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Marc Corrales Berjano
Text in context: Chromatin effects in gene regulation Marc Corrales Berjano TESI DOCTORAL UPF / 2017 DIRECTOR DE LA TESI Dr. Guillaume Filion DEPARTAMENT Gene Regulation, Stem cells and Cancer Genome architecture Center for Genomic Regulation (CRG) ii a mi familia, iii Aknowledgements I want to thank the members of the doctoral board, present and substitutes, for accepting to analize my work and defend my thesis. I also want to thank my thesis commitee Dr. Miguel Beato, Dr. Jordi Garcia-Ojalvo and Dr. Tanya Vavouri for guidance and valuable scientific imput whenever I needed it along these years. I want to thank my mentor Dr. Guillaume Filion, not only for giving me the opportunity to carry this work in a wonderful environement, but for teaching me. No matter the tigh schedule he has allowed me to sit by his side (literally) reviewing a script at the computer, calculating the probaility of plasmid recircularization or deriving a statistical formula at the white board but also helping me to prepare and electroporate a bacterial library in what seemed a contraction of space-time. I want to thank the community of the CRG, always ready to discuss science and life in the corridors, the data seminars, symposiums, the beer sessions or following a mail asking for advice or materials. People at the administration helped enormously to navigate the tortuous bureaucratic world, maximizing the time one can dedicate toscience. ¡Dónde estaría yo sin tu puerta siempre abierta, Imma, madre en funciones de todo phD student! I want to thank the CRG for funding my phD and for constituting what I envisage as the perfect environment to learn to be a scientist. -
2019 Annual Report
BECKMAN CENTER 279 Campus Drive West Stanford, CA 94305 650.723.8423 Stanford University | Beckman Center 2019 Annual Report Annual 2019 | Beckman Center University Stanford beckman.stanford.edu 2019 ANNUAL REPORT ARNOLD AND MABEL BECKMAN CENTER FOR MOLECULAR AND GENETIC MEDICINE 30 Years of Innovation, Discovery, and Leadership in the Life Sciences CREDITS: Cover Design: Neil Murphy, Ghostdog Design Graphic Design: Jack Lem, AlphaGraphics Mountain View Photography: Justin Lewis Beckman Center Director Photo: Christine Baker, Lotus Pod Designs MESSAGE FROM THE DIRECTOR Dear Friends and Trustees, It has been 30 years since the Beckman Center for Molecular and Genetic Medicine at Stanford University School of Medicine opened its doors in 1989. The number of translational scientific discoveries and technological innovations derived from the center’s research labs over the course of the past three decades has been remarkable. Equally remarkable have been the number of scientific awards and honors, including Nobel prizes, received by Beckman faculty and the number of young scientists mentored by Beckman faculty who have gone on to prominent positions in academia, bio-technology and related fields. This year we include several featured articles on these accomplishments. In the field of translational medicine, these discoveries range from the causes of skin, bladder and other cancers, to the identification of human stem cells, from the design of new antifungals and antibiotics to the molecular underpinnings of autism, and from opioids for pain -
GSA Welcomes 2012 Board Members
7INTERs3PRING 4HE'3!2EPORTER winter s spring 2012 New Executive GSA Welcomes 2012 Board Members Director Now on Board The Genetics Society of America New Members of the GSA Board of welcomes four new members elected Directors Adam P. Fagen, by the general membership to the Ph.D., stepped in as 2012 GSA Board of Directors. The VICE PRESIDENT: GSA’s new Executive new members are: Michael Lynch Michael Lynch, Director beginning (Indiana University), who serves as Distinguished December 1, 2011. vice president in 2012 and as GSA Professor of Dr. Fagen previously president in 2013 and Marnie E. Biology, Class of was at the American Halpern (Carnegie Institution for 1954 Professor, Society of Plant Science); Mohamed Noor (Duke Department