First Record of the Large Caerulean Damselfish
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Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
(Actinopterygii: Pomacentridae) from Micronesia, with Comments on Its Phylogenetic Relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1
Liu et al. Zoological Studies 2013, 52:6 http://www.zoologicalstudies.com/content/52/1/6 RESEARCH Open Access A new species of Pomacentrus (Actinopterygii: Pomacentridae) from Micronesia, with comments on its phylogenetic relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1 Abstract Background: Many widely distributed coral reef fishes exhibit cryptic lineages across their distribution. Previous study revealed a cryptic lineage of Pomacentrus coelestis mainly distributed in the area of Micronesia. Herein, we attempted to use molecular and morphological approaches to descript a new species of Pomacentrus. Results: The morphological comparisons have been conducted between cryptic species and P. coelestis. Pomacentrus micronesicus sp. nov. is characterized by 13 to 16 (typically 15) anal fin rays (vs. 13 to 15, typically 14 rays in P. coelestis) and 15 or 16 rakers on the lower limb of the first gill arch (vs. 13 or 14 rakers in P. coelestis). Divergence in cytochrome oxidase subunit I sequences of 4.3% is also indicative of species-level separation of P. micronesicus and P. coelestis. Conclusions: P. micronesicus sp.nov.isdescribedfromtheMarshallIslands, Micronesia on the basis of 21 specimens. Both morphological and genetic evidences support its distinction as a separate species from P. coelestis. Keywords: Cryptic species; Pomacentrus micronesicus; Speciation Background Japan and is widely distributed in the Indo-Pacific region Marine organisms that are morphologically undistinguish- (Allen 1991). Liu et al. (2012) conducted a phylogeographic able but genetically distinct are known as ‘cryptic species’ study of P. coelestis across its distribution using both (Knowlton 2000). In the past decade, DNA sequencing the mtDNA control region and microsatellite loci as has provided an independent means of testing the validity genetic markers and revealed two deeply divergent clades; of existing taxonomic units, revealing cases of inappropriate the first clade was shown to encompass the ‘true’ P. -
Aqua, International Journal of Ichthyology AQUA19(1):AQUA 24/01/13 12:37 Pagina 1
AQUA19(1):AQUA 24/01/13 12:37 Pagina 101 aqua International Journal of Ichthyology Vol. 19 (1), 21 January 2013 Aquapress ISSN 0945-9871 AQUA19(1):AQUA 24/01/13 12:37 Pagina 102 aqua - International Journal of Ichthyology Managing Editor: Scope aqua is an international journal which publishes original Heiko Bleher scientific articles in the fields of systematics, taxonomy, Via G. Falcone 11, bio geography, ethology, ecology, and general biology of 27010 Miradolo Terme (PV), Italy fishes. Papers on freshwater, brackish, and marine fishes Tel. & Fax: +39-0382-754129 will be considered. aqua is fully refereed and aims at pub- E-mail: [email protected] lishing manuscripts within 2-4 months of acceptance. In www.aqua-aquapress.com view of the importance of color patterns in species identi - fication and animal ethology, authors are encouraged to submit color illustrations in addition to descriptions of Scientific Editor: coloration. It is our aim to provide the international sci- entific community with an efficiently published journal Frank Pezold meeting high scientific and technical standards. College of Science & Engineering Texas A&M University – Corpus Christi Call for papers 6300 Ocean Drive – Corpus Christi, TX 78412-5806 The editors welcome the submission of original manu- Tel. 361-825-2349 scripts which should be sent in digital format to the scien- E-mail: [email protected] tific editor. Full length research papers and short notes will be considered for publication. There are no page charges and color illustrations will be published free of charge. Authors will receive one free copy of the issue in which Editorial Board: their paper is published and an e-print in PDF format. -
The Role of Threespot Damselfish (Stegastes Planifrons)
THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Masters of Science Brooke A. Axline-Minotti August 2003 This thesis entitled THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF BY BROOKE A. AXLINE-MINOTTI has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Molly R. Morris Associate Professor of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences Axline-Minotti, Brooke A. M.S. August 2003. Environmental Studies The Role of Threespot Damselfish (Stegastes planifrons) as a Keystone Species in a Bahamian Patch Reef. (76 pp.) Director of Thesis: Molly R. Morris Abstract The purpose of this research is to identify the role of the threespot damselfish (Stegastes planifrons) as a keystone species. Measurements from four functional groups (algae, coral, fish, and a combined group of slow and sessile organisms) were made in various territories ranging from zero to three damselfish. Within territories containing damselfish, attack rates from the damselfish were also counted. Measures of both aggressive behavior and density of threespot damselfish were correlated with components of biodiversity in three of the four functional groups, suggesting that damselfish play an important role as a keystone species in this community. While damselfish density and measures of aggression were correlated, in some cases only density was correlated with a functional group, suggesting that damselfish influence their community through mechanisms other than behavior. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Dynamic Distributions of Coastal Zooplanktivorous Fishes
