Chrysiptera: Pomacentridae) from Coral Reefs of the Solomon Islands
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Literature Review
Literature Review: SEAGRASS AND MANGROVE HABITATS AS REEF FISH NURSERY HABITATS AND CUMULATIVE IMPACTS FROM COASTAL CONSTRUCTION IN FLORIDA, USA (CONTRACT ORDER #: GA133F06SE5828) FINAL Submitted to: Jocelyn Karazsia National Marine Fisheries Service 400 North Congress Ave, Suite 120 West Palm Beach, Florida 33401 561-616-8880 x207 [email protected] Submitted by: Stephanie Williams 22E Calle Muñoz Rivera PO BOX 360 Rincón, Puerto Rico 00677-0360 March 2007 INTRODUCTION: The 1996 amendments to the Magnuson-Stevens Fishery Conservation and Management Act set forth a new mandate for the National Marine Fisheries Service (NMFS), regional fishery management councils, and other Federal agencies to identify and protect important marine and anadromous fish habitat, such as mangroves, seagrasses, coral reefs, hard bottom reefs, and wetlands. The purpose of this project is to complete a literature review of references, including university theses and dissertations, scientific studies, reports, books, and gray literature, regarding the role of seagrasses and mangroves in coral reef ecology and reef fish productivity; and the impacts of coastal construction to reef fish nursery habitats, fish stocks, and the implications of these impacts for the fisheries of Florida, USA. Coastal construction includes beach nourishment, dredging, dock and marina construction, shoreline hardening, and the construction of other structures that result in the elimination or degradation of mangrove and seagrass habitats. This project supports local efforts to implement coastal construction best management practices and to provide information on cumulative impacts on coral reef fish nursery habitats in Florida, USA. References were compiled in the form of an annotated bibliography containing the complete citation of the work, a summarized abstract, the reference location, and keywords. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Stanford Alumni', Bronze Tablet Dedicated June, 1931, University of Hawaii: "India Rubber Tree Planted by David Starr Jordan
Stanford Alumni', bronze tablet dedicated June, 1931, University of Hawaii: "India rubber tree planted by David Starr Jordan. Chancellor Emeritus. Leland Stanford Jr. University, December I I, 1922." Dr. Jordan recently celebrated his eightieth birthday. tnItnlinlintinitnItnItla 11:111C11/111/ 1/Oltial • • • • - !• • 4. ••• 4, a . ilmci, fittb _vittrfiri firtaga3utr . • CONDUCTED BY ALEXANDER HUME FORD • Volume XLII Number 4 • CONTENTS FOR. OCTOBER, 1931 • . Art Section—Fisheries in the Pacific - - - - 302 • History of Zoological Explorations of the Pacific Coast - 317 • By Dr. David Starr Jordan • Science Over the Radio . An Introduction to Insects in Hawaii - - - - 321 By E. H. Bryan, Jr. Insect Pests of Sugar Cane in Hawaii - - - - 325 By O. H. Swezey Some Insect Pests of Pineapple Plants - - - 328 By Dr. Walter Carter Termites in Hawaii - - - - - - - 331 • By E. M. Ehrhorn . The Mediterranean Fruit Fly - - - - 333 41 By a C. McBride Combating Garden Insects in Hawaii - - - - 335 • By Merrill K. Riley i Some Aspects of Biological Control in Hawaii - - 339 . By D. T. Fullaway • • The Minerals of Oahu - - - - - - - 341 By Dr. Arthur S. Eakle . Tropical America's Agricultural Gifts - - - - 344 By 0. F. Cook t • Two Bird Importations Into the South Seas - - - 351 • By Inez Wheeler Westgate • Dairying in New Zealand - - - - - - 355 By Reivi Alley Oyer-Production eof Rice in Japan - - - - - 357 Tai-Kam Island Leper Colony of China - - - - 363 By A. C. Deckelman Journal of the•Pan-Pacific Research Institution, Vol. VI. No. 4 Bulletin of the Pan-Pacific Union, New Series, No. 140 CE Ile ItIth-liariftr flatuuninr Published monthly by ALEXANDER HUME FORD, 301 Pan-Pacific Building, Honolulu, T. -
Embryonic Development of Percula Clownfish, Amphiprion Percula (Lacepede, 1802)
Middle-East Journal of Scientific Research 4 (2): 84-89, 2009 ISSN 1990-9233 © IDOSI Publications, 2009 Embryonic Development of Percula Clownfish, Amphiprion percula (Lacepede, 1802) 11K.V. Dhaneesh, T.T. Ajith Kumar and 2T. Shunmugaraj 1Centre of Advanced Study in Marine Biology, Annamalai University Parangipettai-608 502, Tamilnadu, India 2Centre for Marine Living Resources and Ecology, Ministry of Earth Sciences, Cochin, Kerala, India Abstract: The Percula clownfish, Amphiprion percula (Lacepede, 1802) were reared in marine ornamental fish hatchery by using estuarine water to study their spawning behaviour, egg deposition and embryonic development. The spawning was recorded year round with the reproductive cycle between 14-21 days. The eggs were adhesive type, capsule shaped and bright orange in colour measuring 2.0-2.3 mm length and 1.0-1.2 mm width containing fat globules. The process of embryonic development was divided into 26 stages based on the morphological characteristics of the developing embryo. The time elapsed for each embryonic developmental stage was recorded. Hatching took place 151-152 hours after fertilization. Key words: Percula clownfish Captive condition Morphology Embryonic development INTRODUCTION transported to the hatchery at Centre of Advanced Study in Marine Biology, Annamalai University, Parangipettai, The anemonefish, Amphiprion percula is a tropical Tamil Nadu, India. For the better health and survival, the coral reef fish belonging to the family Pomacentridae fishes and anemones were packed in individual polythene and sub family Amphiprioninae and they are one of the bags filled with sufficient oxygen. After transportation, most popular attractions in the marine ornamental fish the fishes and anemones were accommodated in a trade. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