of Biologists (ASPB), University); and John Schimenti Biology, Indiana where he was the director of public (Cornell University), who will serve as University, continued on page nineteen directors. Bloomington. Dr. Lynch is a population and evolutionary biologist and a In addition to these elected officers, long-time member of GSA. Dr. Lynch 2012 Brenda J. Andrews (University of sees GSA as the home for geneticists Toronto), Editor-in-Chief of GSA’s who study a broad base of topics GSA Award journal, G3: Genes|Genomes|Genetics, and organisms, and as a forum Recipients which was first published online in where general discussion occurs, June 2011, becomes a member of the whether based on the principles Announced Board of Directors. The bylaws have of genetics, the most pressing historically included the GENETICS GSA is pleased to announce the issues within the discipline itself, or editor-in-chief on the Board and as a responses to societal concerns and/ 2012 recipients of its five awards result of a 2011 bylaw revision, the G3 for distinguished service in the or conflicts within applied genetics. -
IST Annual Report 2019
Annual Report 2019 IST Austria administrative and The people of IST Austria technical support staff by nationality Austria 59.4% Nationalities on campus Germany 5.6% Hungary 3.1% Poland 2.5% Romania 2.5% Scientists as well as administrative and technical support staff come Italy 2.1% Russia 1.7% from all over the world to conduct and back research at IST Austria. Czech Republic 1.4% As of December 31, 2019, a total of 72 nationalities were represented India 1.4% Slovakia 1.4% on campus. Spain 1.4% UK 1.4% Other 16.1% North America Europe Asia Canada Albania Italy Afghanistan Cuba Andorra Latvia Bangladesh El Salvador Armenia Lithuania China Mexico Austria Luxembourg South Korea USA Belarus Macedonia India Belgium Malta Iran Bosnia and Netherlands Israel Herzegovina Norway Japan Bulgaria Poland Jordan Croatia Portugal Kazakhstan Cyprus Romania Lebanon Czech Republic Serbia Mongolia Denmark Slovakia Philippines Finland Slovenia Russia France Spain Singapore Georgia Sweden Syria Germany Switzerland Vietnam Greece Turkey Hungary UK Ireland Ukraine Africa Egypt Kenya IST Austria scientists by nationality Libya Austria 14.7% Nigeria Germany 10.9% South America Italy 7.4% Argentina India 5.9% Russia 4.7% Brazil Slovakia 4.1% Chile China 4.1% Colombia Hungary 3.7% Peru Spain 3.3% Uruguay USA 3.1% Czech Republic 2.9% UK 2.4% Oceania Other 32.8% Australia Content 2 HAPPY BIRTHDAY! 40 RESEARCH 4 Foreword by the president 42 Biology 5 Board member voices 44 Computer science 6 “An Austrian miracle” 46 Mathematics A year of celebration 48 Neuroscience -
Chemistry NEWSLETTER
University of Michigan DEPARTMENT OF Chemistry NEWSLETTER Letter from the Chair Greetings from Ann Arbor and the chemical biology. In addition to these that Jim has done. He will be replaced by Department of Chemistry. After one full two outstanding senior hires, we welcome Professor Masato Koreeda. Professor year as Department Chair, I have come to Dr. Larry Beck from Cal Tech as the Dow Mark Meyerhoff will continue as Associ- realize the full scope of this administra- CorningAssistant Professor of analytical ate Chair for Graduate Student Affairs for tive challenge. It’s been a very busy and chemistry in September. Larry brings a another year after which he will take a exciting year as we forge ahead to meet broad spectrum of research expertise in well deserved sabbatical leave. the goals and implement the plans set out solid state NMR, zeolites and We have had another excellent year for in our new 5-year plan. nanostructures. Faculty recruiting will recruiting graduate students. In the fall, One of the most ambitious parts of our continue at a vigorous pace in the coming 45 new Ph.D. students will join the De- plan is the recruitment of new faculty at year with no less than four searches in the partment. This summer has also been a the senior and junior levels. During the area of theoretical physical chemistry, very productive one for undergraduate past year, Professor William Roush organic and chemical biology and inor- research participation with a total of 20 settled in the Department as the first ganic/materials chemistry. -
