Appendices Emerging Biotechnologies
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35566 Annreport06 Txt 15-18
02 pp15-18 students.qxp 24/11/06 12:54 Page 1 STUDENTS The student experience has always been characterised by transition, change and development – that’s what higher education is for. But as the landscape of education itself undergoes radical change, Bristol’s enterprising students continue to excel in their chosen fields and branch out into extra-curricular activities with energy and imagination. Postgrads rally to Mongolia Two Bristol postgraduates completed one of the most extreme car challenges in the world – the 8,000-mile Mongol Rally – in an old Volkswagen Polo. Dan Bailey (Department of Mathematics) and George Chapman (Department of Physics) covered a quarter of the Earth’s surface in a car with a one-litre Right: Key members of the Bristol/Havana engine, driving on roads ranging from bad to team.Top, l-r: Robert almost non-existent, with no support vehicles Cottrell, Hayley Sharp and obstacles including two deserts and five Jose Ernesto Gonzalez Hugo Baker. Bottom, mountain ranges. l-r: Ian Baggs, Alejandro Perez The Mongol Rally raises funds for two Malagon. Inset: Machinery inside a charities: ‘Send a Cow’, which provides poor pump house. farmers in Africa with livestock, training and advice; and ‘Save the Children in Mongolia’. Engineers without Borders Competitors’ cars must have an engine no bigger than 1,000cc. After completing the Four Bristol students flew out to Havana in rally in 27 days, Dan and George arrived in July in a bid to improve the Cuban capital’s Ulaan Bataar, where they donated their car to water supplies. The Engineers Without Save the Children in Mongolia. -
Metabolic Footprinting and Systems Biology: the Medium Is the Message
Nature Reviews Microbiology | AOP, published online 10 June 2005; doi:10.1038/nrmicro1177 REVIEWS METABOLIC FOOTPRINTING AND SYSTEMS BIOLOGY: THE MEDIUM IS THE MESSAGE Douglas B. Kell*, Marie Brown*, Hazel M. Davey‡, Warwick B. Dunn*, Irena Spasic* and Stephen G. Oliver§ Abstract | One element of classical systems analysis treats a system as a black or grey box, the inner structure and behaviour of which can be analysed and modelled by varying an internal or external condition, probing it from outside and studying the effect of the variation on the external observables. The result is an understanding of the inner make-up and workings of the system. The equivalent of this in biology is to observe what a cell or system excretes under controlled conditions — the ‘metabolic footprint’ or exometabolome — as this is readily and accurately measurable. Here, we review the principles, experimental approaches and scientific outcomes that have been obtained with this useful and convenient strategy. The METABOLOME is defined as the quantitative comple- either the transcriptome or proteome. This is because ment of low-molecular-weight metabolites present in the activities of metabolic pathways are reflected a cell under a given set of physiological conditions1–9. more accurately in the concentrations of pools of It lends itself readily to functional genomic and other metabolites than in the concentrations of the relevant analyses, as changes in a cell’s physiology as a result of enzymes (or indeed the concentrations of the mRNAs gene deletion or overexpression are amplified through encoding them). the hierarchy of the TRANSCRIPTOME and the PROTEOME, Metabolomics is therefore considered to be, in *School of Chemistry, and are therefore more easily measurable through the many senses, more ‘useful’ (that is, ‘discriminatory’) University of Manchester, metabolome, even when changes in metabolic fluxes than transcriptomics and proteomics, for the following Faraday Building, are negligible1,10–12. -
INAUGURAL SCN MEETING 24 – 25 March 2009
INAUGURAL SCN MEETING 24 – 25 March 2009 Coombe Lodge, Bristol Dear Network Member, First of all, welcome to Coombe Lodge, and welcome to the Inaugural Meeting of the Synthetic Components Network (SCN). The SCN is one of seven Reseach Council-funded Networks in Synthetic Biology. Synthetic biology is one of the BBSRC’s ten new research priorities and is signposted at EPSRC. The Research Council’s aims in setting up the Networks include: to engender a culture of taking a synthetic-biology approach in biological sciences and engineering in the UK; to grow a UK community in synthetic biology; and to help define* what is new and emerging research area, with many interested parties from a broad collection of disciplines. *Though, like many, we feel that keeping this definition as loose and broad as possible may be the best and healthiest option. As stated in our original proposal for the SCN, in broad terms its scientific aim is ‘…to address the challenge of creating new biological and biomimetic systems by combining de novo designed molecular components, pared-down biological moieties and engineering-design principles to build self-organising, functional biomolecular systems’. Now that we are gathered together for the first time, some of the things that we should address are: is this aim appropriate and tractable, and can we better-define what we would like to achieve through the Network? In considering this, however, in some respects this a discussion exercise because we do not have funds for research as such, though we hope sincerely that major grant applications will emerge from it. -
