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Keep Garfagnina Alive. an Integrated Study on Patterns of Homozygosity, Genomic
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.16.044644; this version posted April 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic 2 inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed. 3 4 5 Christos Dadousis1,*, Francesca Cecchi2, Michela Ablondi1, Maria Chiara Fabbri3, 6 Alessandra Stella4,5, Riccardo Bozzi3 7 8 9 1 Dipartimento di Scienze Medico‐Veterinarie, Università di Parma, Parma, Italy. 10 2 Dipartimento di Scienze Veterinarie, Università di Pisa, Italy. 11 3 Dipartimento di Scienze e Tecnologie Agrarie, Alimentari, Ambientali e Forestali, 12 Università di Firenze, Firenze, 50144, Italy. 13 4 Istituto di Biologia e Biotecnologia Agraria, Consiglio Nazionale delle Ricerche, 14 Milano, Italy. 15 5 Fondazione Parco Tecnologico Padano, Lodi, Italy. 16 17 18 * Corresponding author: 19 Email: [email protected] (CD) 20 ORCID ID: https://orcid.org/0000-0002-7689-6443 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.16.044644; this version posted April 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Abstract 2 The objective of this study was to investigate the genomic background of the 3 Garfagnina (GRF) goat breed that faces the risk of extinction. -
Produzione E Qualità Del Latte in Capre Autoctone Allevate Estensivamente Nella Regione Molise J
Casamassima_imp 25-09-2009 10:26 Pagina 165 D. Casamassima et al. Large Animal Review 2009; 15: 165-174 165 Produzione e qualità del latte in capre autoctone allevate estensivamente nella regione Molise j D. CASAMASSIMA, M. PALAZZO, T. PRESUTTI, R. PIZZO Department of Animal, Vegetal and Environmental Sciences, University of Molise, Italy RIASSUNTO La ricerca ha riguardato la valutazione quanti-qualitativa di latte, con particolare riferimento alla composizione acidica e ad al- cune molecole ad attività bionutrizionale, la lattoferrina (LF) ed il contenuto in isomeri coniugati dell’acido linoleico (CLA), nel latte di due popolazioni autoctone molisane a forte rischio di estinzione, la capra di Montefalcone e la capra Valfortorina. La sperimentazione, della durata di 7 mesi, è stata condotta su 60 capre in lattazione appartenenti ai due tipi genetici caprini, ed ha riguardato la determinazione, ad intervalli mensili, della produzione e qualità del latte, della composizione acidica, del contenuto in CLA (cis9, trans11 e trans10, cis12) e della lattoferrina. La produzione del latte, nell’intera prova, è stata di 275,6 kg e 258,3 kg per la capra di Montefalcone e Valfortorina rispettivamente. La qualità del latte, relativamente ad alcuni suoi com- ponenti, si è attestata su valori di 4,46 e 3,97% per il contenuto in grassi e su valori del 3,64 e 3,59% per il contenuto in pro- teine rispettivamente nei due gruppi etnici. Nel corso della prova, i PUFA ed i MUFA sono aumentati statisticamente (P<0,001), in entrambi i tipi genetici, mentre gli SFA sono diminuiti (P<0,001). -
The Climatic and Genetic Heritage of Italian Goat Breeds with Genomic
www.nature.com/scientificreports OPEN The climatic and genetic heritage of Italian goat breeds with genomic SNP data Matteo Cortellari 1,16, Mario Barbato2,16, Andrea Talenti1,3*, Arianna Bionda1, Antonello Carta4, Roberta Ciampolini5, Elena Ciani6, Alessandra Crisà7, Stefano Frattini1, Emiliano Lasagna8, Donata Marletta9, Salvatore Mastrangelo10, Alessio Negro1, Ettore Randi11, Francesca M. Sarti8, Stefano Sartore12, Dominga Soglia12, Luigi Liotta13, Alessandra Stella14, Paolo Ajmone‑Marsan2, Fabio Pilla15, Licia Colli2 & Paola Crepaldi1 Local adaptation of animals to the environment can abruptly become a burden when faced with rapid climatic changes such as those foreseen for the Italian peninsula over the next 70 years. Our study investigates the genetic structure of the Italian goat populations and links it with the environment and how genetics might evolve over the next 50 years. We used one of the largest national datasets including > 1000 goats from 33 populations across the Italian peninsula