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Molecular Phylogenetics and Evolution 123 (2018) 59–72
Molecular Phylogenetics and Evolution 123 (2018) 59–72 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic relationships and cryptic species diversity in the Brazilian egg- T brooding tree frog, genus Fritziana Mello-Leitão 1937 (Anura: Hemiphractidae) ⁎ Marina Walker1, , Mariana L. Lyra1, Célio F.B. Haddad Universidade Estadual Paulista, Instituto de Biociências, Departamento de Zoologia and Centro de Aquicultura (CAUNESP), Campus Rio Claro, Av. 24A,No 1515, Bela Vista, CEP 13506-900 Rio Claro, São Paulo, Brazil ARTICLE INFO ABSTRACT Keywords: The genus Fritziana (Anura: Hemiphractidae) comprises six described species (F. goeldii, F. ohausi, F. fissilis, F. Egg-brooding frogs ulei, F. tonimi, and F. izecksohni) that are endemic to the Brazilian Atlantic Forest. Although the genus has been Molecular phylogeny the subject of studies dealing with its taxonomy, phylogeny, and systematics, there is considerable evidence for Brazilian Atlantic Forest cryptic diversity hidden among the species. The present study aims to understand the genetic diversity and Species diversity phylogenetic relationships among the species of Fritziana, as well as the relationships among populations within New candidate species species. We analyzed 107 individuals throughout the distribution of the genus using three mitochondrial gene Mitochondrial gene rearrangements fragments (12S, 16S, and COI) and two nuclear genes (RAG1 and SLC8A3). Our data indicated that the species diversity in the genus Fritziana is underestimated by the existence of at least three candidate species hidden amongst the group of species with a closed dorsal pouch (i.e. F. fissilis and F. ulei). We also found four species presenting geographical population structures and high genetic diversity, and thus require further investigations. -
Anura: Hemiphractidae: Gastrotheca)
Accepted Manuscript Short communication Brazilian marsupial frogs are diphyletic (Anura: Hemiphractidae: Gastrotheca) David C. Blackburn, William E. Duellman PII: S1055-7903(13)00179-6 DOI: http://dx.doi.org/10.1016/j.ympev.2013.04.021 Reference: YMPEV 4580 To appear in: Molecular Phylogenetics and Evolution Received Date: 7 January 2013 Revised Date: 2 April 2013 Accepted Date: 22 April 2013 Please cite this article as: Blackburn, D.C., Duellman, W.E., Brazilian marsupial frogs are diphyletic (Anura: Hemiphractidae: Gastrotheca), Molecular Phylogenetics and Evolution (2013), doi: http://dx.doi.org/10.1016/ j.ympev.2013.04.021 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 Short Communication 2 3 Brazilian marsupial frogs are diphyletic (Anura: Hemiphractidae: Gastrotheca) 4 5 David C. Blackburna,*, William E. Duellmanb 6 a Department of Vertebrate Zoology & Anthropology, California Academy of Sciences, 55 7 Music Concourse Drive, San Francisco, CA 94118, USA 8 b Biodiversity Institute, University of Kansas, 1345 Jayhawk Boulevard, Lawrence, KS 9 66045, USA 10 * Corresponding author. E-mail address: [email protected] (D.C. Blackburn) 11 12 Abstract 13 Molecular phylogenetic analyses based on expanded taxonomic and geographic sampling 14 support the monophyly of the marsupial frog genera (family Hemiphractidae), resolve six 15 geographically circumscribed lineages within Gastrotheca, and, for the first time, reveal 16 that two divergent lineages of Gastrotheca inhabit the Atlantic Coastal Forests of Brazil. -
Polyploidy and Sex Chromosome Evolution in Amphibians
Chapter 18 Polyploidization and Sex Chromosome Evolution in Amphibians Ben J. Evans, R. Alexander Pyron and John J. Wiens Abstract Genome duplication, including polyploid speciation and spontaneous polyploidy in diploid species, occurs more frequently in amphibians than mammals. One possible explanation is that some amphibians, unlike almost all mammals, have young sex chromosomes that carry a similar suite of genes (apart from the genetic trigger for sex determination). These species potentially can experience genome duplication without disrupting dosage stoichiometry between interacting proteins encoded by genes on the sex chromosomes and autosomalPROOF