1 References Cited in the U.S. Fish and Wildlife Service American Eel
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Evolution of Parasitism in Nematoda
SUPPLEMENT ARTICLE S26 The evolution of parasitism in Nematoda MARK BLAXTER* and GEORGIOS KOUTSOVOULOS Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh EH9 3JT, UK (Received 19 February 2014; revised 16 April 2014; accepted 16 April 2014; first published online 25 June 2014) SUMMARY Nematodes are abundant and diverse, and include many parasitic species. Molecular phylogenetic analyses have shown that parasitism of plants and animals has arisen at least 15 times independently. Extant nematode species also display lifestyles that are proposed to be on the evolutionary trajectory to parasitism. Recent advances have permitted the determination of the genomes and transcriptomes of many nematode species. These new data can be used to further resolve the phylogeny of Nematoda, and identify possible genetic patterns associated with parasitism. Plant-parasitic nematode genomes show evidence of horizontal gene transfer from other members of the rhizosphere, and these genes play important roles in the parasite-host interface. Similar horizontal transfer is not evident in animal parasitic groups. Many nematodes have bacterial symbionts that can be essential for survival. Horizontal transfer from symbionts to the nematode is also common, but its biological importance is unclear. Over 100 nematode species are currently targeted for sequencing, and these data will yield important insights into the biology and evolutionary history of parasitism. It is important that these new technologies are also applied to free-living taxa, so that the pre-parasitic ground state can be inferred, and the novelties associated with parasitism isolated. Key words: Nematoda, nematodes, parasitism, evolution, genome, symbiont, Wolbachia, phylogeny, horizontal gene transfer. THE DIVERSITY OF THE NEMATODA medical and veterinary science. -
The Transcriptome of the Invasive Eel Swimbladder Nematode Parasite
Heitlinger et al. BMC Genomics 2013, 14:87 http://www.biomedcentral.com/1471-2164/14/87 RESEARCH ARTICLE Open Access The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus Emanuel Heitlinger1,2,4*, Stephen Bridgett3, Anna Montazam3, Horst Taraschewski1 and Mark Blaxter2,3 Abstract Background: Anguillicola crassus is an economically and ecologically important parasitic nematode of eels. The native range of A. crassus is in East Asia, where it infects Anguilla japonica, the Japanese eel. A. crassus was introduced into European eels, Anguilla anguilla, 30 years ago. The parasite is more pathogenic in its new host than in its native one, and is thought to threaten the endangered An. anguilla across its range. The molecular bases for the increased pathogenicity of the nematodes in their new hosts is not known. Results: A reference transcriptome was assembled for A. crassus from Roche 454 pyrosequencing data. Raw reads (756,363 total) from nematodes from An. japonica and An. anguilla hosts were filtered for likely host contaminants and ribosomal RNAs. The remaining 353,055 reads were assembled into 11,372 contigs of a high confidence assembly (spanning 6.6 Mb) and an additional 21,153 singletons and contigs of a lower confidence assembly (spanning an additional 6.2 Mb). Roughly 55% of the high confidence assembly contigs were annotated with domain- or protein sequence similarity derived functional information. Sequences conserved only in nematodes, or unique to A. crassus were more likely to have secretory signal peptides. Thousands of high quality single nucleotide polymorphisms were identified, and coding polymorphism was correlated with differential expression between individual nematodes. -
The Phylogenetics of Anguillicolidae (Nematoda: Anguillicolidea), Swimbladder Parasites of Eels
