viruses Article A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic Andreas C. Chrysostomou 1, Bram Vrancken 2 , George Koumbaris 3, George Themistokleous 4, Antonia Aristokleous 1, Christina Masia 4, Christina Eleftheriou 5, Costakis Ioannou 4, Dora C. Stylianou 1, Marios Ioannides 3, Panagiotis Petrou 4 , Vasilis Georgiou 1 , Amalia Hatziyianni 4, Philippe Lemey 2, Anne-Mieke Vandamme 2,6 , Philippos P. Patsalis 3,7 and Leondios G. Kostrikis 1,* 1 Department of Biological Sciences, University of Cyprus, Aglantzia, Nicosia 2109, Cyprus;
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[email protected] (P.P.P.) 4 Medical Laboratory of Ammochostos General Hospital, Ammochostos General Hospital, Citation: Chrysostomou, A.C.; Paralimni 5386, Cyprus;
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[email protected] (A.H.) 5 Themistokleous, G.; Aristokleous, A.; Department of Health and Safety, University of Cyprus, Aglantzia, Nicosia 2109, Cyprus;
[email protected] 6 Masia, C.; Eleftheriou, C.; Ioannou, C.; Center for Global Health and Tropical Medicine, Unidade de Microbiologia, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, 1349-008 Lisbon, Portugal Stylianou, D.C.; Ioannides, M.; et al.