A Theory of Evolution Above the Species Level (Paleontology/Paleobiology/Speciation) STEVEN M
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Lineages, Splits and Divergence Challenge Whether the Terms Anagenesis and Cladogenesis Are Necessary
Biological Journal of the Linnean Society, 2015, , – . With 2 figures. Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary FELIX VAUX*, STEVEN A. TREWICK and MARY MORGAN-RICHARDS Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand Received 3 June 2015; revised 22 July 2015; accepted for publication 22 July 2015 Using the framework of evolutionary lineages to separate the process of evolution and classification of species, we observe that ‘anagenesis’ and ‘cladogenesis’ are unnecessary terms. The terms have changed significantly in meaning over time, and current usage is inconsistent and vague across many different disciplines. The most popular definition of cladogenesis is the splitting of evolutionary lineages (cessation of gene flow), whereas anagenesis is evolutionary change between splits. Cladogenesis (and lineage-splitting) is also regularly made synonymous with speciation. This definition is misleading as lineage-splitting is prolific during evolution and because palaeontological studies provide no direct estimate of gene flow. The terms also fail to incorporate speciation without being arbitrary or relative, and the focus upon lineage-splitting ignores the importance of divergence, hybridization, extinction and informative value (i.e. what is helpful to describe as a taxon) for species classification. We conclude and demonstrate that evolution and species diversity can be considered with greater clarity using simpler, more transparent terms than anagenesis and cladogenesis. Describing evolution and taxonomic classification can be straightforward, and there is no need to ‘make words mean so many different things’. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 00, 000–000. -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
A Framework for Post-Phylogenetic Systematics
A FRAMEWORK FOR POST-PHYLOGENETIC SYSTEMATICS Richard H. Zander Zetetic Publications, St. Louis Richard H. Zander Missouri Botanical Garden P.O. Box 299 St. Louis, MO 63166 [email protected] Zetetic Publications in St. Louis produces but does not sell this book. Any book dealer can obtain a copy for you through the usual channels. Resellers please contact CreateSpace Independent Publishing Platform of Amazon. ISBN-13: 978-1492220404 ISBN-10: 149222040X © Copyright 2013, all rights reserved. The image on the cover and title page is a stylized dendrogram of paraphyly (see Plate 1.1). This is, in macroevolutionary terms, an ancestral taxon of two (or more) species or of molecular strains of one taxon giving rise to a descendant taxon (unconnected comma) from one ancestral branch. The image on the back cover is a stylized dendrogram of two, genus-level speciational bursts or dis- silience. Here, the dissilient genus is the basic evolutionary unit (see Plate 13.1). This evolutionary model is evident in analysis of the moss Didymodon (Chapter 8) through superoptimization. A super- generative core species with a set of radiative, specialized descendant species in the stylized tree com- promises one genus. In this exemplary image; another genus of similar complexity is generated by the core supergenerative species of the first. TABLE OF CONTENTS Preface..................................................................................................................................................... 1 Acknowledgments.................................................................................................................................. -
Genetic Structure and Eco-Geographical Differentiation of Lancea Tibetica in the Qinghai-Tibetan Plateau
G C A T T A C G G C A T genes Article Genetic Structure and Eco-Geographical Differentiation of Lancea tibetica in the Qinghai-Tibetan Plateau Xiaofeng Chi 1,2 , Faqi Zhang 1,2,* , Qingbo Gao 1,2, Rui Xing 1,2 and Shilong Chen 1,2,* 1 Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810001, China; [email protected] (X.C.); [email protected] (Q.G.); [email protected] (R.X.) 2 Qinghai Provincial Key Laboratory of Crop Molecular Breeding, Xining 810001, China * Correspondence: [email protected] (F.Z.); [email protected] (S.C.) Received: 14 December 2018; Accepted: 24 January 2019; Published: 29 January 2019 Abstract: The uplift of the Qinghai-Tibetan Plateau (QTP) had a profound impact on the plant speciation rate and genetic diversity. High genetic diversity ensures that species can survive and adapt in the face of geographical and environmental changes. The Tanggula Mountains, located in the central of the QTP, have unique geographical significance. The aim of this study was to investigate the effect of the Tanggula Mountains as a geographical barrier on plant genetic diversity and structure by using Lancea tibetica. A total of 456 individuals from 31 populations were analyzed using eight pairs of microsatellite makers. The total number of alleles was 55 and the number per locus ranged from 3 to 11 with an average of 6.875. The polymorphism information content (PIC) values ranged from 0.2693 to 0.7761 with an average of 0.4378 indicating that the eight microsatellite makers were efficient for distinguishing genotypes. -
