Early Vertebrates
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Vertebrate Outline 2014
Winter 2014 EVOLUTION OF VERTEBRATES – LECTURE OUTLINE January 6 Introduction January 8 Unit 1 Vertebrate diversity and classification January 13 Unit 2 Chordate/Vertebrate bauplan January 15 Unit 3 Early vertebrates and agnathans January 20 Unit 4 Gnathostome bauplan; Life in water January 22 Unit 5 Early gnathostomes January 27 Unit 6 Chondrichthyans January 29 Unit 7 Major radiation of fishes: Osteichthyans February 3 Unit 8 Tetrapod origins and the invasion of land February 5 Unit 9 Extant amphibians: Lissamphibians February 10 Unit 10 Evolution of amniotes; Anapsids February 12 Midterm test (Units 1-8) February 17/19 Study week February 24 Unit 11 Lepidosaurs February 26 Unit 12 Mesozoic archosaurs March 3 March 5 Unit 13 Evolution of birds March 10 Unit 14 Avian flight March 12 Unit 15 Avian ecology and behaviour March 17 March 19 Unit 16 Rise of mammals March 24 Unit 17 Monotremes and marsupials March 26 Unit 18 Eutherians March 31 End of term test (Units 9-18) April 2 No lecture Winter 2014 EVOLUTION OF VERTEBRATES – LAB OUTLINE January 8 No lab January 15 Lab 1 Integuments and skeletons January 22 No lab January 29 Lab 2 Aquatic locomotion February 5 No lab February 12 Lab 3 Feeding: Form and function February 19 Study week February 26 Lab 4 Terrestrial locomotion March 5 No lab March 12 Lab 5 Flight March 19 No lab March 26 Lab 6 Sensory systems April 2 Lab exam Winter 2014 GENERAL INFORMATION AND MARKING SCHEME Professor: Dr. Janice M. Hughes Office: CB 4052; Telephone: 343-8280 Email: [email protected] Technologist: Don Barnes Office: CB 3015A; Telephone: 343-8490 Email: don [email protected] Suggested textbook: Pough, F.H., C, M, Janis, and J. -
Timeline of the Evolutionary History of Life
Timeline of the evolutionary history of life This timeline of the evolutionary history of life represents the current scientific theory Life timeline Ice Ages outlining the major events during the 0 — Primates Quater nary Flowers ←Earliest apes development of life on planet Earth. In P Birds h Mammals – Plants Dinosaurs biology, evolution is any change across Karo o a n ← Andean Tetrapoda successive generations in the heritable -50 0 — e Arthropods Molluscs r ←Cambrian explosion characteristics of biological populations. o ← Cryoge nian Ediacara biota – z ← Evolutionary processes give rise to diversity o Earliest animals ←Earliest plants at every level of biological organization, i Multicellular -1000 — c from kingdoms to species, and individual life ←Sexual reproduction organisms and molecules, such as DNA and – P proteins. The similarities between all present r -1500 — o day organisms indicate the presence of a t – e common ancestor from which all known r Eukaryotes o species, living and extinct, have diverged -2000 — z o through the process of evolution. More than i Huron ian – c 99 percent of all species, amounting to over ←Oxygen crisis [1] five billion species, that ever lived on -2500 — ←Atmospheric oxygen Earth are estimated to be extinct.[2][3] Estimates on the number of Earth's current – Photosynthesis Pong ola species range from 10 million to 14 -3000 — A million,[4] of which about 1.2 million have r c been documented and over 86 percent have – h [5] e not yet been described. However, a May a -3500 — n ←Earliest oxygen 2016 -
Placing Birds on a Dynamic Evolutionary Map: Using Digital Tools to Update the Evolutionary Metaphor of the "Tree of Life"
