Long-Term Cleaning Patterns of the Sharknose Goby (Elacatinus Evelynae)
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
The Reef Corridor of the Southwest Gulf of Mexico: Challenges for Its Management and Conservation
Ocean & Coastal Management 86 (2013) 22e32 Contents lists available at ScienceDirect Ocean & Coastal Management journal homepage: www.elsevier.com/locate/ocecoaman The Reef Corridor of the Southwest Gulf of Mexico: Challenges for its management and conservation Leonardo Ortiz-Lozano a,*, Horacio Pérez-España b,c, Alejandro Granados-Barba a, Carlos González-Gándara d, Ana Gutiérrez-Velázquez e, Javier Martos d a Análisis y Síntesis de Zonas Costeras, Instituto de Ciencias Marinas y Pesquerías, Universidad Veracruzana, Av. Hidalgo #617, Col. Río Jamapa 94290, Boca del Río, Veracruz, Mexico b Arrecifes Coralinos, Instituto de Ciencias Marinas y Pesquerías, Universidad Veracruzana, Av. Hidalgo #617, Col. Río Jamapa 94290, Boca del Río, Veracruz, Mexico c Centro de Investigación de Ciencias Ambientales, Universidad Autónoma del Carmen, Av. Laguna de Términos s/n, Col. Renovación 2da sección, CP 24155, Ciudad del Carmen, Campeche, Mexico d Laboratorio de Arrecifes Coralinos, Facultad de Ciencias Biológicas y Agropecuarias, Zona Poza Rica Tuxpan, Universidad Veracruzana, Carr. Tuxpan.- Tampico km 7.5, Col. Universitaria, CP 92860, Tuxpan, Veracruz, Mexico e Posgrado. Instituto de Ecología, A.C., Departamento de Ecología y Comportamiento Animal, Apartado Postal 63, Xalapa 91000, Veracruz, Mexico article info abstract Article history: Flow of species and spatial continuity of biological processes between geographically separated areas Available online may be achieved using management tools known as Ecological Corridors (EC). In this paper we propose an EC composed of three highly threatened coral reef systems in the Southwest Gulf of Mexico: Sistema Arrecifal Lobos Tuxpan, Sistema Arrecifal Veracruzano and Arrecifes de los Tuxtlas. The proposed EC is supported by the concept of Marine Protected Areas Networks, which highlights the biogeographical and habitat heterogeneity representations as the main criteria to the establishment of this kind of networks. -
Literature Review
Literature Review: SEAGRASS AND MANGROVE HABITATS AS REEF FISH NURSERY HABITATS AND CUMULATIVE IMPACTS FROM COASTAL CONSTRUCTION IN FLORIDA, USA (CONTRACT ORDER #: GA133F06SE5828) FINAL Submitted to: Jocelyn Karazsia National Marine Fisheries Service 400 North Congress Ave, Suite 120 West Palm Beach, Florida 33401 561-616-8880 x207 [email protected] Submitted by: Stephanie Williams 22E Calle Muñoz Rivera PO BOX 360 Rincón, Puerto Rico 00677-0360 March 2007 INTRODUCTION: The 1996 amendments to the Magnuson-Stevens Fishery Conservation and Management Act set forth a new mandate for the National Marine Fisheries Service (NMFS), regional fishery management councils, and other Federal agencies to identify and protect important marine and anadromous fish habitat, such as mangroves, seagrasses, coral reefs, hard bottom reefs, and wetlands. The purpose of this project is to complete a literature review of references, including university theses and dissertations, scientific studies, reports, books, and gray literature, regarding the role of seagrasses and mangroves in coral reef ecology and reef fish productivity; and the impacts of coastal construction to reef fish nursery habitats, fish stocks, and the implications of these impacts for the fisheries of Florida, USA. Coastal construction includes beach nourishment, dredging, dock and marina construction, shoreline hardening, and the construction of other structures that result in the elimination or degradation of mangrove and seagrass habitats. This project supports local efforts to implement coastal construction best management practices and to provide information on cumulative impacts on coral reef fish nursery habitats in Florida, USA. References were compiled in the form of an annotated bibliography containing the complete citation of the work, a summarized abstract, the reference location, and keywords. -
Understanding Transformative Forces of Aquaculture in the Marine Aquarium Trade