Species Change Over Time
KEY CONCEPT Species change over time. BEFORE, you learned NOW, you will learn • Fossils are evidence of earlier • About early ideas and observa- life tions on evolution • More complex organisms have • How Darwin developed his developed over time theory of natural selection • Mass extinctions contributed to • How new species arise from the development of Earth’s older species history VOCABULARY THINK ABOUT evolution p. 797 How have telephones changed over time? natural selection p. 801 adaptation p. 802 Today people across the world can speciation p. 804 communicate in many different ways. One of the most common ways is over the telephone. Looking at the two pictures, can you describe how this form of communication has changed over time? Scientists explore the concept of evolution. MAIN IDEA AND DETAILS In a general sense, evolution involves a change over time. You could Make a chart for the main say that the way humans communicate has evolved. Certainly idea scientists explore the concept of evolution. telephones have changed over time. The first telephones were the size Include details about scien- of a shoebox. Today a telephone can fit in the palm of your hand and tists’ observations. can send images as well as sound. In biology,evolution refers to the process though which species change over time. The change results from a change in the genetic material of an organism and is passed from one generation to the next. Check Your Reading What is evolution? Chapter 23: History of Life 797 Early Ideas reading tip In the early 1800s, a French scientist named Jean Baptiste de Lamarck The word acquire comes was the first scientist to propose a model of how life evolves. -
A Model of Mass Extinction
A model of mass extinction M. E. J. Newman Cornell Theory Center, Rhodes Hall, Ithaca, NY 14853. and Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501. Abstract A number of authors have in recent years proposed that the processes of macroevo- lution may give rise to self-organized critical phenomena which could have a sig- nificant effect on the dynamics of ecosystems. In particular it has been suggested that mass extinction may arise through a purely biotic mechanism as the result of so-called coevolutionary avalanches. In this paper we first explore the empirical evidence which has been put forward in favor of this conclusion. The data center principally around the existence of power-law functional forms in the distribution of the sizes of extinction events and other quantities. We then propose a new math- ematical model of mass extinction which does not rely on coevolutionary effects and in which extinction is caused entirely by the action of environmental stresses on species. In combination with a simple model of species adaptation we show that this process can account for all the observed data without the need to invoke coevo- lution and critical processes. The model also makes some independent predictions, such as the existence of “aftershock” extinctions in the aftermath of large mass extinction events, which should in theory be testable against the fossil record. arXiv:adap-org/9702003v1 12 Feb 1997 1 Introduction Building on ideas first put forward by Kauffman (1992), there has in re- cent years been increasing interest in the possibility that evolution may be a self-organized critical phenomenon (Sol´eand Bascompte 1996, Bak and Paczuski 1996). -
September 2009