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2012 Placing Birds On A Dynamic Evolutionary Map: Using Digital Tools To Update The Evolutionary Metaphor Of The "Tree Of Life" Sonia Stephens University of Central Florida Part of the Ecology and Evolutionary Biology Commons, Graphic Communications Commons, and the Rhetoric Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Stephens, Sonia, "Placing Birds On A Dynamic Evolutionary Map: Using Digital Tools To Update The Evolutionary Metaphor Of The "Tree Of Life"" (2012). Electronic Theses and Dissertations, 2004-2019. 2264. https://stars.library.ucf.edu/etd/2264 PLACING BIRDS ON A DYNAMIC EVOLUTIONARY MAP: USING DIGITAL TOOLS TO UPDATE THE EVOLUTIONARY METAPHOR OF THE “TREE OF LIFE” by SONIA H. STEPHENS B.S. University of Hawaii, 1999 M.S. University of Hawaii, 2003 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of English in the College of Arts and Humanities at the University of Central Florida Orlando, Florida Spring Term 2012 Major Professor: Paul Dombrowski ©2012 Sonia H. Stephens ii ABSTRACT This dissertation describes and presents a new type of interactive visualization for communicating about evolutionary biology, the dynamic evolutionary map. This web-based tool utilizes a novel map-based metaphor to visualize evolution, rather than the traditional “tree of life.” The dissertation begins with an analysis of the conceptual affordances of the traditional tree of life as the dominant metaphor for evolution. -
Regulatory Circuit Rewiring and Functional Divergence of the Duplicate Admp Genes in Dorsoventral Axial Patterning
Developmental Biology 410 (2016) 108–118 Contents lists available at ScienceDirect Developmental Biology journal homepage: www.elsevier.com/locate/developmentalbiology Evolution of Developmental Control Mechanisms Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning Yi-Cheng Chang a,b, Chih-Yu Pai a, Yi-Chih Chen a, Hsiu-Chi Ting a, Pedro Martinez c,d, Maximilian J. Telford e, Jr-Kai Yu a, Yi-Hsien Su a,b,n a Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan b Department of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan c Department de Genètica, Universitat de Barcelona, Barcelona, Spain d Institució de Recerca I Estudis Avançats (ICREA), Barcelona, Spain e Department of Genetics, Evolution and Environment, University College London, London, UK article info abstract Article history: The spatially opposed expression of Antidorsalizing morphogenetic protein (Admp) and BMP signals Received 18 December 2015 controls dorsoventral (DV) polarity across Bilateria and hence represents an ancient regulatory circuit. Accepted 18 December 2015 Here, we show that in addition to the conserved admp1 that constitutes the ancient circuit, a second Available online 21 December 2015 admp gene (admp2) is present in Ambulacraria (EchinodermataþHemichordata) and two marine worms Keywords: belonging to Xenoturbellida and Acoelomorpha. The phylogenetic distribution implies that the two admp BMP genes were duplicated in the Bilaterian common ancestor and admp2 was subsequently lost in chordates Admp and protostomes. We show that the ambulacrarian admp1 and admp2 are under opposite transcriptional Sea urchin control by BMP signals and knockdown of Admps in sea urchins impaired their DV polarity. -
The Origin and Evolution of Model Organisms
REVIEWS THE ORIGIN AND EVOLUTION OF MODEL ORGANISMS S. Blair Hedges The phylogeny and timescale of life are becoming better understood as the analysis of genomic data from model organisms continues to grow. As a result, discoveries are being made about the early history of life and the origin and development of complex multicellular life. This emerging comparative framework and the emphasis on historical patterns is helping to bridge barriers among organism-based research communities. Model organisms represent only a small fraction of the these species are receiving an unusually large amount of biodiversity that exists on Earth, although the research attention from the research community and fall under that has resulted from their study forms the core of bio- the broad definition of “model organism”. logical knowledge. Historically, research communities Knowledge of the relationships and times of origin of — often in isolation from one another — have focused these species can have a profound effect on diverse areas on these model organisms to gain an insight into the of research2. For example, identifying the closest relatives general principles