Coral Reef Fishes Exhibit Strong Responses to a Habitat Boundary
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Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011
August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai August 2012 Indo-Pacific Division Indonesia Report No 6/12 Coral Reef Monitoring in Kofiau and Boo Islands Marine Protected Area, Raja Ampat, West Papua. 2009—2011 Report Compiled By: Purwanto, Muhajir, Joanne Wilson, Rizya Ardiwijaya, and Sangeeta Mangubhai Published by: TheNatureConservancy,Indo-PacificDivision Purwanto:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] Muhajir: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia.Email: [email protected] JoanneWilson: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur,Bali, Indonesia. RizyaArdiwijaya:TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2,Sanur, Bali,Indonesia.Email: [email protected] SangeetaMangubhai: TheNatureConservancy,IndonesiaMarineProgram,Jl.Pengembak2, Sanur,Bali,Indonesia.Email: [email protected] Suggested Citation: Purwanto,Muhajir,Wilson,J.,Ardiwijaya,R.,Mangubhai,S.2012.CoralReefMonitoringinKofiau andBooIslandsMarineProtectedArea,RajaAmpat,WestPapua.2009-2011.TheNature Conservancy,Indo-PacificDivision,Indonesia.ReportN,6/12.50pp. © 2012012012201 222 The Nature Conservancy AllRightsReserved.Reproductionforanypurposeisprohibitedwithoutpriorpermission. AllmapsdesignedandcreatedbyMuhajir. CoverPhoto: -
Petition to List Eight Species of Pomacentrid Reef Fish, Including the Orange Clownfish and Seven Damselfish, As Threatened Or Endangered Under the U.S
BEFORE THE SECRETARY OF COMMERCE PETITION TO LIST EIGHT SPECIES OF POMACENTRID REEF FISH, INCLUDING THE ORANGE CLOWNFISH AND SEVEN DAMSELFISH, AS THREATENED OR ENDANGERED UNDER THE U.S. ENDANGERED SPECIES ACT Orange Clownfish (Amphiprion percula) photo by flickr user Jan Messersmith CENTER FOR BIOLOGICAL DIVERSITY SUBMITTED SEPTEMBER 13, 2012 Notice of Petition Rebecca M. Blank Acting Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave, NW Washington, D.C. 20230 Email: [email protected] Samuel Rauch Acting Assistant Administrator for Fisheries NOAA Fisheries National Oceanographic and Atmospheric Administration 1315 East-West Highway Silver Springs, MD 20910 E-mail: [email protected] PETITIONER Center for Biological Diversity 351 California Street, Suite 600 San Francisco, CA 94104 Tel: (415) 436-9682 _____________________ Date: September 13, 2012 Shaye Wolf, Ph.D. Miyoko Sakashita Center for Biological Diversity Pursuant to Section 4(b) of the Endangered Species Act (“ESA”), 16 U.S.C. § 1533(b), Section 553(3) of the Administrative Procedures Act, 5 U.S.C. § 553(e), and 50 C.F.R.§ 424.14(a), the Center for Biological Diversity hereby petitions the Secretary of Commerce and the National Oceanographic and Atmospheric Administration (“NOAA”), through the National Marine Fisheries Service (“NMFS” or “NOAA Fisheries”), to list eight pomacentrid reef fish and to designate critical habitat to ensure their survival. The Center for Biological Diversity (“Center”) is a non-profit, public interest environmental organization dedicated to the protection of imperiled species and their habitats through science, policy, and environmental law. The Center has more than 350,000 members and online activists throughout the United States. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Fish Biomass in Tropical Estuaries: Substantial Variation in Food Web Structure, Sources of Nutrition and Ecosystem-Supporting Processes
Estuaries and Coasts DOI 10.1007/s12237-016-0159-0 Fish Biomass in Tropical Estuaries: Substantial Variation in Food Web Structure, Sources of Nutrition and Ecosystem-Supporting Processes Marcus Sheaves1,2 & Ronald Baker1,2 & Kátya G. Abrantes1 & Rod M. Connolly3 Received: 22 January 2016 /Revised: 1 June 2016 /Accepted: 27 August 2016 # Coastal and Estuarine Research Federation 2016 Abstract Quantification of key pathways sustaining ecosys- sources of nutrition and probably unequal flow of productivity tem function is critical for underpinning informed decisions into higher levels of the food web in different parts of the on development approvals, zoning and offsets, ecosystem res- estuary. In turn, this suggests substantial qualitative and quan- toration and for meaningful environmental assessments and titative differences in ecosystem-supporting processes in dif- monitoring. To develop a more quantitative understanding of ferent estuary reaches. the importance and variation in food webs and nutrient flows in tropical estuaries, we investigated the spatio-temporal dis- Keywords Mangrove . Nekton . Penaeid . Spatial tribution of biomass of fish across 28 mangrove-lined estuar- prioritisation . Restoration . Offset ies in tropical Australia. We evaluated the extent to which nekton biomass in tropical estuaries responded to spatial and temporal factors and to trophic identity. Biomass was domi- Introduction nated by two trophic groups, planktivores and macrobenthos feeders. Contributions by other trophic groups, such as Although their high productivity and nursery-ground values detritivores and microbenthos feeders, were more variable. make estuaries and their associated wetlands among the most Total biomass and the biomass of all major trophic groups valuable ecosystems on the planet (Choi and Wang 2004; were concentrated in downstream reaches of estuaries. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Pomacentridae)