Dynamic distributions of coastal zooplanktivorous fishes Matthew Michael Holland A thesis submitted in fulfilment of the requirements for a degree of Doctor of Philosophy School of Biological, Earth and Environmental Sciences Faculty of Science University of New South Wales, Australia November 2020 4/20/2021 GRIS Welcome to the Research Alumni Portal, Matthew Holland! You will be able to download the finalised version of all thesis submissions that were processed in GRIS here. Please ensure to include the completed declaration (from the Declarations tab), your completed Inclusion of Publications Statement (from the Inclusion of Publications Statement tab) in the final version of your thesis that you submit to the Library. Information on how to submit the final copies of your thesis to the Library is available in the completion email sent to you by the GRS. Thesis submission for the degree of Doctor of Philosophy Thesis Title and Abstract Declarations Inclusion of Publications Statement Corrected Thesis and Responses Thesis Title Dynamic distributions of coastal zooplanktivorous fishes Thesis Abstract Zooplanktivorous fishes are an essential trophic link transferring planktonic production to coastal ecosystems. Reef-associated or pelagic, their fast growth and high abundance are also crucial to supporting fisheries. I examined environmental drivers of their distribution across three levels of scale. Analysis of a decade of citizen science data off eastern Australia revealed that the proportion of community biomass for zooplanktivorous fishes peaked around the transition from sub-tropical to temperate latitudes, while the proportion of herbivores declined. This transition was attributed to high sub-tropical benthic productivity and low temperate planktonic productivity in winter. -
Fishes of the Philippine Islands
FISHES OF THE PIDLIPPINE ISLANDS. By BARTON WARREN EVERMANN. A. M••Ph.D••and ALVIN SEALE. A. B. BUREAU OF FISHERIES DOCUMENT NO. 607. B. B. F. i906-4 49 Blank page retained for pagination FISHES OF THE PHILIPPINE ISLANDS. By BARTON WARREN EVERMANN, A. M., PH. D., AND ALVIN SEAJ~E, A. B. Among the exhibits made by the U. S. Bureau of Insular Affairs at the Lou isiana Purchase Exposition, held at St. Louis, Missouri, during the summer and fall of 1904, was a considerable collection of fishes from the Philippine Islands. This collection had been made under the direction of the Philippine government for the specific purpose mentioned. At the close of the exposition the authorities turned the entire collection over.to the U. S. Bureau of Fisheries for study and report. The localities represented in the collection are as follows: San Fabian, Pangasinan, Luzon.~San Fabian is situated on the Gulf of Lin gayen, about 100 miles north of Manila. The collection from this place was made by Mr. C. L. Hall and is a-large and important one. Bacon, Sorsoqon, Luzon.-Sorsogon is the most southern province of Luzon. Bacon is situated in the northern part of the province, on Albay Inlet, in approxi- mately latitude 130 3' north and longitude 1240 east. Bulan, Sorsogon, Luzon.-Bulan is on the west coast of Sorsogon, near the southern end of the province, approximately in latitude 120 38' north, longitude 1230 22' east. The collections from Bacon and Bulan are more extensive than any of the others. -
Coral Reef Fishes Exhibit Strong Responses to a Habitat Boundary
The following supplement accompanies the article Life on the edge: Coral reef fishes exhibit strong responses to a habitat boundary Katie Sambrook*, Geoffrey P. Jones, Mary C. Bonin *Corresponding author: [email protected] Marine Ecology Progress Series 561: 203–215 (2016) Table S1. Feeding guilds for the 51 fish species from 13 families included in surveys. Species were assigned to one of five feeding guilds based on published information about diet. Carnivores were defined as species that primarily consume macro invertebrates (e.g. crustaceans, echinoderms, gastropods) and/or fish. Omnivores were classified as species that consume both plant and animal material, and the category herbivore included species that primarily eat organic plant matter and/or detritus. Planktivores include species documented feeding primarily on plankton in the water column Family Species Feeding guild Reference Acanthuridae Choat et al. 2002, Wilson et al. 2008, Ctenochaetus striatus Herbivore Green & Bellwood 2009 Zebrasoma scopas Herbivore Choat et al. 2002 Balistidae Balistapus undulatus Omnivore Wilson et al. 2008, Pratchett et al. 2011 Chaetodontidae Berumen et al. 2005, Pratchett 2007, Chaetodon baronessa Corallivore Wilson et al. 2008 Chaetodon kleinii Omnivore Pratchett 2005, Pratchett et al. 2008 Chaetodon lunulatus Corallivore Pratchett 2005, Wilson et al. 2008 Chaetodon vagabundus Omnivore Anderson et al. 1981, Wilson et al. 2008 Wilson et al. 2008, Nagelkerken et al. Heniochus varius Carnivore 2009 Cirrhitidae Paracirrhites forsteri Carnivore Leray et al. 2012 Labridae Elliott & Bellwood 2003, Wilson et al. Halichoeres hortulanus Carnivore 2008, Berkström et al. 2012 Halichoeres melanurus Carnivore Pratchett et al. 2011, Berkström et al. 2012 Labroides spp. -