chromosomes. To explore this possibility, we performed a permutation aimed at testing whether amphibian species that experienced polyploid speciation or spontaneous polyploidy have younger sex chromosomes than other amphibians. While the most conservative permutation was not significant, the frog genera Xenopus and Leiopelma provide anecdotal support for a negative correlation between the age of sex chromosomes and a species’ propensity to undergo genome duplication. This study also points to more frequent turnover of sex chromosomes than previously proposed, and suggests a lack of statistical support for male versus female heterogamy in the most recent common ancestors of frogs, salamanders, and amphibians in general. Future advances in genomics undoubtedly will further illuminate the relationship between amphibian sex chromosome degeneration and genome duplication. B. J. Evans (CORRECTED&) Department of Biology, McMaster University, Life Sciences Building Room 328, 1280 Main Street West, Hamilton, ON L8S 4K1, Canada e-mail: [email protected] R. Alexander Pyron Department of Biological Sciences, The George Washington University, 2023 G St. NW, Washington, DC 20052, USA J. -
Thermal Adaptation of Amphibians in Tropical Mountains
Thermal adaptation of amphibians in tropical mountains. Consequences of global warming Adaptaciones térmicas de anfibios en montañas tropicales: consecuencias del calentamiento global Adaptacions tèrmiques d'amfibis en muntanyes tropicals: conseqüències de l'escalfament global Pol Pintanel Costa ADVERTIMENT. La consulta d’aquesta tesi queda condicionada a l’acceptació de les següents condicions d'ús: La difusió d’aquesta tesi per mitjà del servei TDX (www.tdx.cat) i a través del Dipòsit Digital de la UB (diposit.ub.edu) ha estat autoritzada pels titulars dels drets de propietat intel·lectual únicament per a usos privats emmarcats en activitats d’investigació i docència. No s’autoritza la seva reproducció amb finalitats de lucre ni la seva difusió i posada a disposició des d’un lloc aliè al servei TDX ni al Dipòsit Digital de la UB. No s’autoritza la presentació del seu contingut en una finestra o marc aliè a TDX o al Dipòsit Digital de la UB (framing). Aquesta reserva de drets afecta tant al resum de presentació de la tesi com als seus continguts. En la utilització o cita de parts de la tesi és obligat indicar el nom de la persona autora. ADVERTENCIA. La consulta de esta tesis queda condicionada a la aceptación de las siguientes condiciones de uso: La difusión de esta tesis por medio del servicio TDR (www.tdx.cat) y a través del Repositorio Digital de la UB (diposit.ub.edu) ha sido autorizada por los titulares de los derechos de propiedad intelectual únicamente para usos privados enmarcados en actividades de investigación y docencia. -
New Species of Marsupial Frog (Hemiphractidae
Southern Illinois University Carbondale OpenSIUC Publications Department of Zoology 6-2011 New Species of Marsupial Frog (Hemiphractidae: Gastrotheca) from an Isolated Montane Forest in Southern Peru Alessandro Catenazzi Southern Illinois University Carbondale, [email protected] Rudolf von May Florida International University Follow this and additional works at: http://opensiuc.lib.siu.edu/zool_pubs Copyright 2011 Society for the Study of Amphibians and Reptiles. Published in Journal of Herpetology, Vol. 45 No. 2 (June 2011). Recommended Citation Catenazzi, Alessandro and von May, Rudolf. "New Species of Marsupial Frog (Hemiphractidae: Gastrotheca) from an Isolated Montane Forest in Southern Peru." (Jun 2011). This Article is brought to you for free and open access by the Department of Zoology at OpenSIUC. It has been accepted for inclusion in Publications by an authorized administrator of OpenSIUC. For more information, please contact [email protected]. Journal of Herpetology, Vol. 45, No. 2, pp. 161–166, 2011 Copyright 2011 Society for the Study of Amphibians and Reptiles New Species of Marsupial Frog (Hemiphractidae: Gastrotheca) from an Isolated Montane Forest in Southern Peru 1,2 3 ALESSANDRO CATENAZZI AND RUDOLF vON MAY 1Department of Integrative Biology, University of California at Berkeley, 3060 Valley Life Sciences, Berkeley, California 94720 USA 3Department of Biological Sciences, Florida International University, Miami, Florida 33199 USA ABSTRACT.—We describe a new species of marsupial frog (genus Gastrotheca) from an isolated patch of cloud forest in the upper reaches of the Pachachaca River, a tributary of the Apurı´mac River in southern Peru (Apurı´mac Region). The new species is small with males less than 30 mm and a single female 35.3 mm in snout–vent length. -