Models of Biological Regulation
Models of Biological Regulation by Moritz Emanuel Beber A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Bioinformatics Approved Dissertation Committee: Prof. Dr. Marc-Thorsten Hütt (chair), Jacobs University Bremen Prof. Dr. Georgi Muskhelishvili, Jacobs University Bremen Prof. Dr.-Ing. Katja Windt, Jacobs University Bremen Prof. Dr. Stefan Bornholdt (external), Universität Bremen Date of Defense: April 17, 2015 Department of Life Sciences & Chemistry iii Statutory Declaration I, Moritz Emanuel Beber, hereby declare, under penalty of perjury, that I am aware of the consequences of a deliberately or negligently wrongly submitted affidavit, in particular the punitive provisions of § 156 and § 161 of the Criminal Code (up to 1 year imprisonment or a fine at delivering a negligent or 3 years or a fine at a knowingly false affidavit). Furthermore I declare that I have written this PhD thesis independently, unless where clearly stated otherwise. I have used only the sources, the data and the support that I have clearly mentioned. This PhD thesis has not been submitted for the conferral of a degree elsewhere. Bremen, July 11, 2017 .................................................................................. Moritz Beber iv Preface The following people deserve my sincerest thanks, more so than I can express in words. There are others whom I do not mention here but also deserve my thanks, please know that you are appreciated nonetheless. First and foremost, I thank my family for showing me, time and again, their unconditional love. Without you I simply would not be here! In particular, I thank my mother Katinka and father Thomas for being calm and analytical when I needed them to but otherwise placing their complete trust in me to go my own way. -
BBSRC Support for Industrial Biotechnology and Bioenergy
BBSRC support for Industrial Biotechnology and Bioenergy Dr Colin Miles What is UK Research and Innovation (UKRI) ? • UKRI is the new funding organisation for research and innovation in the UK. • UK Research and Innovation launched in April 2018. • UKRI comprises seven UK research councils, Innovate UK and a new organisation, Research England, working closely with its partners in the devolved administrations UKRI Strategic Prospectus : Objectives UKRI objectives: − Pushing the frontiers of human knowledge − Delivering economic impact and prosperity − Creating social and cultural impact − Providing the best foundation and environment for research and innovation − Delivering and being accountable as an outstanding organisation What does BBSRC do ? Invests in world- Invests in class bioscience bioscience training research in UK & skills for the next Universities & generation of Institutes bioscientists Drives the widest possible social & Promotes public economic impact dialogue on from our bioscience bioscience BBSRC Forward Look for UK Bioscience Advancing the frontiers of bioscience discovery Understanding Transformative the rules of life technologies Tackling strategic challenges Bioscience for Bioscience for Bioscience for renewable an integrated sustainable resources and understanding agriculture and food clean growth of health Building strong foundations Collaboration, People Infrastructure partnerships and talent and KE BBSRC Vision and Strategy: IBBE (2013-16) VISION: UK bioscience research delivering new products and processes for -
8Th Conference AM.Pdf
Measuring the interplay between uptake and loss processes of xenobiotics 13th June 2019 Maddalena Bronzato Physical Chemistry Chemical Technologies & Operations Group Chemical Research, Jealott’s Hill Understanding losses from a foliar surface Volatilisation 2 Why is pesticide volatility so important? ● Environmental fate (loss and persistence) ● Registrability ● Activity (vapour activity and volatility as a benefit) Vapour activity on Aphids Powdery mildew on Fruit Environmental fate 3 Understanding losses from a foliar surface Volatilisation Photodegradation 4 Why is pesticide photodegradation important? ● Activity (photodegradation is one of most destructive post-application pathways) ● Environmental fate (product and persistence) ● Marketability ● Registrability Pesticide sprayed on leaf surface 5 In lab test for volatility and photodegradation Photodegradation Suntest Volatilisation Wind Tunnel 6 Testing for photodegradation - Suntest ● Atlas XLS+ Suntest ● UV-filtered xenon lamp ● Mimics sunlight intensity & spectrum ● Irradiance set to 750W/m2 ● Thermostated baseplate (circulating water @ 15ºC → baseplate ≈ 20 ± 3ºC) 7 Test for volatility- The Wind Tunnel ● Very sample-efficient means of estimating vapour pressure (typically <100µg)] ● Studies are normally run at 40C with a standard wind speed of 1m/s (no control of the R.H.) 8 Photodegradation and volatility test – glass as substrate Pros: ● Good proxy for foliar surface ● Uniform, clean substrate to use for the tests ● High-throughput test ● Worst case scenario ● Indicative but imperfect Limitations: ● Different polarity and morphology between glass and leaves–> differences in redistribution mechanism and deposit shape? 9 SEM images of leaf and glass surfaces Glass 10 Surface redistribution mechanisms Volatilisation Photodegradation Vapour Phase Redistribution 11 Different deposit – effect on photodegradation and volatility Crystalline Amorphous A highly crystalline deposit The larger the deposit area, the faster the compound volatilises. -