Coaster Brook Trout (Salvelinus fontinalis) 12-Month Finding Decision Document SEPTEMBER 2009 0 Coaster Brook Trout 12-Month Finding Decsion Document TABLE OF CONTENTS PURPOSE ............................................................................................................................................................... 1 BACKGROUND ........................................................................................................................................................... 1 DECISION STRUCTURE ........................................................................................................................................... 4 DECISION PROBLEM .................................................................................................................................................... 5 OBJECTIVES ................................................................................................................................................................. 7 ALTERNATIVES ............................................................................................................................................................. 7 CONSEQUENCES ........................................................................................................................................................ 10 TRADE-OFFS .............................................................................................................................................................. 13 DISTINCT POPULATION ANALYSIS ................................................................................................................. -
Speciation Free Download
SPECIATION FREE DOWNLOAD Jerry A. Coyne,H. Allen Orr | 480 pages | 09 Apr 2010 | Sinauer Associates Inc.,U.S. | 9780878930890 | English | Sunderland, United States speciation Categories : Speciation Ecology Evolutionary biology Sexual selection. Molecular Ecology. Hybrid zones are regions where diverged populations meet and interbreed. A Series of Books in Biology. John L. Buffalo grass seeds pass on the characteristics of the members in that region to offspring. Though vital to the concept of evolution, the Speciation "species" has been defined several different ways throughout history. Anolis lizardsa classroom activity for grades Speciation 30, Adaptation Natural selection Sexual selection Ecological speciation Assortative mating Haldane's rule. If an isolated population such as this survives its genetic upheavalsand subsequently expands into an unoccupied niche, or into a niche in which it has an advantage over its competitors, a new species, or subspecies, will Speciation come in being. The first and most commonly used sense refers to the "birth" of new species. Speciation possible Speciation of sympatric speciation is the apple maggot, an insect that lays its eggs inside the fruit of an apple, causing it to rot. Defining a species. See Speciation, and Darwin's dilemma. Pretty Fly The Hawaiian islands are home to Speciation of the most stunning Speciation of speciation. Ancestral wild cabbage. Plant Speciation. View Article. Princeton University Press. Fields and applications Applications of evolution Biosocial criminology Ecological genetics Evolutionary Speciation Evolutionary anthropology Evolutionary Speciation Evolutionary ecology Evolutionary economics Evolutionary epistemology Evolutionary ethics Evolutionary game theory Evolutionary linguistics Evolutionary medicine Evolutionary neuroscience Evolutionary physiology Evolutionary psychology Experimental evolution Phylogenetics Paleontology Selective breeding Speciation experiments Sociobiology Systematics Universal Darwinism. -
Speciation and Recessive Mutations for BMC Biology
Essay: On the close relationship between speciation, inbreeding and recessive mutations. Etienne Joly, [email protected], Toulouse, September 2010 All the ideas developed in this essay are relatively simple, and most of them are related to many Foreword previously published works. So much work, however, This past year, 2009, was the Darwin year, celebrating has already been published on evolution and speciation the 200th anniversary of Charles Darwin's birth, and 150 that an autodidactic newcomer such as myself could years since the publication of his fabulous milestone not hope to read, let alone understand and remember all book, ‘The Origin of Species’ (to which I will the primary papers published previously on evolution subsequently refer to as ‘The Origin’). At the start of and speciation. If I have failed to acknowledge 2009, I was inhabited by a nagging ethical concern : how previous works developing ideas related to those put would humans deal with a situation where a group of forward here, the reader can be assured that this was individuals found themselves fertile among one another, not done maliciously but simply as a result of my but with limited fertility with the rest of the human race ? relative naivety on the subject. I do, however, hold the In other words, could speciation occur within the human firm conviction that, if some of the ideas developed in race ? This concern sprouted from the idea that this essay prove to be correct and relatively novel, it chromosomal rearrangements seemed to me like a very was only possible because of this naivety. -
How Important Are Structural Variants for Speciation?