collected by the Italian Goat Consortium and genotyped with over 50 k markers. Our results showed that Italian goats can be discriminated in three groups refective of the Italian geography and its geo‑political situation preceding the country unifcation around two centuries ago. We leveraged the remarkable genetic and geographical diversity of the Italian goat populations and performed landscape genomics analysis to disentangle the relationship between genotype and environment, fnding 64 SNPs intercepting genomic regions linked to growth, circadian rhythm, fertility, and infammatory response. Lastly, we calculated the hypothetical future genotypic frequencies of the most relevant SNPs identifed through landscape genomics to evaluate their long‑term efect on the genetic structure of the Italian goat populations. -
Local Adaptations of Mediterranean Sheep and Goats Through an Integrative Approach
Supplemental Information for: Local adaptations of Mediterranean sheep and goats through an integrative approach Bruno Serranito 1,2# , Marco Cavalazzi 3# , Pablo Vidal 4, Dominique Taurisson-Mouret 5, Elena Ciani 6, Marie Bal 3, Eric Rouvellac 3, Bertrand Servin 7, Carole Moreno-Romieux 7, Gwenola Tosser-Klopp 7, Stephen J. G. Hall 8, Johannes A. Lenstra 9, François Pompanon 10 , Badr Benjelloun 10,11 , Anne Da Silva 1* #: Serranito B. and Cavalazzi M. should be considered joint first author * Correspondence: [email protected] Table of Contents: Supplementary Table 1. Initial list breeds for the constitution of the datasets. Page 1 Supplementary Figure 1. Synthetic schema of the main steps for the Page 2 proposed approach. Supplementary Figure 2. Goat and sheep cradles description as a function of Pages 3-4 environmental variables: Synthetic descriptions of cradles and some characteristic breed phenotypic traits. Supplementary Table 2. Description of the breeds included in the sheep and Pages 5 -16 goat datasets. Number of individuals considered, country of origin, information on the breed history, geographical definition of the cradle, description of the breed, use and status. Supplementary Figure 3. LD analyses for sheep and goats. Page 17 Supplementary Text 1. Genetic structure assessment: admixture analyses, Pages 18 -20 sNMF cross-entropies and Mantel tests. Supplementary Figure 4 . Mapping display for sheep and goats, of the Pages 21 -22 geographical cradles and the GPS coordinates of the sampled points; statistical comparisons for the variables Annual Mean Temperature, Annual Mean Precipitation and Altitude between the distributions obtained by the cradle method and the GPS area method, display of the results via boxplots. -
Raising Goats Naturally, 2Nd Edition
AGRICULTURE / SUSTAINABLE LIVING Deborah Niemann PRODUCE YOUR OWN milk, cheese, meat, fiber, fertilizer, and more Deborah Niemann exemplifies the best spirit and action in homestead animal care. What a great contribution to self-reliance. — Joel Salatin, Polyface Farm REVISED SECOND INCORPORATING dairy goats into a diversified homestead can be the key EDITION to greater self-sufficiency. Responding to questions and concerns from readers AND MORE MILK, GUIDE TO MEAT THE COMPLETE RAISING from all over North America and beyond, this fully revised and expanded edition of Raising Goats Naturally will help readers work with nature to raise dairy goats to produce milk, cheese, meat, fertilizer, leather, fiber, and soap — all without relying on drugs or following the factory farm model. REVISED SECOND EDITION By observing your own animals closely and educating yourself about their specific needs, you can create an individualized plan for keeping them healthy and maximizing their productivity. This unique, fully illustrated guide will teach you to help your herd thrive with: Breed-specific descriptions to help you choose the right goats • GOATS for your goals and lifestyle • Detailed information on housing, fencing, breeding, health, milking, and nutrition RAISING • Complete recipes and instructions for making your own cheese, dairy products, and soap, and for cooking with goat meat. Packed with personal experiences and backed up by expert veterinary advice and scientific studies, Raising Goats Naturally brings together a wealth of naturally practical information on raising goats for the love of it and using their milk and GOATS meat to become more self-reliant. Raising Goats Naturally is an easy-to-read, all-encompassing guide to getting started with goats. -
