LIST of AQUATIC ALIEN SPECIES of the IBERIAN PENINSULA (2020) Updated List of Aquatic Alien Species Introduced and Established in Iberian Inland Waters
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15 Sea Turtle Epibiosis
15 Sea Turtle Epibiosis Michael G. Frick and joseph B. Pfaller CONTENTS 15. I Introduction .......................................................................................................................... 399 15.2 Common Forms .................................................................................................................... 401 15.2.1 Sessile Forms ............................................................................................................ 401 15.2.2 Sedentary Forms ....................................................................................................... 401 15.2.3 Motile Forms ............................................................................................................ 401 15.3 Communities and Community Dynamics ............................................................................ 402 15.3.1 Pelagic/Oceanic Communities .................................................................................. 402 15.3.2 Benthic/Neritic Communities ................................................................................... 402 15.3.3 Obligate Communities .............................................................................................. 403 15.3.4 Community Distribution ........................................................................................... 403 15.3.5 Community Succession ............................................................................................ 404 15.4 Ecological Interactions ........................................................................................................ -
Bibliography Database of Living/Fossil Sharks, Rays and Chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the Year 2016
www.shark-references.com Version 13.01.2017 Bibliography database of living/fossil sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the year 2016 published by Jürgen Pollerspöck, Benediktinerring 34, 94569 Stephansposching, Germany and Nicolas Straube, Munich, Germany ISSN: 2195-6499 copyright by the authors 1 please inform us about missing papers: [email protected] www.shark-references.com Version 13.01.2017 Abstract: This paper contains a collection of 803 citations (no conference abstracts) on topics related to extant and extinct Chondrichthyes (sharks, rays, and chimaeras) as well as a list of Chondrichthyan species and hosted parasites newly described in 2016. The list is the result of regular queries in numerous journals, books and online publications. It provides a complete list of publication citations as well as a database report containing rearranged subsets of the list sorted by the keyword statistics, extant and extinct genera and species descriptions from the years 2000 to 2016, list of descriptions of extinct and extant species from 2016, parasitology, reproduction, distribution, diet, conservation, and taxonomy. The paper is intended to be consulted for information. In addition, we provide information on the geographic and depth distribution of newly described species, i.e. the type specimens from the year 1990- 2016 in a hot spot analysis. Please note that the content of this paper has been compiled to the best of our abilities based on current knowledge and practice, however, -
On the Distribution of 'Gonionemus Vertens' A
ON THE DISTRIBUTION OF ’GONIONEMUS VERTENS’ A. AGASSIZ (HYDROZOA, LIMNOMEDUSAE), A NEW SPECIES IN THE EELGRASS BEDS OF LAKE GREVELINGEN (S.W. NETHERLANDS) * C. BAKKER (Delta Institute fo r Hydrobiological Research, Yerseke, The Netherlands). INTRODUCTION The ecosystem of Lake Grevelingen, a closed sea arm in the Delta area o f the S.W.-Netherlands is studied by the Delta Institute fo r Hydrobiological Research. Average depth o f the lake (surface area : 108 km2; volume : 575.10^ m^) is small (5.3 m), as extended shallows occur, especially along the north-eastern shore. Since the closure of the original sea arm (1971), the shallow areas were gradually covered by a dense vegetation o f eelgrass (Zostera marina L.) during summer. Fig. 1. shows the distribution and cover percentages of Zostera in the lake during the summer of 1978. The beds serve as a sheltered biotope fo r several animals. The epifauna o f Zostera, notably amphipods and isopods, represent a valuable source o f food fo r small litto ra l pelagic species, such as sticklebacks and atherinid fish. The sheltered habitat is especially important for animals sensitive to strong wind-driven turbulence. From 1976 onwards the medusa o f Gonionemus vertens A. Agassiz is frequently found w ith in the eelgrass beds. The extension o f the Zostera vegetation has evidently created enlarged possibilities for the development o f the medusa (BAKKER , 1978). Several medusae were collected since 1976 during the diving-, dredging- and other sampling activities of collaborators of the Institute. In the course of the summer of 1980 approximately 40 live specimens were transferred into aquaria in the Institute and kept alive fo r months. -