Amphibia: Anura)
MUSEU PARAENSE EMÍLIO GOELDI UNIVERSIDADE FEDERAL DO PARÁ PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA CURSO DE DOUTORADO EM ZOOLOGIA ESTUDOS CROMOSSÔMICOS EM ANUROS DAS FAMÍLIAS HYLIDAE RAFINESQUE, 1815 E LEPTODACTYLIDAE WERNER, 1896 (AMPHIBIA: ANURA) PABLO SUÁREZ Tese apresentada ao Programa de Pós-graduação em Zoologia, Curso de Doutorado, do Museu Paraense Emílio Goeldi e Universidade Federal do Pará como requisito para obtenção do grau de doutor em Zoologia. Orientador: Dr. Julio César Pieczarka BELÉM – PARÁ 2010 Livros Grátis http://www.livrosgratis.com.br Milhares de livros grátis para download. II PABLO SUÁREZ ESTUDOS CROMOSSÔMICOS EM ANUROS DAS FAMÍLIAS HYLIDAE RAFINESQUE, 1815 E LEPTODACTYLIDAE WERNER, 1896 (AMPHIBIA: ANURA) Tese apresentada ao Programa de Pós-graduação em Zoologia, Curso de Doutorado, do Museu Paraense Emílio Goeldi e Universidade Federal do Pará como requisito para obtenção do grau de doutor em Zoologia Orientador: Dr. Julio César Pieczarka BELÉM – PARÁ 2010 III PABLO SUÁREZ ESTUDOS CROMOSSÔMICOS EM ANUROS DAS FAMÍLIAS HYLIDAE RAFINESQUE, 1815 E LEPTODACTYLIDAE WERNER, 1896 (AMPHIBIA: ANURA) Banca examinadora Dr. Julio César Pieczarka (Orientador) ICB (Belém) – UFPa Membros Dra. Luciana Bolsoni Lourenço IB/UNICAMP Dr. Odair Aguiar Junior Biociências/UNIFESP Dr. Evonnildo Costa Gonçalves ICB/UFPA Dr. Marinus S. Hoogmoed CZO/MPEG IV DEDICATÓRIA a minha família V AGRADECIMENTOS - Ao Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Museu Paraense Emilio Goeldi (MPEG), Universidade Federal do Pará (UFPa) e à Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) pelo financiamento do Projeto de Pesquisa; - Ao Instituto Brasileiro de Meio Ambiente (IBAMA) por conceder as licenças para a coleta dos animais estudados; - Ao Laboratório de Citogenética Animal pelo fornecimento de toda a infraestrutura acadêmico-científica, sem as quais o trabalho não se realizaria; - À coordenadoria do Curso de Pós-Graduação em Zoologia do Museu Paraense Emilio Goeldi pelo encaminhamento das questões burocrático-acadêmicas; - Ao Dr. -
Systematic Review of the Frog Family Hylidae, with Special Reference to Hylinae: Phylogenetic Analysis and Taxonomic Revision
SYSTEMATIC REVIEW OF THE FROG FAMILY HYLIDAE, WITH SPECIAL REFERENCE TO HYLINAE: PHYLOGENETIC ANALYSIS AND TAXONOMIC REVISION JULIAÂ N FAIVOVICH Division of Vertebrate Zoology (Herpetology), American Museum of Natural History Department of Ecology, Evolution, and Environmental Biology (E3B) Columbia University, New York, NY ([email protected]) CEÂ LIO F.B. HADDAD Departamento de Zoologia, Instituto de BiocieÃncias, Unversidade Estadual Paulista, C.P. 199 13506-900 Rio Claro, SaÄo Paulo, Brazil ([email protected]) PAULO C.A. GARCIA Universidade de Mogi das Cruzes, AÂ rea de CieÃncias da SauÂde Curso de Biologia, Rua CaÃndido Xavier de Almeida e Souza 200 08780-911 Mogi das Cruzes, SaÄo Paulo, Brazil and Museu de Zoologia, Universidade de SaÄo Paulo, SaÄo Paulo, Brazil ([email protected]) DARREL R. FROST Division of Vertebrate Zoology (Herpetology), American Museum of Natural History ([email protected]) JONATHAN A. CAMPBELL Department of Biology, The University of Texas at Arlington Arlington, Texas 76019 ([email protected]) WARD C. WHEELER Division of Invertebrate Zoology, American Museum of Natural History ([email protected]) BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY CENTRAL PARK WEST AT 79TH STREET, NEW YORK, NY 10024 Number 294, 240 pp., 16 ®gures, 2 tables, 5 appendices Issued June 24, 2005 Copyright q American Museum of Natural History 2005 ISSN 0003-0090 CONTENTS Abstract ....................................................................... 6 Resumo ....................................................................... -