that underlie various disciplines, such of a disease vector will help to decipher unique traits — as genetics, development and evolution. This has such as single-nucleotide polymorphisms — that might changed in recent years with the availability of complete contribute to a disease phenotype. Similarly, knowing genome sequences from many model organisms, which that our closest relative is the chimpanzee is crucial for has greatly facilitated comparisons between the different identifying genetic changes in coding and regulatory species and increased interactions among organism- genomic regions that are unique to humans, and are based research communities. -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
Honey Bee from Wikipedia, the Free Encyclopedia
Honey bee From Wikipedia, the free encyclopedia A honey bee (or honeybee) is any member of the genus Apis, primarily distinguished by the production and storage of honey and the Honey bees construction of perennial, colonial nests from wax. Currently, only seven Temporal range: Oligocene–Recent species of honey bee are recognized, with a total of 44 subspecies,[1] PreЄ Є O S D C P T J K Pg N though historically six to eleven species are recognized. The best known honey bee is the Western honey bee which has been domesticated for honey production and crop pollination. Honey bees represent only a small fraction of the roughly 20,000 known species of bees.[2] Some other types of related bees produce and store honey, including the stingless honey bees, but only members of the genus Apis are true honey bees. The study of bees, which includes the study of honey bees, is known as melittology. Western honey bee carrying pollen Contents back to the hive Scientific classification 1 Etymology and name Kingdom: Animalia 2 Origin, systematics and distribution 2.1 Genetics Phylum: Arthropoda 2.2 Micrapis 2.3 Megapis Class: Insecta 2.4 Apis Order: Hymenoptera 2.5 Africanized bee 3 Life cycle Family: Apidae 3.1 Life cycle 3.2 Winter survival Subfamily: Apinae 4 Pollination Tribe: Apini 5 Nutrition Latreille, 1802 6 Beekeeping 6.1 Colony collapse disorder Genus: Apis 7 Bee products Linnaeus, 1758 7.1 Honey 7.2 Nectar Species 7.3 Beeswax 7.4 Pollen 7.5 Bee bread †Apis lithohermaea 7.6 Propolis †Apis nearctica 8 Sexes and castes Subgenus Micrapis: 8.1 Drones 8.2 Workers 8.3 Queens Apis andreniformis 9 Defense Apis florea 10 Competition 11 Communication Subgenus Megapis: 12 Symbolism 13 Gallery Apis dorsata 14 See also 15 References 16 Further reading Subgenus Apis: 17 External links Apis cerana Apis koschevnikovi Etymology and name Apis mellifera Apis nigrocincta The genus name Apis is Latin for "bee".[3] Although modern dictionaries may refer to Apis as either honey bee or honeybee, entomologist Robert Snodgrass asserts that correct usage requires two words, i.e. -
Department of ZOOLOGY Museum Specimens
P.E. Society’s Modern College of Arts, Science and Commerce Ganesh-Khind, Pune – 411 053 http://www.moderncollegegk.org Department of ZOOLOGY Museum Specimens 1 Phylum Porifera 2 SyconSycon n Kingdom: Animalia n Phylum: Porifera n Class: Pharetronida n Order: Sycettida n Genus: Sycon n General Characteristics: Sycon is a genus of calcareous sponges. These sponges are small, growing up to 5 cm in total length, and are tube- shaped and often white to cream in colour. The surface is hairy and spiky tufts of stiff spicules surround the osculum. 3 SpongillaSpongilla n Kingdom: Animalia n Phylum: Porifera n Class: Demospongiae n Order: Haplosclerida n Genus: Spongilla n General Characteristics: Spongilla dwells in lakes and slow streams. Spongilla attach themselves to rocks and logs and filter the water for various small aquatic organisms such as protozoa, bacteria, and other free-floating pond life. fresh-water sponges are exposed to far more adverse and variable environmental conditions, and therefore they have developed gemmules as a means of dormancy. When exposed to excessively cold or otherwise harsh situations, the sponges form these gemmules, which are highly resistant "buds" that can live dormantly after the mother sponge has died. When conditions improve, the gemmules will "germinate" and a new sponge is born. 4 Phylum Coelenterata 5 JellyJelly fishfish n Kingdom: Animalia n Phylum: Coelentrata n Subphylum: Medusozoa n Class: Scyphozoa n Order: Semaeostomeae n Genus: Aurelia n General Characteristics: Jellyfish are free-swimming members. Jellyfish have several different morphologies that represent several different cnidarian Jellyfish are found in every ocean, from the surface to the deep sea. -