Landwirtschaftliche Genressourcen Der Alpen
Landwirtschaftliche Genressourcen der Alpen 1 Anschrift der Autoren Monitoring Institute for Rare Breeds and Seeds in Europe Schneebergstr. 17, CH-9000 St.Gallen http://www.monitoring-inst.de Koordination und Redaktion Hans-Peter Grünenfelder, St.Gallen Projekt management Nadine Müller, Zurich Plants (A, D, F, SLO) Uenal Bussaglia, St. Gallen Translation Ute Dietrich, Witzenhausen; Silvia Dingwall, Nussbaumen Traductions Monique Dousse, Birmensdorf Traduzioni Renza Prandino, Torino Prevod Borut Stumberger, Cirkulane Umschlag und Illustration Atelier Silvia Ruppen, Vaduz Layout Jacqueline Annen, Maschwanden Zitierung Monitoring Institute for Rare Breeds and Seeds in Europe, 2003: Agricultural Genetic Resources in the Alps, Landwirtschaftliche Genressourcen der Alpen, Ressources génétiques agricoles des Alpes, Risorse genetiche agricole delle Alpi, Kmetijski genetski viri v Alpha. Zürich, Bristol-Stiftung; Bern, Stuttgart, Wien, Haupt. 177 S. + CD-ROM. Bibliografische Information der Deutschen Bibliothek Die Deutsche Bibliothek verzeichnet diese Publikation in der Deutschen Nationalbibliografie; detaillierte bibliografische Daten sind im Internet über <http://dnb.ddb.de> abrufbar. ISBN 3-258-06669-8 Alle Rechte vorbehalten Copyright © 2003 by Haupt Berne Jede Art der Vervielfältigung ohne Genehmigung des Verlages ist unzulässig. Dieses Papier ist umweltverträglich, weil chlorfrei hergestellt. 2 Inhaltsverzeichnis 1. Vorwort 10 2. Synthese 11 2.1. Problemstellung und Auftrag 11 2.2. Pflanzengenetische Ressourcen: Zusammengefasste Ergebnisse nach Ländern 12 2.3. Tiergenetische Ressourcen: Zusammengefasste Ergebnisse nach Ländern 22 2.4. Genereller Handlungsbedarf im Alpenraum 34 3. Einführung 35 3.1. Aktualisierung der Studie ‚Landwirtschaftliche Genressourcen der Alpen’ 35 3.2. Der globale Aktionsplan 38 3.3. EU Projekte und Bestimmungen betreffend landwirtschaftliche Biodiversität 38 3.4. Wichtige internationale Gremien und Datenbanken 42 3.5. -
Animal Genetic Resources Information Bulletin
The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Les appellations employées dans cette publication et la présentation des données qui y figurent n’impliquent de la part de l’Organisation des Nations Unies pour l’alimentation et l’agriculture aucune prise de position quant au statut juridique des pays, territoires, villes ou zones, ou de leurs autorités, ni quant au tracé de leurs frontières ou limites. Las denominaciones empleadas en esta publicación y la forma en que aparecen presentados los datos que contiene no implican de parte de la Organización de las Naciones Unidas para la Agricultura y la Alimentación juicio alguno sobre la condición jurídica de países, territorios, ciudades o zonas, o de sus autoridades, ni respecto de la delimitación de sus fronteras o límites. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the copyright owner. Applications for such permission, with a statement of the purpose and the extent of the reproduction, should be addressed to the Director, Information Division, Food and Agriculture Organization of the United Nations, Viale delle Terme di Caracalla, 00100 Rome, Italy. Tous droits réservés. Aucune partie de cette publication ne peut être reproduite, mise en mémoire dans un système de recherche documentaire ni transmise sous quelque forme ou par quelque procédé que ce soit: électronique, mécanique, par photocopie ou autre, sans autorisation préalable du détenteur des droits d’auteur. -
CATAIR Appendix