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library Summer 8-22-2020 Senders, Receivers, and Spillover Dynamics: Understanding Transformative Forces of Aquaculture in the Marine Aquarium Trade Bryce Risley University of Maine, [email protected] Follow this and additional works at: https://digitalcommons.library.umaine.edu/etd Part of the Marine Biology Commons Recommended Citation Risley, Bryce, "Senders, Receivers, and Spillover Dynamics: Understanding Transformative Forces of Aquaculture in the Marine Aquarium Trade" (2020). Electronic Theses and Dissertations. 3314. https://digitalcommons.library.umaine.edu/etd/3314 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. SENDERS, RECEIVERS, AND SPILLOVER DYNAMICS: UNDERSTANDING TRANSFORMATIVE FORCES OF AQUACULTURE IN THE MARINE AQUARIUM TRADE By Bryce Risley B.S. University of New Mexico, 2014 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Marine Policy and Marine Biology) The Graduate School The University of Maine May 2020 Advisory Committee: Joshua Stoll, Assistant Professor of Marine Policy, Co-advisor Nishad Jayasundara, Assistant Professor of Marine Biology, Co-advisor Aaron Strong, Assistant Professor of Environmental Studies (Hamilton College) Christine Beitl, Associate Professor of Anthropology Douglas Rasher, Senior Research Scientist of Marine Ecology (Bigelow Laboratory) Heather Hamlin, Associate Professor of Marine Biology No photograph in this thesis may be used in another work without written permission from the photographer. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Bony Fish Guide
This guide will help you to complete the Bony Fish Observation Worksheet. Bony Fish Guide Fish (n.) An ectothermic (cold-blooded) vertebrate (with a backbone) aquatic (lives in water) animal that moves with the help of fins (limbs with no fingers or toes) and breathes with gills. This definition might seem very broad, and that is because fish are one of the most diverse groups of animals on the planet—there are a lot of fish in the sea (not to mention rivers, lakes and ponds). In fact, scientists count at least 32,000 species of fish—more than any other type of vertebrate. Fish are split into three broad classes: Jawless Fish Cartilaginous Fish Bony Fish (hagfish, lampreys, etc.) (sharks, rays, skates, etc.) (all other fish) This guide will focus on the Bony Fish. There are at least 28,000 species of bony fish, and they are found in almost every naturally occurring body of water on the planet. Bony fish range in size: • Largest: ocean sunfish (Mola mola), 11 feet, over 5,000 pounds • Smallest: dwarf pygmy goby (Pandaka pygmaea), ½ inch, a fraction of an ounce (This image is life size.) The following guide will help you learn more about the bony fish you can find throughout the New England Aquarium. Much of the guide is keyed to the Giant Ocean Tank, but can be applied to many kinds of fish. Even if you know nothing about fish, you can quickly learn a few things: The shape of a fish’s body, the position of its mouth and the shape of its tail can give you many clues as to its behavior and adaptations. -
Field Manual for Coral Reef Assessments
EPA/600/R-12/029 | April 2012 |www.epa.gov/ged Field Manual for Coral Reef Assessments Office of Research and Development National Health and Environmental Effects Research Laboratory Gulf Ecology Division Field Manual for Coral Reef Assessments Deborah L. Santavy William S. Fisher Jed G. Campbell Robert L. Quarles Gulf Ecology Division National Health and Environmental Effects Research Laboratory Office of Research and Development U.S. Environmental Protection Agency 1 Sabine Island Dr. Gulf Breeze, FL. 32561 Notice and Disclaimer The U.S. Environmental Protection Agency through its Office of Research and Development and Office of Water funded and collaborated in the research and development of these field protocols. It has been subjected to the Agency’s peer and administrative review and has been approved for publication as an EPA document. Mention of trade names or commercial products does not constitute endorsement or recommendation for use. This is a contribution to the EPA Office of Research and Development’s Safe and Sustainable Water Resources Program, Coral Reefs Project. The appropriate citation for this report is: Santavy DL, Fisher WS, Campbell JG and Quarles RL. 2012. Field Manual for Coral Reef Assessments. U.S. Environmental Protection Agency, Office of Research and Development, Gulf Ecology Division, Gulf Breeze, FL. EPA/600/R-12/029. April 2012. This document can be downloaded from EPA’s website at: http://www.epa.gov/ged/publications.html ii Table of Contents Notice and Disclaimer ................................................................................................................................ -