Extreme Positive Allometry of Animal Adhesive Pads and the Size Limits of Adhesion-Based Climbing
Extreme positive allometry of animal adhesive pads and the size limits of adhesion-based climbing David Labontea,1, Christofer J. Clementeb, Alex Dittrichc, Chi-Yun Kuod, Alfred J. Crosbye, Duncan J. Irschickd, and Walter Federlea aDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom; bSchool of Science and Engineering, University of the Sunshine Coast, Sippy Downs, QLD 4556, Australia; cDepartment of Life Sciences, Anglia Ruskin University, Cambridge CB1 1PT, United Kingdom; dBiology Department, University of Massachusetts Amherst, Amherst, MA 01003; and eDepartment of Polymer Science and Engineering, University of Massachusetts Amherst, Amherst, MA 01003 Edited by David B. Wake, University of California, Berkeley, CA, and approved December 11, 2015 (received for review October 7, 2015) Organismal functions are size-dependent whenever body surfaces animals to climb smooth vertical or inverted surfaces, thereby supply body volumes. Larger organisms can develop strongly opening up new habitats. Adhesive pads have evolved multiple folded internal surfaces for enhanced diffusion, but in many cases times independently within arthropods, reptiles, amphibians, and areas cannot be folded so that their enlargement is constrained by mammals and show impressive performance: They are rapidly anatomy, presenting a problem for larger animals. Here, we study controllable, can be used repeatedly without any loss of perfor- the allometry of adhesive pad area in 225 climbing animal species, mance, and function on rough, dirty, and flooded surfaces (12). This covering more than seven orders of magnitude in weight. Across performance has inspired a considerable amount of work on tech- all taxa, adhesive pad area showed extreme positive allometry and nical adhesives that mimic these properties (13). -
Executive Summary
Executive Summary Life on Earth seeks to improve visitor understanding of evolution by combining innovative information visualizations with a multi‐user interactive tabletop technology. Building on research in the learning sciences and human‐computer interaction, our project offers visitors the opportunity not only to see but also to touch, and explore over seventy thousand species in a phylogenetic Tree of Life. Our goal is to help visitors understand evolution through common ancestry while bridging macro‐evolutionary patterns of change with micro‐evolutionary processes. Life on Earth includes three types of evolution experiences DeepTree is an interactive visualization based on data from the Tree of Life Web Project (tolweb.org), the Encyclopedia of Life (eol.org), National Center for Biotechnology Information (www.ncbi.nlm.nih.gov) and the TimeTree knowledge base (timetree.org). This tree of life represents the evolutionary relationship of species from the beginning of life to the present. The DeepTree provides a deep zoom interface, allowing visitors to “fly through” the vast array of diverse living species. The exhibit emphasizes the idea that all life on earth is related through shared derived traits, and includes major times of divergence. FloTree is a multi‐user simulation illustrating the dynamic processes underlying evolution. FloTree links population‐level processes to speciation and biodiversity. By placing hands or arms on the surface of the multi‐touch table, visitors discover how a population of organisms changes from one generation to the next. As the visitors add environmental barriers, they see the effects of interrupting the gene flow between populations and how this results in the formation of new species. -