Zoologischer Anzeiger 264 (2016) 47–55 Contents lists available at ScienceDirect Zoologischer Anzeiger jou rnal homepage: www.elsevier.com/locate/jcz Insight into biting diversity to capture benthic prey in damselfishes (Pomacentridae) Damien Olivier ∗, Eric Parmentier, Bruno Frédérich Laboratoire de Morphologie Fonctionnelle et Evolutive, AFFISH Research Center, Institut de Chimie (B6C) Université de Liege, B-4000 Liege, Belgium a r t i c l e i n f o a b s t r a c t Article history: The cerato-mandibular (c-md) ligament, joining the hyoid bar to the coronoid process of the angular, Received 9 May 2016 allows Pomacentridae to slam their mouth shut in a few milliseconds. Previous works have revealed that Received in revised form 13 July 2016 such a mechanism is used to feed, but some variability in biting patterns has been observed between two Accepted 13 July 2016 damselfish species. The pelagic feeder Amphiprion clarkii performs two different kinematic patterns to Available online 15 July 2016 bite fixed prey, one that does not depend on the c-md ligament (biting-1) and one that does (biting-2). The benthic feeder Stegastes rectifraenum only performs biting-2. The present study aims to shed light on Keywords: the occurrence of biting-2 in the feeding behaviour of Pomacentridae. To test our hypothesis that biting-2 Cerato-mandibular ligament would be the only biting pattern for benthic feeders, we compared biting behaviours among four species: Feeding behaviour one pelagic feeder, A. clarkii, and three benthic feeders, Neoglyphidodon nigroris, Stegastes leucostictus and Functional morphology Grazing S. rectifraenum. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
(Actinopterygii: Pomacentridae) from Micronesia, with Comments on Its Phylogenetic Relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1
Liu et al. Zoological Studies 2013, 52:6 http://www.zoologicalstudies.com/content/52/1/6 RESEARCH Open Access A new species of Pomacentrus (Actinopterygii: Pomacentridae) from Micronesia, with comments on its phylogenetic relationships Shang-Yin Vanson Liu1,2*†, Hsuan-Ching Hans Ho3† and Chang-Feng Dai1 Abstract Background: Many widely distributed coral reef fishes exhibit cryptic lineages across their distribution. Previous study revealed a cryptic lineage of Pomacentrus coelestis mainly distributed in the area of Micronesia. Herein, we attempted to use molecular and morphological approaches to descript a new species of Pomacentrus. Results: The morphological comparisons have been conducted between cryptic species and P. coelestis. Pomacentrus micronesicus sp. nov. is characterized by 13 to 16 (typically 15) anal fin rays (vs. 13 to 15, typically 14 rays in P. coelestis) and 15 or 16 rakers on the lower limb of the first gill arch (vs. 13 or 14 rakers in P. coelestis). Divergence in cytochrome oxidase subunit I sequences of 4.3% is also indicative of species-level separation of P. micronesicus and P. coelestis. Conclusions: P. micronesicus sp.nov.isdescribedfromtheMarshallIslands, Micronesia on the basis of 21 specimens. Both morphological and genetic evidences support its distinction as a separate species from P. coelestis. Keywords: Cryptic species; Pomacentrus micronesicus; Speciation Background Japan and is widely distributed in the Indo-Pacific region Marine organisms that are morphologically undistinguish- (Allen 1991). Liu et al. (2012) conducted a phylogeographic able but genetically distinct are known as ‘cryptic species’ study of P. coelestis across its distribution using both (Knowlton 2000). In the past decade, DNA sequencing the mtDNA control region and microsatellite loci as has provided an independent means of testing the validity genetic markers and revealed two deeply divergent clades; of existing taxonomic units, revealing cases of inappropriate the first clade was shown to encompass the ‘true’ P. -
A Review of Planktivorous Fishes: Their Evolution, Feeding Behaviours, Selectivities, and Impacts
