitutes a monophyletic group. The Phreatoicidea is the earliest derived group of living isopods, followed by an Asellota-Microcerberidea line, and next the Oniscidea. Above the Onis- cidea is a large clade of 'long-tailed' isopod taxa (Valvifera, Anthuridea, Flabellifera, Epicaridea, Gnathiidea). The Microcerberidea is the sister group of the Asellota, but probably should not be included in the Asellota. The Oniscidea constitutes a monophyletic group. The monotypic taxon Calabozoidea is either a primitive oniscidean, or is a sister group of the Oniscidea (Calabozoa is not an asellotan).