PAVLEK & MAMMOLA 2020: Niche-Based Processes Explaining
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Taxonomic Revision and Insights Into the Speciation Mode of the Spider Dysdera Erythrina Species-Complex (Araneae&Thinsp;:&A
AUTHORS’ PAGE PROOFS: NOT FOR CIRCULATION CSIRO PUBLISHING Invertebrate Systematics http://dx.doi.org/10.1071/IS16071 Taxonomic revision and insights into the speciation mode of the spider Dysdera erythrina species-complex (Araneae : Dysderidae): sibling species with sympatric distributions Milan Rezá cA,G, Miquel A. Arnedo B, Vera Opatova B,C,D, Jana MusilováA,E, Veronika Rezá cová F and Jirí Král D ABiodiversity Lab, Crop Research Institute, Drnovská 507, CZ-161 06 Prague 6-Ruzyne, Czechia. BDepartment of Animal Biology & Biodiversity Research Institute, Universitat de Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain. CDepartment of Zoology, Faculty of Science, Charles University in Prague, Vinicná 7, CZ-128 44 Prague 2, Czechia. DDepartment of Biological Sciences and Auburn University Museum of Natural History, Auburn University, Auburn, AL 36849, USA. ELaboratory of Arachnid Cytogenetics, Department of Genetics and Microbiology, Faculty of Science, Charles University in Prague, Vinicná 5, CZ-128 44 Prague 2, Czechia. FLaboratory of Fungal Biology, Institute of Microbiology, Academy of Sciences of the Czech Republic, CZ-142 20 Prague, Czechia. GCorresponding author. Email: [email protected] ONLY Abstract. The genus Dysdera Latreille, 1804, a species-rich group of spiders that includes specialised predators of woodlice, contains several complexes of morphologically similar sibling species. Here we investigate species limits in the D. erythrina (Walckenaer, 1802) complex by integrating phenotypic, cytogenetic and molecular data, and use this information to gain further knowledge on its origin and evolution. We describe 16 new species and redescribe four 5 poorly known species belonging to this clade. The distribution of most of the species in the complex is limited to southern France and thenorth-eastern Iberian Peninsula. -
The Study of Hidden Habitats Sheds Light on Poorly Known Taxa: Spiders of the Mesovoid Shallow Substratum
A peer-reviewed open-access journal ZooKeys 841: 39–59 (2019)The study of hidden habitats sheds light on poorly known taxa... 39 doi: 10.3897/zookeys.841.33271 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research The study of hidden habitats sheds light on poorly known taxa: spiders of the Mesovoid Shallow Substratum Enrique Ledesma1, Alberto Jiménez-Valverde1, Alberto de Castro2, Pablo Aguado-Aranda1, Vicente M. Ortuño1 1 Research Team on Soil Biology and Subterranean Ecosystems, Department of Life Science, Faculty of Science, University of Alcalá, Alcalá de Henares, Madrid, Spain 2 Entomology Department, Aranzadi Science Society, Donostia - San Sebastián, Gipuzkoa, Spain Corresponding author: Enrique Ledesma ([email protected]); Alberto Jiménez-Valverde ([email protected]) Academic editor: P. Michalik | Received 22 January 2019 | Accepted 5 March 2019 | Published 23 April 2019 http://zoobank.org/52EA570E-CA40-453D-A921-7785A9BD188B Citation: Ledesma E, Jiménez-Valverde A, de Castro A, Aguado-Aranda P, Ortuño VM (2019) The study of hidden habitats sheds light on poorly known taxa: spiders of the Mesovoid Shallow Substratum. ZooKeys 841: 39–59. https:// doi.org/10.3897/zookeys.841.33271 Abstract The scarce and biased knowledge about the diversity and distribution of Araneae species in the Iberian Peninsula is accentuated in poorly known habitats such as the Mesovoid Shallow Substratum (MSS). The aim of this study was to characterize the spiders inventory of the colluvial MSS of the Sierra de Guadar- rama National Park, and to assess the importance of this habitat for the conservation of the taxon. Thirty-three localities were selected across the high peaks of the Guadarrama mountain range and they were sampled for a year using subterranean traps specially designed to capture arthropods in the MSS. -
Arm-Less Mitochondrial Trnas Conserved for Over 30 Millions of Years in Spiders Joan Pons1* , Pere Bover2, Leticia Bidegaray-Batista3 and Miquel A
