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9 8 9 1 Caenarcaniphilales 9 8 Vampirovibrionales 7 9 9 2 Gastranaerophilales 9 7 Melainabacteria 95 9 9 Obscuribacterales 100 Oxyphotobacteria Sericytochromatia 0.05 Fig. S1. Maximum likelihood tree based on near-full length 16S rRNA genes (>1,200 bp) from the phylum Cyanobacteria. The tree was constructed using program FastTree. A total of 1,096 nucleotide positions were used with the GTR+G substitution model and 100 bootstrap resamplings. Sequences from the termite and cockroach gut samples fell into two orders shown in red. Samples from mammalian gastrointestinal tract 7 1 HM630178 from intestinal tract of herbivorous marine fish Naso tonganus JQ084643 from mice gut tissue CU920275 from mesophilic anaerobic digester which treats municipal wastewater sludge 6 4 GU208308 from Dongping Lake sediment 8 8 JN656845 from hypolimnion (hypoxic bottom) water from permafrost thaw pond KWK12 OTU-11710-MgMjD2 termite Macrotermes gilvus gut JPZV01257543 from whole body of Blatella germanica EF520515 from acid-impacted lake KC432436 from wetland JQ624955 from poplar biomass OTU-05081-DCn2-PRRqX from termite Dicuspiditermes nemorosus and Parrhinotermes sp. gut OTU-08574-SCaX from termite Schedorhinotermes sp. 1 gut OTU-19232-Rm from termite Reticulitermes miyatakei gut OTU-06201-Ra-Ry from termite Reticulitermes amamianus and Reticulitermes yaeyamanus gut OTU-21316-HETt from termite Heterotemes tenuior gut 8 4 OTU-18865-TcM2 from termite Termes comis gut OTU-19838-Tpq from termite Termes propinquus gut OTU-17247-LONl from termite Longitermes longipes gut OTU-21447-PRHj from termite Prorhinotermes japonicus gut OTU-08760-CKsX-PRRqX from termite Ceratokalotermes sp. and Parrhinotermes sp. gut OTU-16999-Ra from termite Reticulitermes amamianus gut OTU-19228-Rm from termite Reticulitermes miyatakei gut OTU-20701-Sv from termite Stolotermes victoriensis gut OTU-14014-SCaX from termite Schedorhinotermes sp. 2 gut OTU-12817-SCs from termite Schedorhinotermes sarawakensis gut EF453917 from termite Nasutitermes sp. gut OTU-13070-SCaX from termite Schedorhinotermes sp. 1 gut OTU-03304-NtTw from termite Nasutitermes takasagoensis gut OTU-04278-NtTw from termite Nasutitermes takasagoensis gut OTU-12118-Gf2 from termite Glyptotermes fuscus gut EF453956 from termite Nasutitermes sp. gut OTU-10360-Nl-Nl2 from termite Nasutitermes longinasus gut OTU-07803-HOSp from termite Hospitalitermes sp. gut 8 8 OTU-13805-HOSb from termite Hospitalitermes sp. 2 gut OTU-03592-Tp from termite Termitogeton planus gut OTU-12199-NtTw from termite Nasutitermes takasagoensis gut OTU-08388-PRRm2 from termite Parrhinotermes microdentiformis gut OTU-09609-HETp from termite Heterotermes paradoxus gut OTU-12792-Zn3-RsTz2 from termite Zootermopsis nevadensis and Reticulitermes speratus gut HM318898 from skin of human Homo sapiens OTU-05909-Cc3 from termite Cryptotermes cavifrons gut OTU-20951-Ntr from termite Nasutitermes toriodiae gut OTU-13172-GBg-HMe from termite Globitermes globosus and Homallotermes eleanorae gut OTU-21496-PRCx from termite Procapritermes sp. gut 7 0 AB089123 from termite Reticulitermes speratus gut JQ072402 from brewery wastewater clarifier