UC Davis UC Davis Previously Published Works Title The phylogenetics of Anguillicolidae (Nematoda: Anguillicolidea), swimbladder parasites of eels Permalink https://escholarship.org/uc/item/3017p5m4 Journal BMC Evolutionary Biology, 12(1) ISSN 1471-2148 Authors Laetsch, Dominik R Heitlinger, Emanuel G Taraschewski, Horst et al. Publication Date 2012-05-04 DOI http://dx.doi.org/10.1186/1471-2148-12-60 Peer reviewed eScholarship.org Powered by the California Digital Library University of California The phylogenetics of Anguillicolidae (Nematoda: Anguillicoloidea), swimbladder parasites of eels Laetsch et al. Laetsch et al. BMC Evolutionary Biology 2012, 12:60 http://www.biomedcentral.com/1471-2148/12/60 Laetsch et al. BMC Evolutionary Biology 2012, 12:60 http://www.biomedcentral.com/1471-2148/12/60 RESEARCH ARTICLE Open Access The phylogenetics of Anguillicolidae (Nematoda: Anguillicoloidea), swimbladder parasites of eels Dominik R Laetsch1,2*, Emanuel G Heitlinger1,2, Horst Taraschewski1, Steven A Nadler3 and Mark L Blaxter2 Abstract Background: Anguillicolidae Yamaguti, 1935 is a family of parasitic nematode infecting fresh-water eels of the genus Anguilla, comprising five species in the genera Anguillicola and Anguillicoloides. Anguillicoloides crassus is of particular importance, as it has recently spread from its endemic range in the Eastern Pacific to Europe and North America, where it poses a significant threat to new, naïve hosts such as the economic important eel species Anguilla anguilla and Anguilla rostrata. The Anguillicolidae are therefore all potentially invasive taxa, but the relationships of the described species remain unclear. Anguillicolidae is part of Spirurina, a diverse clade made up of only animal parasites, but placement of the family within Spirurina is based on limited data. -
American Eel Biological Species Report
AMERICAN EEL BIOLOGICAL SPECIES REPORT Supplement to: Endangered and Threatened Wildlife and Plants; 12-Month Petition Finding for the American Eel (Anguilla rostrata) Docket Number FWS-HQ-ES-2015-0143 U.S. Fish and Wildlife Service, Region 5 June 2015 This page blank for two-sided printing ii U.S. Fish and Wildlife Service, Northeast Region AMERICAN EEL BIOLOGICAL SPECIES REPORT Steven L. Shepard U.S. Fish and Wildlife Service, Maine Field Office 17 Godfrey Drive, Suite 2 Orono, Maine 04473-3702 [email protected] For copies of this report, contact: U.S. Fish and Wildlife Service Hadley, MA 01035 http://www.fws.gov/northeast/newsroom/eels.html http://www.regulations.gov This American Eel Biological Species Report has been prepared by the U.S. Fish and Wildlife Service (Service) in support of a Status Review pursuant to the Endangered Species Act, 16 U.S.C. §§ 1531, et seq. This report reviews the best available information, including published literature, reports, unpublished data, and expert opinions. The report addresses current American eel issues in contemporary time frames. The report is not intended to provide definitive statements on the subjects addressed, but rather as a review of the best available information and ongoing investigations. The report includes updates to, and relevant material from, the Service’s 2007 American Eel Status Review. The report was published in January 2015 following peer review. The report was revised to correct typographical and minor factual errors and reissued in June 2015. With thanks to Krishna Gifford, Martin Miller, James McCleave, Alex Haro, Tom Kwak, David Richardson, Andy Dolloff, Kate Taylor, Wilson Laney, Sheila Eyler, Mark Cantrell, Rosemarie Gnam, Caitlin Snyder, AJ Vale, Steve Minkkinen, Matt Schwarz, Sarah LaPorte, Angela Erves, Heather Bell, the ASMFC American Eel Technical Committee, and the USFWS American Eel Working Group. -
NEAT (North East Atlantic Taxa): Scandinavian Marine Nematoda E
1 E. microstomus Dujardin,1845 NEAT (North East Atlantic Taxa): * Sp. inq. Scandinavian marine Nematoda Check-List Engl. Channel compiled at TMBL (Tjärnö Marine Biological Laboratory) by: E. oculatus (Ørsted,1844) Hans G. Hansson 1989-06-07 / small revisions until yuletide 1994, when it for the first time was published on Internet. = Anguillula oculata Ørsted,1844 Reformatted to a pdf file March,1996 and again published August 1998. * Sp. inq. Öresund Email address of compiler: [email protected] E. paralittoralis Wieser,1953 Postal address: Tjärnölaboratoriet, S-452 96 Strömstad, Sweden S Britain, Chile Citation suggested: Hansson, H.G. (Comp.), NEAT (North East Atlantic Taxa): Scandinavian marine Nematoda E. quadridentatus Berlin,1853 Check-List. Internet pdf Ed., Aug. 1998. [http://www.tmbl.gu.se]. = Enoplostoma hirtum Marion,1870 (™ of Enoplostoma Marion,1870 - Mediterranean) Scotland, S Britain, Mediterranean, Black Sea Denotations: (™) = "Genotype" @ = Association * = General note E. schulzi Gerlach,1952 = Ruamowhitia orae Yeatee,1967 N.B.: This is one of several preliminary check-lists, covering S. Scandinavian marine