Pons et al. BMC Genomics (2019) 20:665 https://doi.org/10.1186/s12864-019-6026-1 RESEARCHARTICLE Open Access Arm-less mitochondrial tRNAs conserved for over 30 millions of years in spiders Joan Pons1* , Pere Bover2, Leticia Bidegaray-Batista3 and Miquel A. Arnedo4 Abstract Background: In recent years, Next Generation Sequencing (NGS) has accelerated the generation of full mitogenomes, providing abundant material for studying different aspects of molecular evolution. Some mitogenomes have been observed to harbor atypical sequences with bizarre secondary structures, which origins and significance could only be fully understood in an evolutionary framework. Results: Here we report and analyze the mitochondrial sequences and gene arrangements of six closely related spiders in the sister genera Parachtes and Harpactocrates, which belong to the nocturnal, ground dwelling family Dysderidae. Species of both genera have compacted mitogenomes with many overlapping genes and strikingly reduced tRNAs that are among the shortest described within metazoans. Thanks to the conservation of the gene order and the nucleotide identity across close relatives, we were able to predict the secondary structures even on arm-less tRNAs, which would be otherwise unattainable for a single species. They exhibit aberrant secondary structures with the lack of either DHU or TΨC arms and many miss-pairings in the acceptor arm but this degeneracy trend goes even further since at least four tRNAs are arm-less in the six spider species studied. Conclusions: The conservation of at least four arm-less tRNA genes in two sister spider genera for about 30 myr suggest that these genes are still encoding fully functional tRNAs though they may be post-transcriptionally edited to be fully functional as previously described in other species. -
Pholcid Spider Molecular Systematics Revisited, with New Insights Into the Biogeography and the Evolution of the Group
Cladistics Cladistics 29 (2013) 132–146 10.1111/j.1096-0031.2012.00419.x Pholcid spider molecular systematics revisited, with new insights into the biogeography and the evolution of the group Dimitar Dimitrova,b,*, Jonas J. Astrinc and Bernhard A. Huberc aCenter for Macroecology, Evolution and Climate, Zoological Museum, University of Copenhagen, Copenhagen, Denmark; bDepartment of Biological Sciences, The George Washington University, Washington, DC, USA; cForschungsmuseum Alexander Koenig, Adenauerallee 160, D-53113 Bonn, Germany Accepted 5 June 2012 Abstract We analysed seven genetic markers sampled from 165 pholcids and 34 outgroups in order to test and improve the recently revised classification of the family. Our results are based on the largest and most comprehensive set of molecular data so far to study pholcid relationships. The data were analysed using parsimony, maximum-likelihood and Bayesian methods for phylogenetic reconstruc- tion. We show that in several previously problematic cases molecular and morphological data are converging towards a single hypothesis. This is also the first study that explicitly addresses the age of pholcid diversification and intends to shed light on the factors that have shaped species diversity and distributions. Results from relaxed uncorrelated lognormal clock analyses suggest that the family is much older than revealed by the fossil record alone. The first pholcids appeared and diversified in the early Mesozoic about 207 Ma ago (185–228 Ma) before the breakup of the supercontinent Pangea. Vicariance events coupled with niche conservatism seem to have played an important role in setting distributional patterns of pholcids. Finally, our data provide further support for multiple convergent shifts in microhabitat preferences in several pholcid lineages. -
Spider World Records: a Resource for Using Organismal Biology As a Hook for Science Learning
A peer-reviewed version of this preprint was published in PeerJ on 31 October 2017. View the peer-reviewed version (peerj.com/articles/3972), which is the preferred citable publication unless you specifically need to cite this preprint. Mammola S, Michalik P, Hebets EA, Isaia M. 2017. Record breaking achievements by spiders and the scientists who study them. PeerJ 5:e3972 https://doi.org/10.7717/peerj.3972 Spider World Records: a resource for using organismal biology as a hook for science learning Stefano Mammola Corresp., 1, 2 , Peter Michalik 3 , Eileen A Hebets 4, 5 , Marco Isaia Corresp. 2, 6 1 Department of Life Sciences and Systems Biology, University of Turin, Italy 2 IUCN SSC Spider & Scorpion Specialist Group, Torino, Italy 3 Zoologisches Institut und Museum, Ernst-Moritz-Arndt Universität Greifswald, Greifswald, Germany 4 Division of Invertebrate Zoology, American Museum of Natural History, New York, USA 5 School of Biological Sciences, University of Nebraska - Lincoln, Lincoln, United States 6 Department of Life Sciences and Systems Biology, University of Turin, Torino, Italy Corresponding Authors: Stefano Mammola, Marco Isaia Email address: [email protected], [email protected] The public reputation of spiders is that they are deadly poisonous, brown and nondescript, and hairy and ugly. There are tales describing how they lay eggs in human skin, frequent toilet seats in airports, and crawl into your mouth when you are sleeping. Misinformation about spiders in the popular media and on the World Wide Web is rampant, leading to distorted perceptions and negative feelings about spiders. Despite these negative feelings, however, spiders offer intrigue and mystery and can be used to effectively engage even arachnophobic individuals. -