A Systematic, Label-Free Method for Identifying RNA-Associated Proteins in Vivo Provides Insights Into Vertebrate Ciliary Beatin
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.966754; this version posted March 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 A systematic, label-free method for identifying RNA- associated proteins in vivo provides insights into vertebrate ciliary beating Kevin Drew*, Chanjae Lee*, Rachael M. Cox, Vy Dang, Caitlin C. Devitt, Ophelia Papoulas, Ryan L. Huizar, Edward M. Marcotte** and John B. Wallingford** Dept. of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712 *These authors contributed equally **To whom correspondence should be addressed: John Wallingford Patterson Labs 2401 Speedway Austin, Texas 78712 [email protected] 512-232-2784 Edward Marcotte 2500 Speedway, MBB 3.148BA Austin, Texas 78712 [email protected] 512-471-5435 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.966754; this version posted March 2, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 2 Abstract: Cell-type specific RNA-associated proteins (RAPs) are essential for development and homeostasis in animals. Despite a massive recent effort to systematically identify RAPs, we currently have few comprehensive rosters of cell-type specific RAPs in vertebrate tissues. Here, we demonstrate the feasibility of determining the RNA-interacting proteome of a defined vertebrate embryonic tissue using DIF-FRAC, a systematic and universal (i.e., label-free) method. -
The David H. Koch Institute for Integrative Cancer Research at MIT
The David H. Koch Institute for Integrative Cancer Research at MIT The David H. Koch Institute for Integrative Cancer Research was announced on October 9, 2007. By combining the faculty of the (now former) MIT Center for Cancer Research (CCR) with an equivalent number of distinguished engineers drawn from various MIT departments, the Koch Institute will continue CCR’s tradition of scientific excellence while also seeking to directly promote innovative ways to diagnose, monitor, and treat cancer through advanced technology. Among the engineering faculty there will be remarkable diversity, as the Electrical Engineering and Computer Science, Materials Science and Engineering, Biological Engineering, Chemical Engineering, and Mechanical Engineering departments will be represented in the Koch Institute. For three decades, CCR has been a mainstay of MIT’s—and the nation’s—efforts to conquer cancer. Its faculty has included five Nobel Prize winners, and the wealth of fundamental discoveries that have emerged under its aegis have helped shape the face of molecular biology. Under the banner of the Koch Institute, the future promises to hold even more astounding advances. Within the Koch Institute we will not directly provide clinical care for cancer patients but discoveries made by Koch Institute scientists and engineers will have a broad impact on how the disease is detected and managed. Applying our great strengths in science and technology, and working closely with our clinical collaborators, Koch Institute researchers will be tireless in unraveling the complexities of this disease and bringing new discoveries—and new hope—to patients. The Koch Institute includes more than 40 laboratories and more than 500 researchers located at our headquarters and across the MIT campus. -
Sugar Coated Sugar Has Become Notorious, with Countless Claims of Its Ill Effects on Health