Ahead of Print Online Version Gyrodactylus Aff. Mugili Zhukov
Ahead of print online version FoliA PArAsitologicA 60 [5]: 441–447, 2013 © institute of Parasitology, Biology centre Ascr issN 0015-5683 (print), issN 1803-6465 (online) http://folia.paru.cas.cz/ Gyrodactylus aff. mugili Zhukov, 1970 (Monogenoidea: Gyro- dactylidae) from the gills of mullets (Mugiliformes: Mugilidae) collected from the inland waters of southern Iraq, with an evalutation of previous records of Gyrodactylus spp. on mullets in Iraq Delane C. Kritsky1, Atheer H. Ali2 and Najim R. Khamees2 1 Health Education Program, school of Health Professions, idaho state University, Pocatello, idaho, UsA; 2 Department of Fisheries and Marine resources, college of Agriculture, University of Basrah, Basrah, iraq Abstract: Gyrodactylus aff. mugili Zhukov, 1970 (Monogenoidea: gyrodactylidae) is recorded and described from the gill lamellae of 11 of 35 greenback mullet, Chelon subviridis (Valenciennes) (minimum prevalence 31%), from the brackish waters of the shatt Al-Arab Estuary in southern iraq. the gyrodactylid was also found on the gill lamellae of one of eight speigler’s mullet, Valamugil speigleri (Bleeker), from the brackish waters of the shatt Al-Basrah canal (minimum prevalence 13%). Fifteen Klunzinger’s mullet, Liza klunzingeri (Day), and 13 keeled mullet, Liza carinata (Valenciennes), collected and examined from southern iraqi waters, were apparently uninfected. the gyrodactylids from the greenback mullet and speigler’s mullet were considered to have affinity toG. mu- gili Zhukov, 1970, and along with G. mugili may represent members of a species complex occurring on mullets in the indo-Pacific region. A single damaged gyrodactylid from the external surfaces of the abu mullet, Liza abu (Heckel), was insufficient for species identification. -
Dancing Jelly Sh
Dancing Jellysh Xiaohuan Corina Wang Septemb er Intro duction Jellysh are lovely creatures In the Seattle Aquarium I have seen their soft translucent b o dies dancing elegantly in a darklit tank It was as fascinating as watching a ballet p erformance Designing a jellysh mo del and teaching it how to lo comote are eorts to recreate the jellyshs natural graceful movement Mo deling live creatures and animating their movements have b een long studied Two broad categories of techniques include traditional animation and physicsbased animation Traditional animation uses keyframing where the animator has to repro duce an animals p oses at eachpoint along the time line Although this metho d lets the animators imagination y it is timeconsuming to create the animated sequences and these sequences are usually not reusable Physicsbased animation op ens up a new approach for creating animal motion Applying this technique the animator is able to assign the mo deled creature similar physical structures as those of its live counterpart Moreover the interaction b etween the real creature and its environment is mo deled and simulated Both the internal and external forces that a real animal exp eriences during its motion are applied to its mo del This greatly automate the animation pro cess In short physicsbased animation provides interactive automation to the animated creature instead of manually regenerating the app earance of the animal in sequence as done in the traditional animation Using physicsbased animation to achieve realistic motion the real -
1 References Cited in the U.S. Fish and Wildlife Service American Eel
References Cited1 in the U.S. Fish and Wildlife Service American Eel Biological Species Report and ESA 12-Month Petition Finding Form Docket Number FWS–HQ–ES–2015–0143 August 2015 Aarestrup, K., and coauthors. 2009. Oceanic Spawning Migration of the European eel (Anguilla anguilla). Science 325(5948):1660. Aarestrup, K., and coauthors. 2010. Survival and progression rates of large European silver eel Anguilla anguilla in late freshwater and early marine phases. Aquatic Biology 9(3):263–270. Able, K. W., and M. P. Fahay. 2010. Ecology of Estuarine Fishes, Chapter 17: Anguilla rostrata (Leseur). Pages 139–144. Johns Hopkins University Press. Aieta, A. E., and K. Oliveira. 2009. Distribution, prevalence, and intensity of the swim bladder parasite Anguillicola crassus in New England and eastern Canada. Diseases of Aquatic Organisms 84(3):229–235. Albert, V., B. Jonsson, and L. Bernatchez. 2006. Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time. Molecular Ecology 15(7):1903–1916. Als, T. D., and coauthors. 2011. All roads lead to home: panmixia of European eel in the Sargasso Sea. Molecular Ecology 20(7):1333–1346. Amaral, S. V., F. C. Winchell, B. J. McMahon, and D. A. Dixon. 2003. Evaluation of angled bar racks and louvers for guiding silver phase American eels. Pages 367–376 in D.A. Dixon, editor. Biology, management, and protection of catadromous eels. American Fisheries Society Symposium 33. American Rivers. 2013. 63 dams removed to restore rivers in 2012. Press release, 2013. 87 pages. Aoyama, J. 2003. Origin and evolution of the freshwater eels, genus Anguilla. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