Rdna Phylogeny of the Family Oonopidae (Araneae) 177-192 72 (2): 177 – 192 25.7.2014
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Arthropod Systematics and Phylogeny Jahr/Year: 2014 Band/Volume: 72 Autor(en)/Author(s): DeBusschere Charlotte, Fannes Wouter, Henrard Arnaud, Gaublomme Eva, Jocque Rudy, Baert Leon Artikel/Article: Unravelling the goblin spiders puzzle: rDNA phylogeny of the family Oonopidae (Araneae) 177-192 72 (2): 177 – 192 25.7.2014 © Senckenberg Gesellschaft für Naturforschung, 2014. Unravelling the goblin spiders puzzle: rDNA phylogeny of the family Oonopidae (Araneae) Charlotte de Busschere *, 1 , Wouter Fannes 2, Arnaud Henrard 2, 3, Eva Gaublomme 1, Rudy Jocqué 2 & Léon Baert 1 1 O.D. Taxonomy and Phylogeny, Royal Belgian Institute of Natural Sciences, Brussels, Belgium; Charlotte de Busschere* [Charlotte. [email protected]], Eva Gaublomme [[email protected]], Léon Baert [[email protected]] — 2 Section In ver tebrates noninsects, Royal Museum for Central Africa, Tervuren, Belgium; Wouter Fannes [[email protected]], Arnaud Henrard [[email protected]], Rudy Jocqué [[email protected]] — 3 Earth and Life Institute, Biodiversity research Center, Université Catholique de Louvain, Louvain la Neuve, Belgium — * Corresponding author Accepted 20.v.2014. Published online at www.senckenberg.de/arthropodsystematics on 18.vii.2014. Abstract The mega-diverse haplogyne family of goblin spiders (Oonopidae Simon, 1890) has long been among the most poorly known families of spiders. However, since the launch of the goblin spider Planetary Biodiversity Inventory project knowledge about Oonopidae is rapidly expanding. Currently, Oonopidae is placed within the superfamily Dysderoidea and is divided into three subfamilies. Nevertheless, the monophyly and internal phylogeny of this family has not yet been investigated based on DNA sequence data. -
Identifying Spiders Through DNA Barcodes
481 Identifying spiders through DNA barcodes Rowan D.H. Barrett and Paul D.N. Hebert Abstract: With almost 40 000 species, the spiders provide important model systems for studies of sociality, mating systems, and sexual dimorphism. However, work on this group is regularly constrained by difficulties in species identi- fication. DNA-based identification systems represent a promising approach to resolve this taxonomic impediment, but their efficacy has only been tested in a few groups. In this study, we demonstrate that sequence diversity in a standard segment of the mitochondrial gene coding for cytochrome c oxidase I (COI) is highly effective in discriminating spider species. A COI profile containing 168 spider species and 35 other arachnid species correctly assigned 100% of subse- quently analyzed specimens to the appropriate species. In addition, we found no overlap between mean nucleotide di- vergences at the intra- and inter-specific levels. Our results establish the potential of COI as a rapid and accurate identification tool for biodiversity surveys of spiders. Résumé : Avec presque 40 000 espèces, les araignées constituent un modèle important pour l’étude de la vie sociale, des systèmes d’accouplement et du dimorphisme sexuel. Cependant, la recherche sur ce groupe est souvent restreinte par les problèmes d’identification des espèces. Les systèmes d’identification basés dur l’ADN présentent une solution prometteuse à cette difficulté d’ordre taxonomique, mais leur efficacité n’a été vérifiée que chez quelques groupes. Nous démontrons ici que la diversité des séquences dans un segment type du gène mitochondrial de la cytochrome c oxydase I (COI) peut servir de façon très efficace à la reconnaissance des espèces d’araignées. -
Downloaded from the NCBI Matches in the Acceptor Arm