CBP and Trade Automated Interface Requirements Appendix: PGA February 12, 2021 Pub # 0875-0419 Contents Table of Changes .................................................................................................................................................... 4 PG01 – Agency Program Codes ........................................................................................................................... 18 PG01 – Government Agency Processing Codes ................................................................................................... 22 PG01 – Electronic Image Submitted Codes.......................................................................................................... 26 PG01 – Globally Unique Product Identification Code Qualifiers ........................................................................ 26 PG01 – Correction Indicators* ............................................................................................................................. 26 PG02 – Product Code Qualifiers........................................................................................................................... 28 PG04 – Units of Measure ...................................................................................................................................... 30 PG05 – Scientific Species Code ........................................................................................................................... 31 PG05 – FWS Wildlife Description Codes ........................................................................................................... -
Post-Genotyping Optimization of Dataset Formation
Pogorevc et al. BMC Genomics (2021) 22:546 https://doi.org/10.1186/s12864-021-07802-z RESEARCH ARTICLE Open Access Post-genotyping optimization of dataset formation could affect genetic diversity parameters: an example of analyses with alpine goat breeds Neža Pogorevc1†, Mojca Simčič1†, Negar Khayatzadeh2, Johann Sölkner2, Beate Berger3, Danijela Bojkovski1, Minja Zorc1, Peter Dovč1, Ivica Medugorac4 and Simon Horvat1* Abstract Background: Local breeds retained unique genetic variability important for adaptive potential especially in light of challenges related to climate change. Our first objective was to perform, for the first time, a genome-wide diversity characterization using Illumina GoatSNP50 BeadChip of autochthonous Drežnica goat breed from Slovenia, and five and one local breeds from neighboring Austria and Italy, respectively. For optimal conservation and breeding programs of endangered local breeds, it is important to detect past admixture events and strive for preservation of purebred representatives of each breed with low or without admixture. In the second objective, we hence investigated the effect of inclusion or exclusion of outliers from datasets on genetic diversity and population structure parameters. Results: Distinct genetic origin of the Drežnica goat was demonstrated as having closest nodes to Austrian and Italian breeds. A phylogenetic study of these breeds with other goat breeds having SNP data available in the DRYA D repository positioned them in the alpine, European and global context. Swiss breeds clustered with cosmopolitan alpine breeds and were closer to French and Spanish breeds. On the other hand, the Drežnica goat, Austrian and Italian breeds were closer to Turkish breeds. Datasets where outliers were excluded affected estimates of genetic diversity parameters within the breed and increased the pairwise genetic distances between most of the breeds. -
Xxiii Congresso Nazionale
S.I.P.A.O.C. Società Italiana di Patologia ed Allevamento degli Ovini e dei Caprini Società Italiana di Patologia ed Allevamento degli Ovini e dei Caprini XXIII CONGRESSO NAZIONALE Centro Congressi Federico II Napoli 12-14 settembre 2018 Istituto Zooprofilattico Sperimentale del Mezzogiorno Università degli Studi di Napoli Federico II EDITORIAL BOARD Aniello Anastasio (UNINA) Francesco Lamagna (UNINA) Luigi Avallane (UNINA) Maria Teresa Manfredi (UNIMI) Stefano Biffani (AIA) Nicola Mirabella (UNINA) Pio Leonardo Mario Bitti (AIA) Giuseppe Moniello (UNISS) Giuseppe Campanile (UNINA) Valeria Maria Morittu (UNICZ) Santo Caracappa (IZSPA) Riccardo