Embryonic Development of Percula Clownfish, Amphiprion Percula (Lacepede, 1802)
Middle-East Journal of Scientific Research 4 (2): 84-89, 2009 ISSN 1990-9233 © IDOSI Publications, 2009 Embryonic Development of Percula Clownfish, Amphiprion percula (Lacepede, 1802) 11K.V. Dhaneesh, T.T. Ajith Kumar and 2T. Shunmugaraj 1Centre of Advanced Study in Marine Biology, Annamalai University Parangipettai-608 502, Tamilnadu, India 2Centre for Marine Living Resources and Ecology, Ministry of Earth Sciences, Cochin, Kerala, India Abstract: The Percula clownfish, Amphiprion percula (Lacepede, 1802) were reared in marine ornamental fish hatchery by using estuarine water to study their spawning behaviour, egg deposition and embryonic development. The spawning was recorded year round with the reproductive cycle between 14-21 days. The eggs were adhesive type, capsule shaped and bright orange in colour measuring 2.0-2.3 mm length and 1.0-1.2 mm width containing fat globules. The process of embryonic development was divided into 26 stages based on the morphological characteristics of the developing embryo. The time elapsed for each embryonic developmental stage was recorded. Hatching took place 151-152 hours after fertilization. Key words: Percula clownfish Captive condition Morphology Embryonic development INTRODUCTION transported to the hatchery at Centre of Advanced Study in Marine Biology, Annamalai University, Parangipettai, The anemonefish, Amphiprion percula is a tropical Tamil Nadu, India. For the better health and survival, the coral reef fish belonging to the family Pomacentridae fishes and anemones were packed in individual polythene and sub family Amphiprioninae and they are one of the bags filled with sufficient oxygen. After transportation, most popular attractions in the marine ornamental fish the fishes and anemones were accommodated in a trade. -
(Actinopterygii: Pomacentridae) from Micronesia, with Comments on Its Phylogenetic Relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1
Liu et al. Zoological Studies 2013, 52:6 http://www.zoologicalstudies.com/content/52/1/6 RESEARCH Open Access A new species of Pomacentrus (Actinopterygii: Pomacentridae) from Micronesia, with comments on its phylogenetic relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1 Abstract Background: Many widely distributed coral reef fishes exhibit cryptic lineages across their distribution. Previous study revealed a cryptic lineage of Pomacentrus coelestis mainly distributed in the area of Micronesia. Herein, we attempted to use molecular and morphological approaches to descript a new species of Pomacentrus. Results: The morphological comparisons have been conducted between cryptic species and P. coelestis. Pomacentrus micronesicus sp. nov. is characterized by 13 to 16 (typically 15) anal fin rays (vs. 13 to 15, typically 14 rays in P. coelestis) and 15 or 16 rakers on the lower limb of the first gill arch (vs. 13 or 14 rakers in P. coelestis). Divergence in cytochrome oxidase subunit I sequences of 4.3% is also indicative of species-level separation of P. micronesicus and P. coelestis. Conclusions: P. micronesicus sp.nov.isdescribedfromtheMarshallIslands, Micronesia on the basis of 21 specimens. Both morphological and genetic evidences support its distinction as a separate species from P. coelestis. Keywords: Cryptic species; Pomacentrus micronesicus; Speciation Background Japan and is widely distributed in the Indo-Pacific region Marine organisms that are morphologically undistinguish- (Allen 1991). Liu et al. (2012) conducted a phylogeographic able but genetically distinct are known as ‘cryptic species’ study of P. coelestis across its distribution using both (Knowlton 2000). In the past decade, DNA sequencing the mtDNA control region and microsatellite loci as has provided an independent means of testing the validity genetic markers and revealed two deeply divergent clades; of existing taxonomic units, revealing cases of inappropriate the first clade was shown to encompass the ‘true’ P. -