HHMI BULLETIN N OV . ’11 VOL.24 • NO.04 • 4000 Jones Bridge Road Chevy Chase, Maryland 20815-6789 Hughes Medical Institute Howard www.hhmi.org Address Service Requested Sugar Coated Sugar has become notorious, with countless claims of its ill effects on health. But not all sugars are bad for you. Consider fucose, an essential sugar the body needs. Without it, neurons can’t communicate, kidneys can’t filter blood, and skin can’t stay hydrated. Chemical biologist Carolyn • Bertozzi and her group are trying to learn more about the role of fucose in www.hhmi.org development. To do this, they injected modified versions of fucose into live, single-celled zebrafish embryos. As the embryos developed, the altered fucose molecules were incorporated into the sugars that coat cell surfaces. Using a simple chemical reaction, the team attached a labeled probe molecule to the altered fucose so they could visualize its location in the developing embryo. In this image of a 19-hour-old zebrafish embryo, labeled fucose (red) glows in the peripheral cells. Just one of many ways chemistry is helping answer biological questions (see “Living Chemistry,” page 12). YEAR OF CHEMISTRY Chemists fascinated by the complexity of biology are solving problems in neuroscience, immunology, and cell signaling. v ol. 24 / no. no. / Karen Dehnert and Scott Laughlin / Bertozzi lab In This Issue: Traveling Microscope / Lemur vs Mouse / Spotlight on Science Teacher Training 04 ObservatiOns ThE GIvInG TREE The history of science overflows with captivating stories of break- Johann Kraut in 1869 and Hermann Kolbe in 1874, but then, unfortunately, throughs that led to innovative disease treatments. -
William E. Mahoney Annual Lecture in Chemistry
ILLIAM E. MAHONEY OBERT M. MAHONEY Wis a 1955 alumnus of the Department of Chemistry at is President and Chief R the University of Massachusetts, Executive Officer of Belmont Amherst. Professor Mahoney was Savings Bank. Vice Chairman and Chief Operating Mahoney received his M.B.A. Officer, as well as Chairman of the from Columbia Business School Executive Committee of the Board of in 1971. He is a 1970 graduate of Directors, of Witco Corporation (now Chemtura Corporation), a Fortune 500 manufacturer of the University of Massachusetts, specialty chemical and petroleum products. where he earned a Bachelor of Science degree in Chemistry. He received the 1996 After retiring from Witco in 1996, Professor Mahoney diverted Distinguished Alumnus Award from the University of his energies to developing the next generation of leadership Massachusetts, and the 2006 Columbia University in science and industry. Professor Mahoney was a longtime School of Business Leadership Award. He is the recipient adjunct faculty member in the UMass Chemistry Department. of the 2009 Henry L. Shattuck Boston City Champion He taught a highly successful seminar series entitled “The Award and the 2011 USS Constitution Museum’s Charles Business of Science: Contemporary Practices” for several Francis Adams Award for public service. years. Through this seminar series, students were introduced In February 2014, Mahoney was named the “most- to topics in the management of science and technology by speakers from the business management communities. admired CEO of a small or mid-sized company in Professor Mahoney also chaired the Natural Sciences William E. Mahoney Massachusetts” by the Boston Business Journal. -
2019 Annual Report 2019 Annual Report Society for Science & the Public
For more information, please contact: NEW FRONTIERS Bruce Makous Chief Advancement Officer 202-872-5138 | [email protected] www.societyforscience.org | www.sciencenews.org 2019 ANNUAL REPORT 2019 ANNUAL REPORT SOCIETY FOR SCIENCE & THE PUBLIC SCIENCE NEWS | MARCH 2, 2019 To create new elements and study the chemistry of the periodic table’s heaviest atoms, researchers at the Letter from Mary Sue Coleman, Chair 2 GSI Helmholtz Center for Heavy Ion Research in Darmstadt, Germany, Letter from Maya Ajmera, President & CEO 4 use the apparatus shown below to create beams of ions that scientists then smash into other elements. Society Top Moments of 2019 6 GSI HELMHOLTZZENTRUM FÜR SCHWERIONENFORSCHUNG GMBH/JAN Competitions 8 MICHAEL HOSAN 2018 Regeneron Science Talent Search 10 Intel International Science and Engineering Fair 12 Broadcom MASTERS 14 Alumni 16 Science News Media Group 18 Science News 20 SN 10 22 Science News for Students 24 Outreach & Equity 26 Science News in High Schools 28 Advocate Program 30 Research Teachers Conferences 32 STEM Research Grants 34 STEM Action Grants 36 Financials 38 SCIENCE NEWS FOR STUDENTS | JUNE 6, 2019 New ISEF Sponsorship Model 40 ”Grid,” by math artist Henry Segerman, explores mathematical Giving 42 concepts using projections. This 3D-printed sculpture is a patterned Leadership 52 sphere. When light shines through the openings from above, the shadows form a square grid. Executive Team & Staff 55 H. SEGERMAN SCIENCE NEWS | MARCH 30, 2019 Maybe only 30 out of 1,000 icebergs have a green hue, earning them the nickname “jade bergs.” Now scientists may know why the ice has this unusual color. -