The Importance of Live Coral Habitat for Reef Fishes and Its Role in Key Ecological Processes
ResearchOnline@JCU This file is part of the following reference: Coker, Darren J. (2012) The importance of live coral habitat for reef fishes and its role in key ecological processes. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/23714/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/23714/ THE IMPORTANCE OF LIVE CORAL HABITAT FOR REEF FISHES AND ITS ROLE IN KEY ECOLOGICAL PROCESSES Thesis submitted by Darren J. Coker (B.Sc, GDipResMeth) May 2012 For the degree of Doctor of Philosophy In the ARC Centre of Excellence for Coral Reef Studies and AIMS@JCU James Cook University Townsville, Queensland, Australia Statement of access I, the undersigned, the author of this thesis, understand that James Cook University will make it available for use within the University Library and via the Australian Digital Thesis Network for use elsewhere. I understand that as an unpublished work this thesis has significant protection under the Copyright Act and I do not wish to put any further restrictions upon access to this thesis. Signature Date ii Statement of sources Declaration I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at my university or other institution of tertiary education. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. -
(Actinopterygii: Pomacentridae) from Micronesia, with Comments on Its Phylogenetic Relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1
Liu et al. Zoological Studies 2013, 52:6 http://www.zoologicalstudies.com/content/52/1/6 RESEARCH Open Access A new species of Pomacentrus (Actinopterygii: Pomacentridae) from Micronesia, with comments on its phylogenetic relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1 Abstract Background: Many widely distributed coral reef fishes exhibit cryptic lineages across their distribution. Previous study revealed a cryptic lineage of Pomacentrus coelestis mainly distributed in the area of Micronesia. Herein, we attempted to use molecular and morphological approaches to descript a new species of Pomacentrus. Results: The morphological comparisons have been conducted between cryptic species and P. coelestis. Pomacentrus micronesicus sp. nov. is characterized by 13 to 16 (typically 15) anal fin rays (vs. 13 to 15, typically 14 rays in P. coelestis) and 15 or 16 rakers on the lower limb of the first gill arch (vs. 13 or 14 rakers in P. coelestis). Divergence in cytochrome oxidase subunit I sequences of 4.3% is also indicative of species-level separation of P. micronesicus and P. coelestis. Conclusions: P. micronesicus sp.nov.isdescribedfromtheMarshallIslands, Micronesia on the basis of 21 specimens. Both morphological and genetic evidences support its distinction as a separate species from P. coelestis. Keywords: Cryptic species; Pomacentrus micronesicus; Speciation Background Japan and is widely distributed in the Indo-Pacific region Marine organisms that are morphologically undistinguish- (Allen 1991). Liu et al. (2012) conducted a phylogeographic able but genetically distinct are known as ‘cryptic species’ study of P. coelestis across its distribution using both (Knowlton 2000). In the past decade, DNA sequencing the mtDNA control region and microsatellite loci as has provided an independent means of testing the validity genetic markers and revealed two deeply divergent clades; of existing taxonomic units, revealing cases of inappropriate the first clade was shown to encompass the ‘true’ P. -
Abudefduf Taurus (Night Sergeant)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Abudefduf taurus (Night Sergeant) Family: Pomacentridae (Damselfish and Clownfish) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Night sergeant, Abudefduf taurus. [http://biogeodb.stri.si.edu/caribbean/en/gallery/family/1604, downloaded 18 February 2017] TRAITS. The night sergeant is also called the pilotfish or dovetail, and was formerly known as Glyphidodon taurus (IUCN, 2017). This fish can be identified by its tawny yellow coloured nape of the neck, with 5-6 dark irregular bars along the body from the nape to the peduncle (narrow part of the body that attaches the tail), and a black spot that is sometimes seen on the upper base of the pectoral fin (fin behind the operculum) (Fig. 1). It is heavy-bodied; compressed, oblong, fairly deep, robust and heavily scaled body; single row of teeth with flat or notched tips; bluntly forked caudal fin, a total of 13 dorsal spines and 11-12 soft dorsal rays in a single continuous dorsal fin, 2 anal spines and 10 anal soft rays. The night sergeant can have a maximum body length of 25cm, with a common length of 20cm, and is the largest species in the Pomacentridae family (Robins and Ray, 1986). UWI The Online Guide to the Animals of Trinidad and Tobago Ecology DISTRIBUTION. Night sergeants are widely distributed in the tropical and subtropical eastern and western Atlantic Ocean (Fig. 2). In the western Atlantic this includes southern Florida down the coast of the United States of America and the Caribbean Sea. -