Hydrobiologia 146: 97-167 (1987) 97 0 Dr W. Junk Publishers, Dordrecht - Printed in the Netherlands A review of planktivorous fishes: Their evolution, feeding behaviours, selectivities, and impacts I Xavier Lazzaro ORSTOM (Institut Français de Recherche Scientifique pour le Développement eri Coopération), 213, rue Lu Fayette, 75480 Paris Cedex IO, France Present address: Laboratorio de Limrzologia, Centro de Recursos Hidricob e Ecologia Aplicada, Departamento de Hidraulica e Sarzeamento, Universidade de São Paulo, AV,DI: Carlos Botelho, 1465, São Carlos, Sï? 13560, Brazil t’ Mail address: CI? 337, São Carlos, SI? 13560, Brazil Keywords: planktivorous fish, feeding behaviours, feeding selectivities, electivity indices, fish-plankton interactions, predator-prey models Mots clés: poissons planctophages, comportements alimentaires, sélectivités alimentaires, indices d’électivité, interactions poissons-pltpcton, modèles prédateurs-proies I Résumé La vision classique des limnologistes fut de considérer les interactions cntre les composants des écosystè- mes lacustres comme un flux d’influence unidirectionnel des sels nutritifs vers le phytoplancton, le zoo- plancton, et finalement les poissons, par l’intermédiaire de processus de contrôle successivement physiqucs, chimiques, puis biologiques (StraSkraba, 1967). L‘effet exercé par les poissons plaiictophages sur les commu- nautés zoo- et phytoplanctoniques ne fut reconnu qu’à partir des travaux de HrbáEek et al. (1961), HrbAEek (1962), Brooks & Dodson (1965), et StraSkraba (1965). Ces auteurs montrèrent (1) que dans les étangs et lacs en présence de poissons planctophages prédateurs visuels. les conimuiiautés‘zooplanctoniques étaient com- posées d’espèces de plus petites tailles que celles présentes dans les milieux dépourvus de planctophages et, (2) que les communautés zooplanctoniques résultantes, composées d’espèces de petites tailles, influençaient les communautés phytoplanctoniques. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Cascading Effects of Predator Richness
REVIEWS REVIEWS REVIEWS Cascading effects of predator richness John F Bruno1* and Bradley J Cardinale2 Biologists have long known that predators play a key role in structuring ecological communities, but recent research suggests that predator richness – the number of genotypes, species, and functional groups that com- prise predator assemblages – can also have cascading effects on communities and ecosystem properties. Changes in predator richness, including the decreases resulting from extinctions and the increases resulting from exotic invasions, can alter the composition, diversity, and population dynamics of lower trophic levels. However, the magnitude and direction of these effects are highly variable and depend on environmental con- text and natural history, and so are difficult to predict. This is because species at higher trophic levels exhibit many indirect, non-additive, and behavioral interactions. The next steps in predator biodiversity research will be to increase experimental realism and to incorporate current knowledge about the functional role of preda- tor richness into ecosystem management. Front Ecol Environ 2008; 6, doi:10.1890/070136 e know that predators play a vital role in maintain- the effects of changing biological richness at higher Wing the structure and stability of communities and trophic levels, and BEF research is rapidly expanding into that their removal can have a variety of cascading, indi- a more realistic, multi-trophic context (Duffy et al. 2007). rect effects (Terborgh et al. 2001; Duffy 2003; Figure 1). Here, we review the emerging field of predator biodi- But how important is predator richness? Are the numbers versity research, as well as the underlying mechanisms of predator genotypes, species, and functional groups eco- through which predator richness can affect lower trophic logically important properties of predator assemblages? levels and ecosystem properties. -
Orientation of Pelagic Larvae of Coral-Reef Fishes in the Ocean
MARINE ECOLOGY PROGRESS SERIES Vol. 252: 239–253, 2003 Published April 30 Mar Ecol Prog Ser Orientation of pelagic larvae of coral-reef fishes in the ocean Jeffrey M. Leis*, Brooke M. Carson-Ewart Ichthyology, and Centre for Biodiversity and Conservation Research, Australian Museum, 6 College St, Sydney, New South Wales 2010, Australia ABSTRACT: During the day, we used settlement-stage reef-fish larvae from light-traps to study in situ orientation, 100 to 1000 m from coral reefs in water 10 to 40 m deep, at Lizard Island, Great Barrier Reef. Seven species were observed off leeward Lizard Island, and 4 species off the windward side. All but 1 species swam faster than average ambient currents. Depending on area, time, and spe- cies, 80 to 100% of larvae swam directionally. Two species of butterflyfishes Chaetodon plebeius and Chaetodon aureofasciatus swam away from the island, indicating that they could detect the island’s reefs. Swimming of 4 species of damselfishes Chromis atripectoralis, Chrysiptera rollandi, Neo- pomacentrus cyanomos and Pomacentrus lepidogenys ranged from highly directional to non- directional. Only in N. cyanomos did swimming direction differ between windward and leeward areas. Three species (C. atripectoralis, N. cyanomos and P. lepidogenys) were observed in morning and late afternoon at the leeward area, and all swam in a more westerly direction in the late after- noon. In the afternoon, C. atripectoralis larvae were highly directional in sunny conditions, but non- directional and individually more variable in cloudy conditions. All these observations imply that damselfish larvae utilized a solar compass. Caesio cuning and P.