The Evolution of Parasitism in Nematoda
SUPPLEMENT ARTICLE S26 The evolution of parasitism in Nematoda MARK BLAXTER* and GEORGIOS KOUTSOVOULOS Institute of Evolutionary Biology, The University of Edinburgh, Edinburgh EH9 3JT, UK (Received 19 February 2014; revised 16 April 2014; accepted 16 April 2014; first published online 25 June 2014) SUMMARY Nematodes are abundant and diverse, and include many parasitic species. Molecular phylogenetic analyses have shown that parasitism of plants and animals has arisen at least 15 times independently. Extant nematode species also display lifestyles that are proposed to be on the evolutionary trajectory to parasitism. Recent advances have permitted the determination of the genomes and transcriptomes of many nematode species. These new data can be used to further resolve the phylogeny of Nematoda, and identify possible genetic patterns associated with parasitism. Plant-parasitic nematode genomes show evidence of horizontal gene transfer from other members of the rhizosphere, and these genes play important roles in the parasite-host interface. Similar horizontal transfer is not evident in animal parasitic groups. Many nematodes have bacterial symbionts that can be essential for survival. Horizontal transfer from symbionts to the nematode is also common, but its biological importance is unclear. Over 100 nematode species are currently targeted for sequencing, and these data will yield important insights into the biology and evolutionary history of parasitism. It is important that these new technologies are also applied to free-living taxa, so that the pre-parasitic ground state can be inferred, and the novelties associated with parasitism isolated. Key words: Nematoda, nematodes, parasitism, evolution, genome, symbiont, Wolbachia, phylogeny, horizontal gene transfer. THE DIVERSITY OF THE NEMATODA medical and veterinary science. -
The 17Th International Colloquium on Amphipoda
Biodiversity Journal, 2017, 8 (2): 391–394 MONOGRAPH The 17th International Colloquium on Amphipoda Sabrina Lo Brutto1,2,*, Eugenia Schimmenti1 & Davide Iaciofano1 1Dept. STEBICEF, Section of Animal Biology, via Archirafi 18, Palermo, University of Palermo, Italy 2Museum of Zoology “Doderlein”, SIMUA, via Archirafi 16, University of Palermo, Italy *Corresponding author, email: [email protected] th th ABSTRACT The 17 International Colloquium on Amphipoda (17 ICA) has been organized by the University of Palermo (Sicily, Italy), and took place in Trapani, 4-7 September 2017. All the contributions have been published in the present monograph and include a wide range of topics. KEY WORDS International Colloquium on Amphipoda; ICA; Amphipoda. Received 30.04.2017; accepted 31.05.2017; printed 30.06.2017 Proceedings of the 17th International Colloquium on Amphipoda (17th ICA), September 4th-7th 2017, Trapani (Italy) The first International Colloquium on Amphi- Poland, Turkey, Norway, Brazil and Canada within poda was held in Verona in 1969, as a simple meet- the Scientific Committee: ing of specialists interested in the Systematics of Sabrina Lo Brutto (Coordinator) - University of Gammarus and Niphargus. Palermo, Italy Now, after 48 years, the Colloquium reached the Elvira De Matthaeis - University La Sapienza, 17th edition, held at the “Polo Territoriale della Italy Provincia di Trapani”, a site of the University of Felicita Scapini - University of Firenze, Italy Palermo, in Italy; and for the second time in Sicily Alberto Ugolini - University of Firenze, Italy (Lo Brutto et al., 2013). Maria Beatrice Scipione - Stazione Zoologica The Organizing and Scientific Committees were Anton Dohrn, Italy composed by people from different countries. -
Barbatula Leoparda (Actinopterygii, Nemacheilidae), a New Endemic Species of Stone Loach of French Catalonia