Supporting Online Material For
www.sciencemag.org/cgi/content/full/science.1194442/DC1 Supporting Online Material for The Impact of Conservation on the Status of the World’s Vertebrates Michael Hoffmann,* Craig Hilton-Taylor, Ariadne Angulo, Monika Böhm, Thomas M. Brooks, Stuart H. M. Butchart, Kent E. Carpenter, Janice Chanson, Ben Collen, Neil A. Cox, William R. T. Darwall, Nicholas K. Dulvy, Lucy R. Harrison, Vineet Katariya, Caroline M. Pollock, Suhel Quader, Nadia I. Richman, Ana S. L. Rodrigues, Marcelo F. Tognelli, Jean-Christophe Vié, John M. Aguiar, David J. Allen, Gerald R. Allen, Giovanni Amori, Natalia B. Ananjeva, Franco Andreone, Paul Andrew, Aida Luz Aquino Ortiz, Jonathan E. M. Baillie, Ricardo Baldi, Ben D. Bell, S. D. Biju, Jeremy P. Bird, Patricia Black-Decima, J. Julian Blanc, Federico Bolaños, Wilmar Bolivar-G., Ian J. Burfield, James A. Burton, David R. Capper, Fernando Castro, Gianluca Catullo, Rachel D. Cavanagh, Alan Channing, Ning Labbish Chao, Anna M. Chenery, Federica Chiozza, Viola Clausnitzer, Nigel J. Collar, Leah C. Collett, Bruce B. Collette, Claudia F. Cortez Fernandez, Matthew T. Craig, Michael J. Crosby, Neil Cumberlidge, Annabelle Cuttelod, Andrew E. Derocher, Arvin C. Diesmos, John S. Donaldson, J. W. Duckworth, Guy Dutson, S. K. Dutta, Richard H. Emslie, Aljos Farjon, Sarah Fowler, Jörg Freyhof, David L. Garshelis, Justin Gerlach, David J. Gower, Tandora D. Grant, Geoffrey A. Hammerson, Richard B. Harris, Lawrence R. Heaney, S. Blair Hedges, Jean- Marc Hero, Baz Hughes, Syed Ainul Hussain, Javier Icochea M., Robert F. Inger, Nobuo Ishii, Djoko T. Iskandar, Richard K. B. Jenkins, Yoshio Kaneko, Maurice Kottelat, Kit M. Kovacs, Sergius L. -
1704632114.Full.Pdf
Phylogenomics reveals rapid, simultaneous PNAS PLUS diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary Yan-Jie Fenga, David C. Blackburnb, Dan Lianga, David M. Hillisc, David B. Waked,1, David C. Cannatellac,1, and Peng Zhanga,1 aState Key Laboratory of Biocontrol, College of Ecology and Evolution, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510006, China; bDepartment of Natural History, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611; cDepartment of Integrative Biology and Biodiversity Collections, University of Texas, Austin, TX 78712; and dMuseum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720 Contributed by David B. Wake, June 2, 2017 (sent for review March 22, 2017; reviewed by S. Blair Hedges and Jonathan B. Losos) Frogs (Anura) are one of the most diverse groups of vertebrates The poor resolution for many nodes in anuran phylogeny is and comprise nearly 90% of living amphibian species. Their world- likely a result of the small number of molecular markers tra- wide distribution and diverse biology make them well-suited for ditionally used for these analyses. Previous large-scale studies assessing fundamental questions in evolution, ecology, and conser- used 6 genes (∼4,700 nt) (4), 5 genes (∼3,800 nt) (5), 12 genes vation. However, despite their scientific importance, the evolutionary (6) with ∼12,000 nt of GenBank data (but with ∼80% missing history and tempo of frog diversification remain poorly understood. data), and whole mitochondrial genomes (∼11,000 nt) (7). In By using a molecular dataset of unprecedented size, including 88-kb the larger datasets (e.g., ref. -
Froglog Promoting Conservation, Research and Education for the World’S Amphibians
Issue number 111(July 2014) ISSN: 1026-0269 eISSN: 1817-3934 Volume 22, number 3 www.amphibians.orgFrogLog Promoting Conservation, Research and Education for the World’s Amphibians A New Meeting for Amphibian Conservation in Madagascar: ACSAM2 New ASA Seed Grants Citizen Science in the City Amphibian Conservation Efforts in Ghana Recent Publications And Much More! A cryptic mossy treefrog (Spinomantis aglavei) is encountered in Andasibe during a survey for amphibian chytrid fungus and ranavirus in Madagascar. Photo by J. Jacobs. The Challenges of Amphibian Saving the Montseny Conservation in Brook Newt Tanzania FrogLog 22 (3), Number 111 (July 2014) | 1 FrogLog CONTENTS 3 Editorial NEWS FROM THE AMPHIBIAN COMMUNITY 4 A New Meeting for