Behaviour of the Recently-Described Rodrigues Damselfish, Pomacentrus Rodriguesensis
Western Indian Ocean J. Mar. Sci. Vol. 10, No. 2, pp. 185-189, 2011 © 2012 WIOMSA Behaviour of the Recently-described Rodrigues Damselfish, Pomacentrus rodriguesensis E.R. Hardman, R. Jhangeer-Khan, J.S.J. Raffin, M.S. Meunier, S. Perrine and R. Raffaut Shoals Rodrigues, Marine Research, Training & Education Centre, Pointe Monier, Rodrigues, Mauritius. Keywords: Pomacentrus rodriguesensis, damselfish, Rodrigues, behaviour, territoriality. Abstract—This comprises the first study on the behaviour of a recently described species, Pomacentrus rodriguesensis, on the island of Rodrigues. P. rodriguesensis was observed to be solitary with a territorial preference for live coral. Individuals fed on a combination of food types, eating predominantly plankton, but also occasionally benthic algae. P. rodriguesensis was found to defend its territory against other individuals. Conspecifics elicited the majority of agonistic responses but P. rodriguesensis also acted aggressively towards benthic feeders such as Pomacentrus pikei and Stegastes limbatus and species of wrasse during summer. It is suggested that the pattern of territoriality observed in P. rodriguesensis prevents a reduction in the benthic algal component of its diet by competitors and protects its nests from egg predators. Its preferred habitat of live coral suggests that it may be vulnerable to declines in coral cover. INTRODUCTION A total of 493 coastal fish species have been Pomacentrids are an ecologically diverse recorded in the large, shallow lagoon of family of fish and many species -
Pomacentrus Bellipictus, a New Microendemic Species of Damselfish (Pisces: Pomacentridae) from the Fakfak Peninsula, West Papua, Indonesia
Pomacentrus bellipictus, a new microendemic species of damselfish (Pisces: Pomacentridae) from the Fakfak Peninsula, West Papua, Indonesia GERALD R. ALLEN Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986, Australia E-mail: [email protected] MARK V. ERDMANN Conservation International Indonesia Marine Program, Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235, Indonesia California Academy of Sciences, Golden Gate Park, San Francisco, CA 94118, USA Email: [email protected] NUR I. HIDAYAT Conservation International Indonesia Marine Program, Jl. Imam Bonjol – Wagom Utara, Fakfak 98611, Indonesia E-mail: [email protected] Abstract A new species of damselfish, Pomacentrus bellipictus, is described from 13 specimens, 37.7–67.9 mm SL, collected at the Kokas area of the Fakfak Peninsula, a portion of the Bird’s Head Peninsula of western New Guinea (West Papua Province, Indonesia). It is distinguished from most similar species in the western Pacific Ocean by having 14 instead of 13 dorsal-fin spines. It also possesses a unique facial coloration consisting of highly contrasted blue areas around the mouth and onto the isthmus, below the eye, and along the margin of the preopercle. The only other species of Pomacentrus from the region with 14 dorsal spines that are also drab-brown when alive, P. fakfakensis and P. opisthostigma, are clearly distinguished on the basis of adult and juvenile color patterns and also show different habitat preferences. In addition, P. opisthostigma is distinguished from the other two species by fewer lateral-line scales (usually 15–17 vs. usual 18–19) and more gill rakers on the first arch (26–29 vs. -
Pomacentrus Andamanensis, a New Species of Damselfish (Teleostei: Pomacentridae) from the Andaman Sea, Indian Ocean
Pomacentrus andamanensis, a new species of damselfish (Teleostei: Pomacentridae) from the Andaman Sea, Indian Ocean GERALD R. ALLEN Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986 https://orcid.org/0000-0002-4661-4898 E-mail: [email protected] MARK V. ERDMANN Conservation International Asia-Pacific Marine Program, University of Auckland, 23 Symonds St., Auckland 1020 New Zealand California Academy of Sciences, Golden Gate Park, San Francisco, CA 94118, USA https://orcid.org/0000-0002-3644-8347 E-mail: [email protected] ENEX YUNI NINGSIH Biodiversitas Indonesia (BIONESIA), Jl. Tukad Balian No. 121, Denpasar 80226, Bali, Indonesia E–mail: [email protected] Abstract A new damselfish species,Pomacentrus andamanensis n. sp., is described from 45 specimens, 19.8–64.3 mm SL, collected from Indian Ocean coral reefs, in the Andaman Sea off western Thailand. It also occurs in the Andaman Islands, Myanmar, and the northwestern tip of Sumatra, on the basis of collections (with tissue sampling), underwater photographs, and observations. It is a sibling species of Pomacentrus amboinensis from the Western Pacific Ocean, but differs from it and the Micronesian species of the complex,Pomacentrus bipunctatus, primarily in the adult color pattern, in particular a conspicuous ocellus on the rear dorsal fin in adults, which is only found on juveniles of the other species. Most meristic values are the same, but the range of total gill rakers differs, although with some overlap. An analysis of the mtDNA control-region sequences for the new species shows a deep divergence of 21% from 7 populations of PacificP.