outfall wet well 9 6 JX095405 from descending colon ingesta of cow Bos taurus GQ449145 from feces of cow Bos taurus OTU-21389-ORi from termite Oriensubulitermes inanis gut marine sponge 7 7 AB821786 from cattle rumen EU474510 from feces of bighorn sheep Ovis canadensis AB615061 from cattle rumen FJ680800 from MARC beef cattle fecal sample KT952876 from fish Zebrasoma xanthurum gut GQ064443 from skin of human Homo sapiens HM630179 from intestinal tract of herbivorous marine fish Naso tonganus OTU-04808-HOSm from termite Hospitalitermes medioflavus gut OTU-20000-Md2 from termite Mastotermes darwiniensis gut 8 6 OTU-05970-SCs-TGp from termite Schedorhinotermes sarawakensis and Termitogeton planus gut OTU-17104-TGp from termite Termitogeton planus gut OTU-07373-SGt-Tpq from cockroach Salganea taiwanensis and termite Termes propinquus gut 7 2 Tpq-Mel-01 (”Ca. Gastranaerophilus termiticola”) OTU-07911-HOSp from termite Hospitalitermes sp. 1 gut Detectable with OTU-14642-Pn from termite Pericapritermes nitobei gut probe MelTpq-646 9 1 OTU-19367-Tpq from termite Termes propinquus gut 8 8 AB612379 from cattle rumen EU871391 from rumen of cow Bos taurus 8 6 GQ448719 from fecal sample of cow Bos taurus 7 5 FJ684721 from MARC beef cattle fecal sample JQ084869 from NOD2 knockout mice gut tissue 9 9 OTU-00856-HOSb-HOSm from termite Hospitalitermes sp. 2 and Hospitalitermes medioflavus gut OTU-12430-Mm from termite Macrotermes malaccensis gut OTU-14997-Ra from termite Reticulitermes amamianus gut HM630217 from intestinal tract of herbivorous marine fish Naso tonganus Samples from mammalian gastrointestinal tract OTU-06217-CKsX from termite Ceraokalotermes sp. gut OTU-10310-Gs from termite Glyptotermes satsumensis gut OTU-14961-PRRm2 from termite Parrhinotermes microdentiformis gut OTU-15827-Zn3 from termite Zootermposis nevadensis gut OTU-11542-Sv-PRRqX from termite Stolotermes victoriensis and Parrhinotermes sp. gut OTU-12005-PRCx from termite Procapritermes sp. gut OTU-16207-Tc2 from termite Termes comis gut 8 4 OTU-20260-TcM from termite Termes comis gut AF544207 from rumen sample 9 2 AB615027 from cattle rumen 9 9 AB615027 from cattle rumen EF686586 from rumen fluid of Yunnan yellow cattle Bos taurus OTU-20360-Cp from cockroach Cryptocercus punctulatus gut : Cockroaches AB824324 from rumen of swamp buffalo Bubalus bubalis : Mastotermitidae : Archotermopsidae OTU-02817-CKsX from termite Ceratokalotermes sp. gut : Stolotermitidae LC028872 from feces of Thai native cattle : Kalotermitidae 6 1 OTU-15874-Cp from cockroach Cryptocercus punctulatus gut : Rhinotermitidae : Termitidae Continued to OTU-11550-RsTz2 from termite Reticulitermes speratus gut Fig.S2-2 OTU-20080-Pa from cockroach Panesthia angustipennis gut Fig.S2-1 0.05 Continued 6 5 KC163104 from rumen of yak Bos grunniens from Fig.S2-1 9 6 GQ451200 from feces of Yunnan snub-nosed monkey Rhinopithecus bieti GU303703 from rumen contents of HEAN cow (Hereford x Angus) OTU-13788-DRr from termite Drepanotermes rubriceps gut OTU-02378-HOSp-HOSm from termite Hospitalitermes sp. 1 and Hospitalitermes medioflavus gut 6 9 7 3 7 6 OTU-09455-Ntr from termite Nasutitermes toriodiae gut OTU-16640-TcM from termite Termes comis