Amphibian Conservation in 15 The Planet Needs More Superheroes! Madagascar: ACSAM2 16 Anima Mundi—Adventures in Wildlife Photography Issue 6 Aichi Biodiversity Target 12: A Progress Report from the 15, July 2014 is now Out! Amphibian Survival Alliance 16 Recent Record of an Uncommon Endemic Frog 7 ASG Updates: New ASG Secretariat! Nanorana vicina (Stolickza, 1872) from Murree, Pakistan 8 ASG Working Groups Update 17 Global Bd Mapping Project: 2014 Update 9 New ASA Seed Grants—APPLY NOW! 22 Constructing an Amphibian Paradise in your Garden 9 Report on Amphibian Red List Authority Activities April- 24 Giants in the Anthropocene Part One of Two: Godzilla vs. July 2014 the Human Condition 10 Working Together to Make a Difference: ASA and Liquid 26 The Threatened, Exploding Frogs of the Paraguayan Dry Spark Partner -
Extinction Risk and Population Declines in Amphibians
Extinction Risk and Population Declines in Amphibians Jon Bielby Imperial College London, Division of Biology, A thesis submitted for the degree of Doctor of Philosophy at Imperial College London – May 2008 1 Thesis abstract This thesis is about understanding the processes that explain the patterns of extinction risk and declines that we see in amphibians, how we can use that understanding to set conservation priorities, and how we can convert those priorities into practical, hands-on research and management. In particular, I focus on the threat posed by the emerging infectious disease, chytridiomycosis, which is caused by the chytrid fungus, Batrachochytrium dendrobatidis ( Bd ). Amphibians display a non-random pattern of extinction risk, both taxonomically and geographically. In chapter two I investigate the mechanism behind the observed taxonomic selectivity and find that it is due to species biology rather than heterogeneity in either threat intensity or conservation knowledge. In chapter three I determine which biological and environmental traits are important in rendering a species susceptible to declines, focussing on susceptibility to Bd . I found that restricted range, high elevation species with an aquatic life-stage are more likely to have suffered a decline. Using these traits, I predict species and locations that may be susceptible in the future, and which should therefore be a high priority for amphibian research and conservation. 2 The use of predictive models to set conservation priorities relies on the accuracy of the modelling technique used. In chapter four I compare the predictive performance of both phylogenetic and nonphylogenetic regression and decision trees, and assess the suitability of each technique. -
Publications
Publications: 1) Hillis, D. M. 1974. Cannibalism among cornsnakes, Elaphe guttata guttata. Bull. Maryland Herp. Soc. 10:31-32. 2) Hillis, D. M. 1975. The genus Rana in Maryland. Nat. Hist. Soc. Maryland Herp. Leaf. 16. 3) Hillis, D. M. 1975. A hybrid Eumeces from Oklahoma. Bull. Maryland Herp. Soc. 11:177-178. 4) Hillis, D. M. 1976. Early breeding of Notophthalmus v. viridescens in Allegany County, Maryland. Bull. Maryland Herp. Soc. 12:55. 5) Hillis, D. M., and R. Miller. 1976. An instance of overwintering of larval Ambystoma maculatum in Maryland. Bull. Maryland Herp. Soc. 12:65-66. 6) Hillis, D. M. 1977. Sex ratio, mortality rate, and breeding stimuli in a Maryland population of Ambystoma maculatum. Bull. Maryland Herp. Soc. 13:84-91. 7) Hillis, D. M. 1977. An incident of death-feigning in Sonora semiannulata blanchardi. Bull. Maryland Herp. Soc. 13:116-117. 8) Hillis, D. M. 1977. A note on predation of Eumeces fasciatus by a fish. Bull. Maryland Herp. Soc. 13:117. 9) Hillis, D. M., and D. O. Lintz. 1978. The herpetological collections of the Strecker Museum. Herpetol. Rev. 9:129-130. 10) Hillis, D. M., E. Milstead, and S. L. Campbell. 1980. Inland records of Fundulus grandis (Cyprinodontidae) in Texas. Southwest. Nat. 25:271-272. 11) Hillis, D. M. 1981. Premating isolating mechanisms among three species of the Rana pipiens complex in Texas and southern Oklahoma. Copeia 1981:312-319. 12) Hillis, D. M. 1982. Morphological differentiation and adaptation of the larvae of Rana berlandieri and Rana sphenocephala (Rana pipiens complex) in sympatry.