Scientific paper Barbatula leoparda (Actinopterygii, Nemacheilidae), a new endemic species of stone loach of French Catalonia by Camille GAULIARD (1), Agnès DETTAI (2), Henri PERSAT (1, 3), Philippe KEITH (1) & Gaël P.J. DENYS* (1, 4) Abstract. – This study described a new stone loach species in France, Barbatula leoparda, which is endemic to French Catalonia (Têt and Tech river drainages). Seven specimens were compared to 49 specimens of B. bar- batula (Linnaeus, 1758) and 71 specimens of B. quignardi (Băcescu-Meşter, 1967). This new species is char- acterized by the presence of blotches on the belly and the jugular area in individuals longer than 47 mm SL and by a greater interorbital distance (35.5 to 41.8% of the head length). We brought moreover the sequence of two mitochondrial markers (COI and 12S, respectively 652 and 950 bp) of the holotype, which are well distinct from all other species, for molecular identifications. This discovery is important for conservation. Résumé. – Barbatula leoparda (Actinopterigii, Nemacheilidae), une nouvelle espèce endémique de loche fran- che en Catalogne française. © SFI Submitted: 4 Jun. 2018 Cette étude décrit une nouvelle espèce de loche franche en France, Barbatula leoparda, qui est endémique Accepted: 23 Jan. 2019 Editor: G. Duhamel à la Catalogne française (bassins de la Têt et du Tech). Sept spécimens ont été comparés à 49 spécimens de B. barbatula (Linnaeus, 1758) et 71 spécimens de B. quignardi (Băcescu-Meşter, 1967). Cette nouvelle espèce est caractérisée par la présence de taches sur le ventre et dans la partie jugulaire pour les individus d’une taille supérieure à 47 mm LS et par une plus grande distance inter-orbitaire (35,5 to 41,8% de la longueur de la tête). -
Invertebrate Animals (Metazoa: Invertebrata) of the Atanasovsko Lake, Bulgaria
Historia naturalis bulgarica, 22: 45-71, 2015 Invertebrate Animals (Metazoa: Invertebrata) of the Atanasovsko Lake, Bulgaria Zdravko Hubenov, Lyubomir Kenderov, Ivan Pandourski Abstract: The role of the Atanasovsko Lake for storage and protection of the specific faunistic diversity, characteristic of the hyper-saline lakes of the Bulgarian seaside is presented. The fauna of the lake and surrounding waters is reviewed, the taxonomic diversity and some zoogeographical and ecological features of the invertebrates are analyzed. The lake system includes from freshwater to hyper-saline basins with fast changing environment. A total of 6 types, 10 classes, 35 orders, 82 families and 157 species are known from the Atanasovsko Lake and the surrounding basins. They include 56 species (35.7%) marine and marine-brackish forms and 101 species (64.3%) brackish-freshwater, freshwater and terrestrial forms, connected with water. For the first time, 23 species in this study are established (12 marine, 1 brackish and 10 freshwater). The marine and marine- brackish species have 4 types of ranges – Cosmopolitan, Atlantic-Indian, Atlantic-Pacific and Atlantic. The Atlantic (66.1%) and Cosmopolitan (23.2%) ranges that include 80% of the species, predominate. Most of the fauna (over 60%) has an Atlantic-Mediterranean origin and represents an impoverished Atlantic-Mediterranean fauna. The freshwater-brackish, freshwater and terrestrial forms, connected with water, that have been established from the Atanasovsko Lake, have 2 main types of ranges – species, distributed in the Palaearctic and beyond it and species, distributed only in the Palaearctic. The representatives of the first type (52.4%) predomi- nate. They are related to the typical marine coastal habitats, optimal for the development of certain species. -
The Transcriptome of the Invasive Eel Swimbladder Nematode Parasite
Heitlinger et al. BMC Genomics 2013, 14:87 http://www.biomedcentral.com/1471-2164/14/87 RESEARCH ARTICLE Open Access The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus Emanuel Heitlinger1,2,4*, Stephen Bridgett3, Anna Montazam3, Horst Taraschewski1 and Mark Blaxter2,3 Abstract Background: Anguillicola crassus is an economically and ecologically important parasitic nematode of eels. The native range of A. crassus is in East Asia, where it infects Anguilla japonica, the Japanese eel. A. crassus was introduced into European eels, Anguilla anguilla, 30 years ago. The parasite is more pathogenic in its new host than in its native one, and is thought to threaten the endangered An. anguilla across its range. The molecular bases for the increased pathogenicity of the nematodes in their new hosts is not known. Results: A reference transcriptome was assembled for A. crassus from Roche 454 pyrosequencing data. Raw reads (756,363 total) from nematodes from An. japonica and An. anguilla hosts were filtered for likely host contaminants and ribosomal RNAs. The remaining 353,055 reads were assembled into 11,372 contigs of a high confidence assembly (spanning 6.6 Mb) and an additional 21,153 singletons and contigs of a lower confidence assembly (spanning an additional 6.2 Mb). Roughly 55% of the high confidence assembly contigs were annotated with domain- or protein sequence similarity derived functional information. Sequences conserved only in nematodes, or unique to A. crassus were more likely to have secretory signal peptides. Thousands of high quality single nucleotide polymorphisms were identified, and coding polymorphism was correlated with differential expression between individual nematodes.