G C A T T A C G G C A T genes Review How Important Are Structural Variants for Speciation? Linyi Zhang 1,*, Radka Reifová 2, Zuzana Halenková 2 and Zachariah Gompert 1 1 Department of Biology, Utah State University, Logan, UT 84322, USA; [email protected] 2 Department of Zoology, Faculty of Science, Charles University, 12800 Prague, Czech Republic; [email protected] (R.R.); [email protected] (Z.H.) * Correspondence: [email protected] Abstract: Understanding the genetic basis of reproductive isolation is a central issue in the study of speciation. Structural variants (SVs); that is, structural changes in DNA, including inversions, translocations, insertions, deletions, and duplications, are common in a broad range of organisms and have been hypothesized to play a central role in speciation. Recent advances in molecular and statistical methods have identified structural variants, especially inversions, underlying ecologically important traits; thus, suggesting these mutations contribute to adaptation. However, the contribu- tion of structural variants to reproductive isolation between species—and the underlying mechanism by which structural variants most often contribute to speciation—remain unclear. Here, we review (i) different mechanisms by which structural variants can generate or maintain reproductive isolation; (ii) patterns expected with these different mechanisms; and (iii) relevant empirical examples of each. We also summarize the available sequencing and bioinformatic methods to detect structural variants. Lastly, we suggest empirical approaches and new research directions to help obtain a more complete assessment of the role of structural variants in speciation. Citation: Zhang, L.; Reifová, R.; Keywords: reproductive isolation; hybridization; suppressed recombination Halenková, Z.; Gompert, Z. -
Origin of Species Before Origin of Life: the Role of Speciation in Chemical Evolution
life Review Origin of Species before Origin of Life: The Role of Speciation in Chemical Evolution Tony Z. Jia 1,2,* , Melina Caudan 1 and Irena Mamajanov 1,* 1 Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1-IE-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan; [email protected] 2 Blue Marble Space Institute of Science, 1001 4th Ave., Suite 3201, Seattle, WA 98154, USA * Correspondence: [email protected] (T.Z.J.); [email protected] (I.M.) Abstract: Speciation, an evolutionary process by which new species form, is ultimately responsible for the incredible biodiversity that we observe on Earth every day. Such biodiversity is one of the critical features which contributes to the survivability of biospheres and modern life. While speciation and biodiversity have been amply studied in organismic evolution and modern life, it has not yet been applied to a great extent to understanding the evolutionary dynamics of primitive life. In particular, one unanswered question is at what point in the history of life did speciation as a phenomenon emerge in the first place. Here, we discuss the mechanisms by which speciation could have occurred before the origins of life in the context of chemical evolution. Specifically, we discuss that primitive compartments formed before the emergence of the last universal common ancestor (LUCA) could have provided a mechanism by which primitive chemical systems underwent speciation. In particular, we introduce a variety of primitive compartment structures, and associated functions, that may have plausibly been present on early Earth, followed by examples of both discriminate and indiscriminate speciation affected by primitive modes of compartmentalization. -
Biology 3 Origin and Diversity of Life
Biology 3 Origin and Diversity of Life Dr. Terence Lee What is Life? Virus? Ice Crystal? 1 What is necessary for Life? CONDITIONS ON EARTH AT THE TIME LIFE BEGAN The early atmosphere differed from that of today, and contained large amounts of carbon dioxide, nitrogen, methane, ammonia, hydrogen, and hydrogen sulfide. Small organic molecules eventually formed, providing the building blocks of life. THE UREY-MILLER EXPERIMENT In 1953, Stanley Miller and Harold Urey developed a simple four- step experiment that demonstrated how complex organic molecules could have arisen in earth’s early environment. 2 THE UREY-MILLER EXPERIMENT 1 They created a model of the chemicals present in the "warm little pond" and atmosphere early in earth's history: H 2, CH 4 (methane), and NH 3 (ammonia). 2 The atmosphere was subjected to sparks, to simulate lightning. 3 The atmosphere was cooled so that any compounds in it would rain back down into the water. 4 They examined the water, looking for organic molecules. Electrical charge 2 1 3 Cool 4 Heat Within a matter of days they discovered many organic molecules (including five different amino acids) in their primordial sea. RNA World Hypothesis • The world may have been filled with RNA- based life… 3 Why are cell membranes important? • Allow for higher concentrations of chemicals inside the cell relative to the outside. WHAT MAKES A SPECIES? SPECIES ARE • populations of organisms that interbreed with each other, • or could possibly breed, under natural conditions, • and are reproductively isolated from other such groups. Reproductive Isolation • Hybrids are bad. 4 Reproductive Isolation • Two ways to prevent hybrids: 1.