Negrini (AIA) Stefania Carpino (ICQRF-MIPAF - Lab Perugia) Gaetano Oliva (UNINA) Biagina Chiofalo (UNIME) Giulio Pagnacco (UNIMI) Vincenzo Chiofalo (UNIME) Ugo Pagnini (UNINA) Salvatore Claps (CREA) Serenella Papparella (UNINA) Natascia Cocchia (UNINA) Laura Rinaldi (UNINA) Paolo De Girolamo (UNINA) Remo Rosati (IZSLTI Giovanni Filippini (IZSUM) Luca Rossi (UNITO) Salvatore Florio (UNINA) Antonio Scala (UNISS) Giovanna Fusco (IZSM) Lucia Sepe (CREA) Annunziata Giangaspero (UNIFG) Massimo Trabalza Marinucci (UNIPG) Giuseppe Iovane (UNINA) Fabrizia Veronesi (UNIPG) 2 4 Società Italiana di Patologia ed Allevamento degli Ovini e dei Caprini XXIII Congresso Nazionale Centro Congressi Federico II Napoli 12-14 settembre 2018 Edited by Antonio Bosco Nadia Musco Maria Paola Maurelli Federico Infascelli Series Editor - Giuseppe Cringoli mappe parassitologiche Serie Editoriale Mappe Parassitologiche Series -
Poročilo Za Leto 2019
Oddelek za zootehniko Jamnikarjeva 101, 1000 Ljubljana PROGRAM VARSTVA BIOTSKE RAZNOVRSTNOSTI V SLOVENSKI ŽIVINOREJI POROČILO ZA LETO 2019 Javna služba nalog genske banke v živinoreji Domžale, februar 2020 1 Poročilo so pripravili: Univerza v Ljubljani Biotehniška fakulteta Oddelek za zootehniko Javna služba nalog genske banke v živinoreji Jamnikarjeva 101, 1000 Ljubljana Po abecednem vrstnem redu: BIRTIČ Dušan mag. BOJKOVSKI Danijela dr. HORVAT Simon LUŠTREK Barbara dr. MALOVRH Špela dr. POTOČNIK Klemen dr. SIMČIČ Mojca dr. TERČIČ Dušan ZAJC Polonca dr. ŽAN Metka dr. ŽGUR Silvester . 2 3 KAZALO VSEBINE 4 SPREMLJANJE STANJA IN KARAKTERIZACIJA PASEM 13 4.1 VODENJE REGISTRA PASEM Z ZOOTEHNIŠKO OCENO 14 4.2 STANJE AVTOHTONIH PASEM DOMAČIH ŽIVALI 16 4.3 PASEMSKI STANDARDI 17 4.4 ŠTUDIJE PASEMSKIH ZNAČILNOSTI 18 4.4.1 Analiza barve dlake in barvnih vzorcev pri drežniški kozi kot dodatno orodje za ohranjanje pasemskih značilnosti in prilagojenosti na visokogorsko okolje 18 4.5 ZBIRANJE BIOLOŠKEGA MATERIALA 23 4.6 GENETSKA KARAKTERIZACIJA 26 4.6.1 Genetska karakterizacija – drežniška koza 26 4.7 DOPOLNJEVANJE PODATKOV O POREKLU PRI DREŽNIŠKI KOZI 36 5 MEHANIZMI TRAJNOSTNE RABE IN RAZVOJA ŽGV 39 5.1 VPLIV REJSKIH PROGRAMOV 40 5.2 TRADICIONALNI PROIZVODNI SISTEMI IN EKOSISTEMSKE STORITVE 41 5.3 IZDELKI AVTOHTONIH PASEM 42 5.4 TRAJNOSTNE PRAKSE RABE AVTOHTONIH PASEM 53 6 OBLIKE OHRANJANJA ŽGV 54 6.1 OHRANJANJE IN SITU IN VIVO 55 6.1.1 Ohranjanje slovenske avtohtone in tradicionalnih pasem kokoši in situ in vivo 59 6.2 OHRANJANJE EX SITU IN VIVO -
Zakonodaja (Zootehnika / Živinoreja) (Andrej Šalika)
REPUBLIKA SLOVENIJA MINISTRSTVO ZA KMETIJSTVO, GOZDARSTVO ININ PREHRANOPREHRANO Zakonodaja (zootehnika / živinoreja) (Andrej Šalika) KIS – Ljubljana, februar 2020 REPUBLIKA SLOVENIJA MINISTRSTVO ZA KMETIJSTVO, GOZDARSTVO ININ PREHRANOPREHRANO Dostop do informacij • Spletna stran EU: • seznam rejskih društev in rejskih podjetij EU • seznam rejskih organov (rejske organizacije) v tretjih državah • evropska zakonodaja • Spletna stran MKGP: • spremembe v lanskem letu • razdelitev vsebin po vrstah živali oziroma panogah • povezave na splet EU in na rejska društva podatki SURS za leto 2010 1 REPUBLIKA SLOVENIJA MINISTRSTVO ZA KMETIJSTVO, GOZDARSTVO ININ PREHRANOPREHRANO Uporaba zakonodaje po 1. nov. 2018 • Uredba o reji živali - URŽ (Uredba EU 2016/1012): • Izvedbena uredba Komisije (EU) 2017/716 – vzor či obrazec za objavo RD in RP • Izvedbena uredba Komisije (EU) 2017/717 – vzor či obrazci za ZS (PŽ in ZM) • Izvedbena uredba Komisije (EU) 2017/1422 – imenovanje referen čnega središ ča (govedo) • Delegirana uredba Komisije (EU) 2017/1940 – vzor či obrazci za ZS (enoprsti kopitarji) • Nekatere direktive in odlo čbe ostajajo (Direktiva 90/425/EEC) – tekmovanje kopitarjev • Uredba o izvajanju uredbe EU o reji živali - nacionalni predpis. • Vse obstoje če PRO in potrjeni RP so bili avtomati čno priznani oziroma potrjeni tudi z URŽ – zdaj potekajo prilagoditve na novo zakonodajo. • Vloga Zakona o živinoreji – ta pri potrjevanju RP in statusa RD in RP nima ve č pomena (razen za čebele): • razveljavili smo 36 pravilnikov • veterinarske vsebine se