Biodiversity
Founded in 1888 as the Marine Biological Laboratory Catalyst SPRING 2012 VOLUME 7, NUMBER 1 IN THIS ISSUE 4 All Species, Great and Small 8 Microbial Diversity, Leaf by Leaf 10 Life, Literature, and the Pursuit of Global Access BIODIVERSITY: Exploring Life on Earth Page 2 F R OM THE D ir ECTO R MBL Catalyst Dear Friends, SPRING 2012 VOLUME 7, NUMBER 1 In February, a group of MBL trustees, overseers, and friends took a memorable MBL Catalyst is published twice yearly by the Office of “eco-expedition” by safari through East Africa. For most of us, the most exciting Communications at the Marine Biological Laboratory aspect was seeing the megafauna – giraffes, zebras, lions, warthogs, wildebeests, (MBL) in Woods Hole, Massachusetts. The MBL is rhinoceroses—roaming wild in a pristine landscape. Except in tropical Asia, these dedicated to scientific discovery and improving the human condition through research and education large, charismatic animals aren’t found anywhere else on the planet—not in the in biology, biomedicine, and environmental science. Americas, Europe, Australia, or New Zealand. Founded in 1888, the MBL is an independent, nonprofit corporation. Why did they disappear? The reasons are debated, but there is good evidence Senior Advisors that overkill by prehistoric humans caused major losses. Unfortunately, the near- President and Director: Gary Borisy Chief Academic and extinction of these species 10,000 to 50,000 years ago is not the end of the story. Scientific Officer: Joshua Hamilton It is generally agreed that the Earth is facing another biodiversity crisis in this Director of External Relations: Pamela Clapp Hinkle century, with extinctions largely driven by destruction of habitat. -
Uncorrected Proof
JrnlID 12526_ArtID 933_Proof# 1 - 07/12/2018 Marine Biodiversity https://doi.org/10.1007/s12526-018-0933-2 1 3 ORIGINAL PAPER 2 4 5 On the larva and the zooid of the pterobranch Rhabdopleura recondita 6 Beli, Cameron and Piraino, 2018 (Hemichordata, Graptolithina) 7 F. Strano1,2 & V. Micaroni3 & E. Beli4,5 & S. Mercurio6 & G. Scarì7 & R. Pennati6 & S. Piraino4,8 8 9 Received: 31 October 2018 /Revised: 29 November 2018 /Accepted: 3 December 2018 10 # Senckenberg Gesellschaft für Naturforschung 2018 11 Abstract 12 Hemichordates (Enteropneusta and Pterobranchia) belong to a small deuterostome invertebrate group that may offer insights on 13 the origin and evolution of the chordate nervous system. Among them, the colonial pterobranchOF Rhabdopleuridae are recognized 14 as living representatives of Graptolithina, a taxon with a rich fossil record. New information is provided here on the substrate 15 selection and the life cycle of Rhabdopleura recondita Beli, Cameron and Piraino, 2018, and for the first time, we describe the 16 nervous system organization of the larva and the adult zooid, as well as the morphological, neuroanatomical and behavioural 17 changes occurring throughout metamorphosis. Immunohistochemical analyses disclosed a centralized nervous system in the 18 sessile adult zooid, characterized by different neuronal subsets with three distinctPRO neurotransmitters, i.e. serotonin, dopamine and 19 RFamide. The peripheral nervous system comprises GABA-, serotonin-, and dopamine-immunoreactive cells. These observa- 20 tions support and integrate previous neuroanatomical findings on the pterobranchD zooid of Cephalodiscus gracilis. Indeed, this is 21 the first evidence of dopamine, RFamide and GABA neurotransmittersE in hemichordates pterobranchs. In contrast, the 22 lecithotrophic larva is characterized by a diffuse basiepidermal plexus of GABAergic cells, coupled with a small group of 23 serotonin-immunoreactive cells localized in the characteristic ventral depression.