Aqua, International Journal of Ichthyology AQUA19(1):AQUA 24/01/13 12:37 Pagina 1
AQUA19(1):AQUA 24/01/13 12:37 Pagina 101 aqua International Journal of Ichthyology Vol. 19 (1), 21 January 2013 Aquapress ISSN 0945-9871 AQUA19(1):AQUA 24/01/13 12:37 Pagina 102 aqua - International Journal of Ichthyology Managing Editor: Scope aqua is an international journal which publishes original Heiko Bleher scientific articles in the fields of systematics, taxonomy, Via G. Falcone 11, bio geography, ethology, ecology, and general biology of 27010 Miradolo Terme (PV), Italy fishes. Papers on freshwater, brackish, and marine fishes Tel. & Fax: +39-0382-754129 will be considered. aqua is fully refereed and aims at pub- E-mail: [email protected] lishing manuscripts within 2-4 months of acceptance. In www.aqua-aquapress.com view of the importance of color patterns in species identi - fication and animal ethology, authors are encouraged to submit color illustrations in addition to descriptions of Scientific Editor: coloration. It is our aim to provide the international sci- entific community with an efficiently published journal Frank Pezold meeting high scientific and technical standards. College of Science & Engineering Texas A&M University – Corpus Christi Call for papers 6300 Ocean Drive – Corpus Christi, TX 78412-5806 The editors welcome the submission of original manu- Tel. 361-825-2349 scripts which should be sent in digital format to the scien- E-mail: [email protected] tific editor. Full length research papers and short notes will be considered for publication. There are no page charges and color illustrations will be published free of charge. Authors will receive one free copy of the issue in which Editorial Board: their paper is published and an e-print in PDF format. -
The Role of Threespot Damselfish (Stegastes Planifrons)
THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Masters of Science Brooke A. Axline-Minotti August 2003 This thesis entitled THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF BY BROOKE A. AXLINE-MINOTTI has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Molly R. Morris Associate Professor of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences Axline-Minotti, Brooke A. M.S. August 2003. Environmental Studies The Role of Threespot Damselfish (Stegastes planifrons) as a Keystone Species in a Bahamian Patch Reef. (76 pp.) Director of Thesis: Molly R. Morris Abstract The purpose of this research is to identify the role of the threespot damselfish (Stegastes planifrons) as a keystone species. Measurements from four functional groups (algae, coral, fish, and a combined group of slow and sessile organisms) were made in various territories ranging from zero to three damselfish. Within territories containing damselfish, attack rates from the damselfish were also counted. Measures of both aggressive behavior and density of threespot damselfish were correlated with components of biodiversity in three of the four functional groups, suggesting that damselfish play an important role as a keystone species in this community. While damselfish density and measures of aggression were correlated, in some cases only density was correlated with a functional group, suggesting that damselfish influence their community through mechanisms other than behavior. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Orange Clownfish (Amphiprion Percula)
NOAA Technical Memorandum NMFS-PIFSC-52 April 2016 doi:10.7289/V5J10152 Status Review Report: Orange Clownfish (Amphiprion percula) Kimberly A. Maison and Krista S. Graham Pacific Islands Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration U.S. Department of Commerce About this document The mission of the National Oceanic and Atmospheric Administration (NOAA) is to understand and predict changes in the Earth’s environment and to conserve and manage coastal and oceanic marine resources and habitats to help meet our Nation’s economic, social, and environmental needs. As a branch of NOAA, the National Marine Fisheries Service (NMFS) conducts or sponsors research and monitoring programs to improve the scientific basis for conservation and management decisions. NMFS strives to make information about the purpose, methods, and results of its scientific studies widely available. NMFS’ Pacific Islands Fisheries Science Center (PIFSC) uses the NOAA Technical Memorandum NMFS series to achieve timely dissemination of scientific and technical information that is of high quality but inappropriate for publication in the formal peer- reviewed literature. The contents are of broad scope, including technical workshop proceedings, large data compilations, status reports and reviews, lengthy scientific or statistical monographs, and more. NOAA Technical Memoranda published by the PIFSC, although informal, are subjected to extensive review and editing and reflect sound professional work. Accordingly, they may be referenced in the formal scientific and technical literature. A NOAA Technical Memorandum NMFS issued by the PIFSC may be cited using the following format: Maison, K. A., and K. S. Graham. 2016. Status Review Report: Orange Clownfish (Amphiprion percula).