A Dissertation Entitled Evolution, Systematics
A Dissertation Entitled Evolution, systematics, and phylogeography of Ponto-Caspian gobies (Benthophilinae: Gobiidae: Teleostei) By Matthew E. Neilson Submitted as partial fulfillment of the requirements for The Doctor of Philosophy Degree in Biology (Ecology) ____________________________________ Adviser: Dr. Carol A. Stepien ____________________________________ Committee Member: Dr. Christine M. Mayer ____________________________________ Committee Member: Dr. Elliot J. Tramer ____________________________________ Committee Member: Dr. David J. Jude ____________________________________ Committee Member: Dr. Juan L. Bouzat ____________________________________ College of Graduate Studies The University of Toledo December 2009 Copyright © 2009 This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author. _______________________________________________________________________ An Abstract of Evolution, systematics, and phylogeography of Ponto-Caspian gobies (Benthophilinae: Gobiidae: Teleostei) Matthew E. Neilson Submitted as partial fulfillment of the requirements for The Doctor of Philosophy Degree in Biology (Ecology) The University of Toledo December 2009 The study of biodiversity, at multiple hierarchical levels, provides insight into the evolutionary history of taxa and provides a framework for understanding patterns in ecology. This is especially poignant in invasion biology, where the prevalence of invasiveness in certain taxonomic groups could -
Species Are Hypotheses: Avoid Connectivity Assessments Based on Pillars of Sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D
Species are hypotheses: avoid connectivity assessments based on pillars of sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, Magalie Castelin, Anne Chenuil, Christophe Destombe, Didier Forcioli, Myriam Valero, et al. To cite this version: Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, et al.. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology, Wiley, 2015, 24 (3), pp.525-544. hal-02002440 HAL Id: hal-02002440 https://hal.archives-ouvertes.fr/hal-02002440 Submitted on 31 Jan 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Molecular Ecology Species are hypotheses : avoid basing connectivity assessments on pillars of sand. Journal:For Molecular Review Ecology Only Manuscript ID: Draft Manuscript Type: Invited Reviews and Syntheses Date Submitted by the Author: n/a Complete List of Authors: Pante, Eric; UMR 7266 CNRS - Université de La Rochelle, Puillandre, Nicolas; MNHN, Systematique & Evolution Viricel, Amélia; UMR 7266 CNRS - -
A List of Common and Scientific Names of Fishes from the United States And
t a AMERICAN FISHERIES SOCIETY QL 614 .A43 V.2 .A 4-3 AMERICAN FISHERIES SOCIETY Special Publication No. 2 A List of Common and Scientific Names of Fishes -^ ru from the United States m CD and Canada (SECOND EDITION) A/^Ssrf>* '-^\ —---^ Report of the Committee on Names of Fishes, Presented at the Ei^ty-ninth Annual Meeting, Clearwater, Florida, September 16-18, 1959 Reeve M. Bailey, Chairman Ernest A. Lachner, C. C. Lindsey, C. Richard Robins Phil M. Roedel, W. B. Scott, Loren P. Woods Ann Arbor, Michigan • 1960 Copies of this publication may be purchased for $1.00 each (paper cover) or $2.00 (cloth cover). Orders, accompanied by remittance payable to the American Fisheries Society, should be addressed to E. A. Seaman, Secretary-Treasurer, American Fisheries Society, Box 483, McLean, Virginia. Copyright 1960 American Fisheries Society Printed by Waverly Press, Inc. Baltimore, Maryland lutroduction This second list of the names of fishes of The shore fishes from Greenland, eastern the United States and Canada is not sim- Canada and the United States, and the ply a reprinting with corrections, but con- northern Gulf of Mexico to the mouth of stitutes a major revision and enlargement. the Rio Grande are included, but those The earlier list, published in 1948 as Special from Iceland, Bermuda, the Bahamas, Cuba Publication No. 1 of the American Fisheries and the other West Indian islands, and Society, has been widely used and has Mexico are excluded unless they occur also contributed substantially toward its goal of in the region covered. In the Pacific, the achieving uniformity and avoiding confusion area treated includes that part of the conti- in nomenclature.