The 7Th Alpbach Workshop On: COILED-COIL, FIBROUS
The 7The 7th Ath Alpbach Workshop on: lpbach Workshop on: COILEDCOILED--COILCOIL, , FIBROUS FIBROUS & & REPEAT REPEAT COILED-COIL, FIBROUS & REPEAT PROTEINSPROTEINS At The Romantikhotel BöglerhofAt The Romantikhotel Böglerhof, Alpbach, Austria, Alpbach, Austria, Alpbach, Austria Sunday Sunday 3rd 3rd September– Friday September– Friday 8th 8th September September 20172017 7th Alpbach Workshop on: Coiled-coil, fibrous and repeat proteins SUNDAY SEPTEMBER 3 Arrivals, Reception and Dinner MONDAY SEPTEMBER 4 09:00 – 10:40 New developments in coiled coils (Andrei Lupas) Andrei Lupas (MPI Tübingen) - Coiled coils - between structure and unstructure Partho Ghosh (UC San Diego) - Functional essential instability in the M protein coiled coil Marcus Jahnel (MPI Dresden) - Coiled-coils as molecular motors: multistable polymer engines Jeni Lauer (MPI Dresden) - Structural Dynamics of the Rab5- Modulated Coiled-Coil Protein EEA1 Revealed by Hydrogen- Deuterium Exchange Mass Spectrometry 10:40 – 11:10 Tea break 11:10 – 12:30 Of α-fibers and β-fibers (Andrei Lupas) Birte Hernandez Alvarez (MPI Tübingen) - α/β-coiled coils Antoine Schramm (Marseille) - Characterization of measles virus phosphoprotein: A coiled-coil domain containing conserved motifs that are crucial for its function Michelle Peckham (Leeds) - Stable single α helices that do not form coiled coils - what makes them stable? 12:30 - Lunch Afternoon free 17:00 – 17:50 Flash Presentations for Posters 17:50 – 18:30 Posters 18:30 – 20:00 Dinner 20:00 – 21:40 Coiled coils at the membrane (Alexander -
The Implementation of Open Access Oral and Written Evidence Contents 1994 Group – Written Evidence
SCIENCE AND TECHNOLOGY SELECT COMMITTEE The implementation of open access Oral and Written evidence Contents 1994 Group – Written evidence ............................................................................................................. 5 Academy of Social Sciences – Written evidence ................................................................................. 8 Association for Learning Technology (ALT) – Written evidence ................................................. 13 Association of Learned and Professional Society Publishers (ALPSP) – Written evidence .... 19 Jeffrey Beall, Scholarly Initiatives Librarian, University of Colorado Denver – Written evidence ...................................................................................................................................................... 24 Dr Rick Bradford – Written evidence ................................................................................................ 25 British Academy – Written evidence .................................................................................................. 27 British Heart Foundation (BHF) – Written evidence ...................................................................... 32 British Medical Journal Group (BMJ) – Written evidence .............................................................. 34 British Psychological Society (BPS) – Written evidence ................................................................. 38 British Sociological Association (BSA) – Written evidence........................................................... -
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Journal of Artificial Intelligence Research 32 (2008) 825{877 Submitted 06/07; published 08/08 Qualitative System Identification from Imperfect Data George M. Coghill [email protected] School of Natural and Computing Sciences University of Aberdeen, Aberdeen, AB24 3UE. UK. Ashwin Srinivasan [email protected] IBM India Research Laboratory 4, Block C, Institutional Area Vasant Kunj Phase II, New Delhi 110070, India. and Department of CSE and Centre for Health Informatics University of New South Wales, Kensington Sydney, Australia. Ross D. King [email protected] Deptartment of Computer Science University of Wales, Aberystwyth, SY23 3DB. UK. Abstract Experience in the physical sciences suggests that the only realistic means of under- standing complex systems is through the use of mathematical models. Typically, this has come to mean the identification of quantitative models expressed as differential equations. Quantitative modelling works best when the structure of the model (i.e., the form of the equations) is known; and the primary concern is one of estimating the values of the param- eters in the model. For complex biological systems, the model-structure is rarely known and the modeler has to deal with both model-identification and parameter-estimation. In this paper we are concerned with providing automated assistance to the first of these prob- lems. Specifically, we examine the identification by machine of the structural relationships between experimentally observed variables. These relationship will be expressed in the form of qualitative abstractions of a quantitative model. Such qualitative models may not only provide clues to the precise quantitative model, but also assist in understand- ing the essence of that model. -