animal (and partly marine = Ruamowhitia halopila Guirado,1975 protoctist) taxa. Some financial support from (or via) NKMB (Nordiskt Kollegium för Marin Biologi), during the last Kieler Bucht, S Britain, Biscay, Mediterranean years of the existence of this organisation (until 1993), is thankfully acknowledged. The primary purpose of these E. serratus Ditlevsen,1926 checklists is to facilitate for everyone, trying to identify organisms from the area, to know which species that earlier Iceland have been encountered there, or in neighbouring areas. A secondary purpose is to facilitate for non-experts to find as correct names as possible for organisms, including names of authors and years of description. -
Guide to the Parasites of Fishes of Canada Part V: Nematoda
Wilfrid Laurier University Scholars Commons @ Laurier Biology Faculty Publications Biology 2016 ZOOTAXA: Guide to the Parasites of Fishes of Canada Part V: Nematoda Hisao P. Arai Pacific Biological Station John W. Smith Wilfrid Laurier University Follow this and additional works at: https://scholars.wlu.ca/biol_faculty Part of the Biology Commons, and the Marine Biology Commons Recommended Citation Arai, Hisao P., and John W. Smith. Zootaxa: Guide to the Parasites of Fishes of Canada Part V: Nematoda. Magnolia Press, 2016. This Book is brought to you for free and open access by the Biology at Scholars Commons @ Laurier. It has been accepted for inclusion in Biology Faculty Publications by an authorized administrator of Scholars Commons @ Laurier. For more information, please contact [email protected]. Zootaxa 4185 (1): 001–274 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Monograph ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4185.1.1 http://zoobank.org/urn:lsid:zoobank.org:pub:0D054EDD-9CDC-4D16-A8B2-F1EBBDAD6E09 ZOOTAXA 4185 Guide to the Parasites of Fishes of Canada Part V: Nematoda HISAO P. ARAI3, 5 & JOHN W. SMITH4 3Pacific Biological Station, Nanaimo, British Columbia V9R 5K6 4Department of Biology, Wilfrid Laurier University, Waterloo, Ontario N2L 3C5. E-mail: [email protected] 5Deceased Magnolia Press Auckland, New Zealand Accepted by K. DAVIES (Initially edited by M.D.B. BURT & D.F. McALPINE): 5 Apr. 2016; published: 8 Nov. 2016 Licensed under a Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0 HISAO P. ARAI & JOHN W. -
Ahead of Print Online Version Phylogenetic Relationships of Some
Ahead of print online version FOLIA PARASITOLOGICA 58[2]: 135–148, 2011 © Institute of Parasitology, Biology Centre ASCR ISSN 0015-5683 (print), ISSN 1803-6465 (online) http://www.paru.cas.cz/folia/ Phylogenetic relationships of some spirurine nematodes (Nematoda: Chromadorea: Rhabditida: Spirurina) parasitic in fishes inferred from SSU rRNA gene sequences Eva Černotíková1,2, Aleš Horák1 and František Moravec1 1 Institute of Parasitology, Biology Centre of the Academy of Sciences of the Czech Republic, Branišovská 31, 370 05 České Budějovice, Czech Republic; 2 Faculty of Science, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic Abstract: Small subunit rRNA sequences were obtained from 38 representatives mainly of the nematode orders Spirurida (Camalla- nidae, Cystidicolidae, Daniconematidae, Philometridae, Physalopteridae, Rhabdochonidae, Skrjabillanidae) and, in part, Ascaridida (Anisakidae, Cucullanidae, Quimperiidae). The examined nematodes are predominantly parasites of fishes. Their analyses provided well-supported trees allowing the study of phylogenetic relationships among some spirurine nematodes. The present results support the placement of Cucullanidae at the base of the suborder Spirurina and, based on the position of the genus Philonema (subfamily Philoneminae) forming a sister group to Skrjabillanidae (thus Philoneminae should be elevated to Philonemidae), the paraphyly of the Philometridae. Comparison of a large number of sequences of representatives of the latter family supports the paraphyly of the genera Philometra, Philometroides and Dentiphilometra. The validity of the newly included genera Afrophilometra and Carangi- nema is not supported. These results indicate geographical isolation has not been the cause of speciation in this parasite group and no coevolution with fish hosts is apparent. On the contrary, the group of South-American species ofAlinema , Nilonema and Rumai is placed in an independent branch, thus markedly separated from other family members. -