Pons et al. BMC Genomics (2019) 20:665 https://doi.org/10.1186/s12864-019-6026-1 RESEARCHARTICLE Open Access Arm-less mitochondrial tRNAs conserved for over 30 millions of years in spiders Joan Pons1* , Pere Bover2, Leticia Bidegaray-Batista3 and Miquel A. Arnedo4 Abstract Background: In recent years, Next Generation Sequencing (NGS) has accelerated the generation of full mitogenomes, providing abundant material for studying different aspects of molecular evolution. Some mitogenomes have been observed to harbor atypical sequences with bizarre secondary structures, which origins and significance could only be fully understood in an evolutionary framework. Results: Here we report and analyze the mitochondrial sequences and gene arrangements of six closely related spiders in the sister genera Parachtes and Harpactocrates, which belong to the nocturnal, ground dwelling family Dysderidae. Species of both genera have compacted mitogenomes with many overlapping genes and strikingly reduced tRNAs that are among the shortest described within metazoans. Thanks to the conservation of the gene order and the nucleotide identity across close relatives, we were able to predict the secondary structures even on arm-less tRNAs, which would be otherwise unattainable for a single species. They exhibit aberrant secondary structures with the lack of either DHU or TΨC arms and many miss-pairings in the acceptor arm but this degeneracy trend goes even further since at least four tRNAs are arm-less in the six spider species studied. Conclusions: The conservation of at least four arm-less tRNA genes in two sister spider genera for about 30 myr suggest that these genes are still encoding fully functional tRNAs though they may be post-transcriptionally edited to be fully functional as previously described in other species. -
Abstract Book
ABSTRACT BOOK Canterbury, New Zealand 10–15 February 2019 21st International Congress of Arachnology ORGANISING COMMITTEE MAIN ORGANISERS Cor Vink Peter Michalik Curator of Natural History Curator of the Zoological Museum Canterbury Museum University of Greifswald Rolleston Avenue, Christchurch Loitzer Str 26, Greifswald New Zealand Germany LOCAL ORGANISING COMMITTEE Ximena Nelson (University of Canterbury) Adrian Paterson (Lincoln University) Simon Pollard (University of Canterbury) Phil Sirvid (Museum of New Zealand, Te Papa Tongarewa) Victoria Smith (Canterbury Museum) SCIENTIFIC COMMITTEE Anita Aisenberg (IICBE, Uruguay) Miquel Arnedo (University of Barcelona, Spain) Mark Harvey (Western Australian Museum, Australia) Mariella Herberstein (Macquarie University, Australia) Greg Holwell (University of Auckland, New Zealand) Marco Isaia (University of Torino, Italy) Lizzy Lowe (Macquarie University, Australia) Anne Wignall (Massey University, New Zealand) Jonas Wolff (Macquarie University, Australia) 21st International Congress of Arachnology 1 INVITED SPEAKERS Plenary talk, day 1 Sensory systems, learning, and communication – insights from amblypygids to humans Eileen Hebets University of Nebraska-Lincoln, Nebraska, USA E-mail: [email protected] Arachnids encompass tremendous diversity with respect to their morphologies, their sensory systems, their lifestyles, their habitats, their mating rituals, and their interactions with both conspecifics and heterospecifics. As such, this group of often-enigmatic arthropods offers unlimited and sometimes unparalleled opportunities to address fundamental questions in ecology, evolution, physiology, neurobiology, and behaviour (among others). Amblypygids (Order Amblypygi), for example, possess distinctly elongated walking legs covered with sensory hairs capable of detecting both airborne and substrate-borne chemical stimuli, as well as mechanoreceptive information. Simultaneously, they display an extraordinary central nervous system with distinctly large and convoluted higher order processing centres called mushroom bodies. -
Phylogenomics and Biogeography of Leptonetid Spiders (Araneae : Leptonetidae)
CSIRO PUBLISHING Invertebrate Systematics, 2021, 35, 332–349 https://doi.org/10.1071/IS20065 Phylogenomics and biogeography of leptonetid spiders (Araneae : Leptonetidae) Joel Ledford A,G, Shahan Derkarabetian B, Carles Ribera C, James Starrett D, Jason E. Bond D, Charles Griswold E and Marshal HedinF ADepartment of Plant Biology, University of California—Davis, Davis, CA 95616-5270, USA. BDepartment of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA. CDepartament de Biologia Evolutiva, Ecologia i Ciències Ambientals, Universitat de Barcelona, Barcelona, Spain. DDepartment of Entomology and Nematology, University of California—Davis, Davis, CA 95616-5270, USA. EDepartment of Entomology, California Academy of Sciences, San Francisco, CA 94118, USA. FDepartment of Biology, San Diego State University, San Diego, CA 92182-4614, USA. GCorresponding author. Email: [email protected] Abstract. Leptonetidae are rarely encountered spiders, usually associated with caves and mesic habitats, and are disjunctly distributed across the Holarctic. Data