MICROBIOLOGY Graduate Program
MICROBIOLOGY Graduate Program Student Handbook 2020-21 THE UNIVERSITY OF TEXAS AT AUSTIN Welcome! .............................................................................................................................................................. 4 Responsibilities of a Microbiology Graduate Student ........................................................................................ 4 The Graduate School ......................................................................................................................................... 4 The College of Natural Sciences (CNS) ............................................................................................................ 5 The Institute for Cell and Molecular Biology (ICMB) ......................................................................................... 5 The Microbiology Graduate Program (MIC) ...................................................................................................... 5 Microbiology Graduate Program Administration ................................................................................................ 6 The Microbiology Graduate Studies Committee (GSC) .................................................................................... 6 Degrees Offered ................................................................................................................................................... 7 Doctor of Philosophy (Ph.D.) ............................................................................................................................ -
SCHEDULE of EVENTS Saturday, April 5 ALL SESSIONS ELIGIBLE for CME CREDIT UNLESS OTHERWISE NOTED.*
09_14AM_SchedEvents_Layout 1 3/11/14 12:29 PM Page 101 SCHEDULE OF EVENTS Saturday, April 5 ALL SESSIONS ELIGIBLE FOR CME CREDIT UNLESS OTHERWISE NOTED.* Saturday, April 5, 2014 Integrative Molecular Epidemiology , Thomas A. Sellers, Chairperson, Room 25, San Diego Convention Center, p. 146 8:00 a.m.-10:00 a.m. Educational Sessions Speakers: Thomas A. Sellers, Lorelei A. Mucci, Simon A. Gayther, Peter Kraft Beyond Ipilimumab and PD1/PD-L1 Pathway Blockade: Next Generation of Immunomodulatory PI3K-mTOR/PTEN , Ramon E. Parsons, Chairperson, Antibodies , Mario Sznol, Chairperson, Room 33, Room 31, San Diego Convention Center, p. 146 San Diego Convention Center, p. 143 Speakers: Lewis C. Cantley, Bart Vanhaesebroeck, John Speakers: Mario Sznol, Ana C. Anderson, Drew M. Blenis, Ramon E. Parsons Pardoll, Andrew D. Weinberg Targeting RhoGTPases and Their Kinase Effectors , Cancer Metabolism , Chi V. Dang, Chairperson, Jonathan Chernoff, Chairperson, Room 1, San Diego Room 6CF, San Diego Convention Center, p. 143 Convention Center, p. 146 Speakers: Chi V. Dang, Joshua D. Rabinowitz, Matthew Speakers: Jonathan Chernoff, Nupam P. Mahajan, G. Vander Heiden, Teresa W. M. Fan Cristina Fernandez-Valle, Michael F. Olson Drugging the Cell Cycle in Cancer , Geoffrey I. Shapiro, Tumor Immunology and Immunotherapy for Non- Chairperson, Room 7, San Diego Convention Center, Immunologists , Michael A. Caligiuri, Chairperson, p. 144 Ballroom 20D, San Diego Convention Center, p. 147 Speakers: Geoffrey I. Shapiro, David D. L. Bowtell, Alan Speakers: Robert A. Baiocchi, Lisa M. Coussens, Jeffrey Eastman, Wenyi Wei A. Sosman, Crystal L. Mackall Evolving Tumor Cell Populations: Dealing with Diversity , Nicholas E. Navin, Chairperson, Room 11, San Diego Convention Center, p.