Rebecca Darley, Daniel Reynolds and Chris Wickham Open Access Journals in Humanities and Social Science a British Academy Research Project
OPEN ACCESS JOURNALS IN HUMANITIES AND SOCIAL SCIENCE Rebecca Darley, Daniel Reynolds and Chris Wickham Open access journals in Humanities and Social Science A British Academy Research Project Rebecca Darley, Daniel Reynolds and Chris Wickham The British Academy 2014 THE BRITISH ACADEMY 10–11 Carlton House Terrace London SW1Y 5AH Website: www.britac.ac.uk Registered Charity, No. 233176 © 2014 the contributors This text is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. ISBN 978-0-85672-614-9 Contents Open access journals in Humanities and Social Science: summary 4 1. Introduction and context 10 2. UK Humanities and Social Science journal publishing and its international face 24 3. The open access policies of journals outside the UK 36 4. Journal half-lives and their implications 49 5. The viability of journals in an open-access context 67 6. Who should pay for publishing? 78 7. Conclusions 88 Appendix A 95 Appendix B 100 Appendix C 103 4 Open access journals in Humanities and Social Science Open access journals in Humanities and Social Science: summary Open access journals in Humanities and Social Science, published 2014 by the British Academy Open access journals in Humanities and Social Science: summary 5 Introduction • This British Academy research project on the effects of current UK open access policies was funded by the Higher Education Funding Council for England (HEFCE) and was overseen by a Steering Committee set up by the Academy to manage the project. The project was led by Professor Chris Wickham, FBA (British Academy Vice-President, Publications), with support and co-writing from Dr Rebecca Darley and Dr Daniel Reynolds. -
Annual Review 2014.Qxp Layout 1 15/01/2015 12:10 Page 1
M1251 Annual Review 2014.qxp_Layout 1 15/01/2015 12:10 Page 1 AnnuAl Review 2013/14 M1251 Annual Review 2014.qxp_Layout 1 15/01/2015 12:10 Page 2 Review of the yeAR is was a year in which we took significant steps towards achieving some of our strategic goals. At the same time, we were able to identify those areas where we need to do more work to meet our very ambitious targets. Contents News 2 Feature 6 Research 8 Culture and community 10 People 12 Facts and figures 16 Professor Dame Nancy Rothwell NEWS FEATURE RESEARCH Alan Gilbert Learning Commons Global challenges, Graphene paints a 2 scoops Guardian University Award 6 Manchester solutions 8 corrosion-free future M1251 Annual Review 2014.qxp_Layout 1 15/01/2015 12:10 Page 1 Annual Review 2013/14 01 It was very pleasing that we generated an therefore, that the number of students in positive initiative to help local unemployed people to operating surplus for the year of £45 million. graduate destinations has increased. prepare for and return to work, either with the Generating an operating surplus is crucial for the University or with local employers, has been huge. University in order to invest in our priority activities. There remains work to do to reach our targeted We made 773 appointments, putting us ahead of position in the upper quartile of NSS results of the our two-year target with a year still to go and In terms of the research agenda, 2013/14 was Russell Group. I was delighted that one of our bringing the number of new appointments since dominated by preparing our submission for the largest investments in the student experience, the programme’s launch to 1,931. -
Scholarly Open Access
10/4/13 LIST OF PUBLISHERS | Scholarly Open Access Scholarly Open Access Critical analysis of scholarly open-access publishing LIST OF PUBLISHERS Beall’s List: Potential, possible, or probable predatory scholarly open- access publishers This is a list of questionable, scholarly open-access publishers. We recommend that scholars read the available reviews, assessments and descriptions provided here, and then decide for themselves whether they want to submit articles, serve as editors or on editorial boards. The criteria for determining predatory publishers are here (http://wp.me/p280Ch-g5). We hope that tenure and promotion committees can also decide for themselves how importantly or not to rate articles published in these journals in the context of their own institutional standards and/or geocultural locus. We emphasize that journal publishers and journals change in their business and editorial practices over time. This list is kept up-to-date to the best extent possible but may not reflect sudden, unreported, or unknown enhancements. o Abhinav (http://www.abhinavjournal.com/index.aspx) o A M Publishers (http://ampublisher.com/index.html) o Academe Research Journals (http://www.academeresearchjournals.org) o Academia Publishing (http://academiapublishing.org/index.htm) o Academic and Business Research Institute (http://www.aabri.com/) o Academic and Scientific Publishing (http://acascipub.com/) o Academic Journals (http://www.academicjournals.org/) o Academic Journals and Research ACJAR (http://www.acjar.org/index.html) o Academic Journals,