Some Aspects of the Taxonomy and Biology of Dracunculoid Nematodes Parasitic in Fishes: a Review
FOLIA PARASITOLOGICA 51: 1–13, 2004 REVIEW ARTICLE Some aspects of the taxonomy and biology of dracunculoid nematodes parasitic in fishes: a review František Moravec Institute of Parasitology, Academy of Sciences of the Czech Republic, Branišovská 31, 370 05 České Budějovice, Czech Republic Key words: Nematoda, Dracunculoidea, parasites, taxonomy, fish Abstract. The nematode superfamily Dracunculoidea includes 166 recognized species, of which 150 (90%) are parasitic in about 300 species of freshwater, brackish-water and marine fishes. Fish dracunculoids are placed in 31 genera (86% of all dracunculoid genera) belonging to eight of the nine dracunculoid families: Anguillicolidae, Daniconematidae, Guyanemidae, Lucionematidae, Micropleuridae, Philometridae, Skrjabillanidae, and Tetanonematidae; the genus Lockenloia is considered incertae sedis. Because of difficulties in studying fish dracunculoids, associated with their morphological and biological peculiarities, most species of these largely histozoic parasites are poorly known and males of the majority of species and of eight genera have not yet been discovered. It is apparent that the present classification system of dracunculoids as a whole does not reflect phylogenetic relationships and a taxonomic revision of this nematode group, based on detailed morphological (including SEM and TEM), life history and molecular studies of individual species, is quite necessary. Data on the biology of fish dracunculoids is scarce. In known cases, their life cycles involve copepods, ostracods or branchiurids as intermediate hosts and, sometimes, fish paratenic hosts are known to occur in dracunculoid species parasitizing as adults piscivorous definitive hosts. However, nothing is known about the life cycles of representatives of 20 genera. Some species of dracunculoids, particularly of philometrids, are highly pathogenic and are known as agents of serious fish diseases. -
Práticas Autárquicas Face Às Espécies Exóticas Invasoras Em Portugal
Os contornos da invasão: práticas autárquicas face às espécies exóticas invasoras em Portugal Sofia Cristina da Silva Oliveira Mestrado em Ecologia, Ambiente e Território Departamento de Biologia 2016 Orientador Paulo Talhadas dos Santos, Professor Auxiliar, Faculdade de Ciências da Universidade do Porto Coorientador Ruth Maria de Oliveira Pereira, Professora Auxiliar Convidada, Faculdade de Ciências da Universidade do Porto Todas as correções determinadas pelo júri, e só essas, foram efetuadas. O Presidente do Júri, Porto, ______/______/_________ FCUP I Os contornos da invasão: práticas autárquicas face às espécies exóticas invasoras em Portugal Agradecimentos Em primeiro lugar, quero agradecer aos meus orientadores – Professor Paulo Santos e Professora Ruth Pereira – por me terem dado a oportunidade de elaborar a minha tese de mest rado sobre duas áreas que tanto me fascina m : as espécies exóticas invasoras e a Educação Ambiental . Agrade ço - vos também todos os ensinamentos, toda a disponibilidade e paciência para esclarecer as minhas dúvidas, e, principalmente, agradeço - vos a liberdade e o apoio que me deram para expandir a minha dissertação de formas que nã o estavam inicialmente previstas . Gostaria de agradecer também ao Professor Nuno Formigo , pelo apoio, por todos os ensinamentos e ainda pela disponibilidade que demonstrou ao longo de todo o meu percurso neste mestrado. Ao Professor João Honrado agradeço imenso a disponibilidade e todo s os conselhos que me transmitiu sobre a monitorização da vegetação. A todos os funcionários municipais e respetivas autarquias, um muito obrigada! Obrigada por terem dedicado parte do vosso tempo para me encaminharem da melhor forma possível por todos os canais necessários. -
Infection Status of Anguillicoloides Crassus in Wild European Eels (Anguilla Anguilla) from Four Rivers of the Northeast Mediterranean Region, Turkey