gut OTU-18253-PHm from termite Prohamitermes mirabilis gut OTU-20218-SCmX from termite Schedorhinotermes medioobscurus gut 8 2 OTU-20228-SPEx from termite Speculitermes sp. gut OTU-23126-Tpq from termite Termes propinquus gut OTU-14675-Ra from termite Reticulitermes amamianus gut 7 4 OTU-23100-SCaX from termite Schedorhinotermes sp. 1 gut OTU-19474-HOSm from termite Hospitalitermes medioflavus gut GQ133151 from ASBR reactor treating swine waste KM250940 from biochemical reactor 20-30cm core 9 9 AB494943 from sheep rumen KR067986 from rumen of yak Bos grunniens 7 5 OTU-05986-Gf2 from termite Glyptotermes fuscus gut 7 8 OTU-11641-CKsX from termite Ceratokalotermes sp. gut OTU-17418-PRRqX from termite Parrhinotermes sp. gut OTU-04806-Gs-NinX from termite Glyptotermes satsumensis and Neotermes sp. gut 9 0 OTU-05309-SCaX from termite Schedorhinotermes sp. 1 gut OTU-14285-PHm from termite Prohamitermes mirabilis gut OTU-08630-HOSm from termite Hospitalitermes medioflavus gut OTU-16158-RsTz2 from termite Reticulitermes speratus gut KJ874130 from equine reproductive tract JN513216 from Guerrero Negro Hypersaline Mat 08 9 6 HQ153911 from white microbial film on pebble substrate in the aphotic zone of a shallow hydrothermal vent KF758589 from ocean water JN487386 from Guerrero Negro Hypersaline Mat 06 7 3 Guerrero Negro Hypersaline Mat AB806170 from ocean drilling core sample Japan Shimokita Penninsula offshore Guerrero Negro Hypersaline Mat JQ611100 from biofilm near yellow vent off Kueishan Island 7 2 FR828711 from Chattam municipal waste water treatment plant 9 5 FR853013 from active hydrothermal chimney in Dudley site of Juan de Fuca Ridge 9 8 JN435590 from Guerrero Negro Hypersaline Mat 01 JN448577 from Guerrero Negro Hypersaline Mat 02 9 8 Guerrero Negro Hypersaline Mat 9 8 Guerrero Negro Hypersaline Mat KC358057 from large-discharge carbonate springs in Mojave Desert KC358460 from roundwater from tectonically-formed cavern in Devils Hole water column JN514452 from Guerrero Negro Hypersaline Mat 08 JQ625024 from poplar biomass Guerrero Negro Hypersaline Mat Guerrero Negro Hypersaline Mat 8 6 JX221840 from subsurface aquifer sediment JX223309 from subsurface aquifer sediment JN626528 from methane seep under ice cover in Lake Qalluuraq Alaska 6 5 KM410581 from biofilm in subsurface sulfidic cave stream AB240501 from root-base of phragmites at Sosei River in Sapporo, Japan JN445974 from Guerrero Negro Hypersaline Mat 02 9 9 AB240326 from rhizosphere biofilm of lab-scale reed bed reactor AF289160 from water in Parker River, USA AJ853587 from landfill leachate 9 2 JX224053 from subsurface aquifer sediment : Cockroaches JQ624966 from poplar biomass : Mastotermitidae 9 8 KJ578047 from soil in Yong Ding river : Archotermopsidae HQ178778 from sediment in Central Park, USA : Stolotermitidae : Kalotermitidae Guerrero Negro Hypersaline Mat : Rhinotermitidae : Termitidae JQ861864 from diesel-contaminated ground water OTU-14988-PRCx from termite Procapritermes sp. gut OTU-11644-CKsX-SCs from termite Ceratokalotermes sp. and Schedorhinotermes sarawakensis gut 7 4 OTU-22558-MgMjD2 from termite Macrotermes gilvus gut 0.05 Fig. S2-2. Phylogenetic positions of 16S rRNA gene sequences