from ultraconserved elements (UCEs) were used in concatenated and coalescent-based analyses to estimate the phylogenetic history of the family. Our taxon sample included close outgroups, and 90% of described leptonetid genera, with denser sampling in North America and Mediterranean Europe. Two data matrices were assembled and analysed; the first ‘relaxed’ matrix includes the maximum number of loci and the second ‘strict’ matrix is limited to the same set of core orthologs but with flanking introns mostly removed. A molecular dating analysis incorporating fossil and geological calibration points was used to estimate divergence times, and dispersal–extinction–cladogenesis analysis (DEC) was used to infer ancestral distributions. Analysis of both data matrices using maximum likelihood and coalescent-based methods supports the monophyly of Archoleptonetinae and Leptonetinae. -
Speci C Morphological Characters in the Spider Dysdera Erythrina
Biosemiotics and The Identication of Species- Specic Morphological Characters in The Spider Dysdera Erythrina (Araneae: Dysderidae) Joachim Schult ( [email protected] ) Universität Hamburg Onno A. Preik Universität Hamburg Stefan Kirschner Universität Hamburg Frank Friedrich Universität Hamburg Research Article Keywords: Dysdera erythrina, spiders, Biosemiotics, specic-mate recognition Posted Date: August 19th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-787977/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/17 Abstract A biosemiotic approach of interpreting morphological data is apt to reveal morphological traits whose key role in intraspecic communication processes, such as specic mate recognition, has been overlooked so far. Certain genital structures of the haplogyne spider Dysdera erythrina (Walckenaer, 1802) serve as an example. In Dysdera erythrina the semi-circular sclerite at the tip of the male’s bulb ts exactly into the anterior diverticulum of the female’s endogyne. From the viewpoint of biosemiotics, which studies the production and interpretation of signs and codes in living systems, these structures are considered the morphological zones of an intraspecic communication process which forms one of the necessary prerequisites for sperm transfer and achievement of fertilisation. Thus, a biosemiotics-based species delimitation approach with its peculiar form of evaluation of morphological structures yields new insights for the multidisciplinary undertaking of modern integrative taxonomy. Introduction Biosemiotics studies the production and interpretation of signs and codes in living systems [1] [2]. The modern biosemiotic species concept [2], largely based on Paterson’s recognition concept of species [3] [4] [5] [6] [7] [8], lays the focus on those characters, often morphological ones, which serve as signals or signs essential for recognising an appropriate mating partner and achieving fertilisation. -
The Spider Tree of Life: Phylogeny of Araneae Based on Target‐Gene
Cladistics Cladistics 33 (2017) 574–616 10.1111/cla.12182 The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling Ward C. Wheelera,*, Jonathan A. Coddingtonb, Louise M. Crowleya, Dimitar Dimitrovc,d, Pablo A. Goloboffe, Charles E. Griswoldf, Gustavo Hormigad, Lorenzo Prendinia, Martın J. Ramırezg, Petra Sierwaldh, Lina Almeida-Silvaf,i, Fernando Alvarez-Padillaf,d,j, Miquel A. Arnedok, Ligia R. Benavides Silvad, Suresh P. Benjamind,l, Jason E. Bondm, Cristian J. Grismadog, Emile Hasand, Marshal Hedinn, Matıas A. Izquierdog, Facundo M. Labarquef,g,i, Joel Ledfordf,o, Lara Lopardod, Wayne P. Maddisonp, Jeremy A. Millerf,q, Luis N. Piacentinig, Norman I. Platnicka, Daniele Polotowf,i, Diana Silva-Davila f,r, Nikolaj Scharffs, Tamas Szuts} f,t, Darrell Ubickf, Cor J. Vinkn,u, Hannah M. Woodf,b and Junxia Zhangp aDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA; bSmithsonian Institution, National Museum of Natural History, 10th and Constitution, NW Washington, DC 20560-0105, USA; cNatural History Museum, University of Oslo, Oslo, Norway; dDepartment of Biological Sciences, The George Washington University, 2029 G St., NW Washington, DC 20052, USA; eUnidad Ejecutora Lillo, FML—CONICET, Miguel Lillo 251, 4000, SM. de Tucuman, Argentina; fDepartment of Entomology, California Academy of Sciences, 55 Music Concourse Drive, Golden State Park, San Francisco, CA 94118, USA; gMuseo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’—CONICET, Av. Angel Gallardo 470, C1405DJR, Buenos Aires, Argentina; hThe Field Museum of Natural History, 1400 S Lake Shore Drive, Chicago, IL 60605, USA; iLaboratorio Especial de Colecßoes~ Zoologicas, Instituto Butantan, Av.