Infection status of Anguillicoloides crassus in wild European eels (Anguilla anguilla) from Four Rivers of the Northeast Mediterranean Region, Turkey Cafer Erkin KOYUNCU1, Doğukan KAYA2*, Selmin ÖZER1, Mustafa BARIŞ1, Ercument GENÇ2 1Department of Aquaculture (Programme of Fish Disease), Faculty of Fisheries, Mersin University, Yenisehir Kampusu, 33169, Mersin, Turkey. 2Department of Fisheries and Aquaculture Engineering, Faculty of Agriculture, Ankara University, Diskapi, 06110, Ankara, Turkey. *Corresponding author: [email protected] Abstract: In this study the infection status of swimbladder nematode Anguillicoloides crassus in European eel (Anguilla anguilla) was evaluated for the northeast Mediterranean Region of Turkey. 170 fresh European eel samples were obtained from the four different river side fish markets (whilst processing stage) as follows 45 from Goksu River (G), 42 from Seyhan River (S), 42 from Ceyhan River (C), and 41 from Asi River (A) in two times during a period of 3 years. The number of infected eels (Ni), prevalence (P%), parasite abundance (A), and mean intensity (MI) values were calculated according to the sampled period/locations. The prevalence, parasite abundance, and mean intensity values of parasites were higher Asi River than others. Keywords: Wild European eel, Fish market, Anguillicoloides crassus. Introduction evaluate the seasonal status of swimbladder parasite The European eel, Anguilla anguilla Linnaeus 1758, is a infections in European eels. Fish were obtained from fish catadromous species found in all European waters and markets during processing stage located near Göksu including in the southern part of the Mediterranean Sea River, Seyhan River, Ceyhan River and Asi River in (North Africa) (Rad et al., 2013; Jacoby and Gollock, northeast Mediterranean region of Turkey. -
The Evolution of Parasitism in Nematoda
SUPPLEMENT ARTICLE S26 The evolution of parasitism in Nematoda MARK BLAXTER* and GEORGIOS KOUTSOVOULOS Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh EH9 3JT, UK (Received 19 February 2014; revised 16 April 2014; accepted 16 April 2014; first published online 25 June 2014) SUMMARY Nematodes are abundant and diverse, and include many parasitic species. Molecular phylogenetic analyses have shown that parasitism of plants and animals has arisen at least 15 times independently. Extant nematode species also display lifestyles that are proposed to be on the evolutionary trajectory to parasitism. Recent advances have permitted the determination of the genomes and transcriptomes of many nematode species. These new data can be used to further resolve the phylogeny of Nematoda, and identify possible genetic patterns associated with parasitism. Plant-parasitic nematode genomes show evidence of horizontal gene transfer from other members of the rhizosphere, and these genes play important roles in the parasite-host interface. Similar horizontal transfer is not evident in animal parasitic groups. Many nematodes have bacterial symbionts that can be essential for survival. Horizontal transfer from symbionts to the nematode is also common, but its biological importance is unclear. Over 100 nematode species are currently targeted for sequencing, and these data will yield important insights into the biology and evolutionary history of parasitism. It is important that these new technologies are also applied to free-living taxa, so that the pre-parasitic ground state can be inferred, and the novelties associated with parasitism isolated. Key words: Nematoda, nematodes, parasitism, evolution, genome, symbiont, Wolbachia, phylogeny, horizontal gene transfer. THE DIVERSITY OF THE NEMATODA medical and veterinary science. -
Anguillicoloides Crassus: an Invasive Parasitic Nematode Infecting American Eel (Anguilla Rostratd) in Cape Breton, Nova Scotia
Anguillicoloides crassus: an invasive parasitic nematode infecting American eel (Anguilla rostratd) in Cape Breton, Nova Scotia by Cheryl Wall A Thesis Submitted to Saint Mary's University, Halifax, Nova Scotia in Partial Fulfillment of the Requirements for the Degree of Master of Science in Applied Science August 19, 2011, Halifax, Nova Scotia ©Cheryl Wall 2011 Approved: Dr. Katherine Jones Supervisor Approved: Dr. David Cone Supervisor Approved: Dr. Gary Conboy Examiner Approved: Mr. John MacMillan Supervisory Committee Approved: Dr. William Jones Supervisory Committee Approved: Dr. Kevin Vessey Dean of Graduate Studies Approved: Dr. Jeremy Lundholm Program Co-ordinator Date: August 19, 2011 Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington OttawaONK1A0N4 OttawaONK1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-81332-4 Our file Notre reference ISBN: 978-0-494-81332-4 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, preter, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these.