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A New Species of the Genus Harpadon (Aulopiformes, Synodontidae) from the North-Eastern Arabian Sea, India
Indian J. Fish., 62(4) : 1-9, 2015 1 A new species of the Genus Harpadon (Aulopiformes, Synodontidae) from the north-eastern Arabian Sea, India U. GANGA, JINESH P. THOMAS AND SANDHYA SUKUMARAN ICAR-Central Marine Fisheries Research Institute, P. B. No. 1603, Ernakulam North P. O. Kochi - 682 018, Kerala, India e-mail: [email protected] ABSTRACT A new species of Harpadon Lesueur, 1825 captured from the continental slope area 19° 53’ N - 69° 23’E (north-eastern Arabian Sea) is described. The species Harpadon nudus sp. nov. was identified possessing a prominent trilobed caudal fin and a wide mouth with strong fang like barbed teeth and has been distinguished from its congeners by the following combination of characters: slender, completely scaleless body with very short pectoral (8.6 - 13.8% SL) and pelvic (16.4 - 21.6% SL) fins, large eyes (9.1 - 15.1% HL) with narrow inter-orbital width (15% of HL) and single pair of nares, situated close to the tip of the narrow snout. Morphologically it differs from the partially scaled species such as Harpadon nehereus in having very short pectoral fins not reaching up to its dorsal fin, single pair of nares and a pointed snout in dorsal view. It can be distinguished from Harpadon microchir by its greater head length of 22 - 26% SL; absence of scales at the base of the adipose fin and on the lateral line as well as the dorsal fin count of 12 rays. It is differentiated from Harpadon mortenseni by its lower lateral line pores count (40 - 43), higher number of branchiostegals (17 to 20), absence of scales on the lateral line or caudal peduncle and absence of vomerine teeth. -
Brains of Primitive Chordates 439
Brains of Primitive Chordates 439 Brains of Primitive Chordates J C Glover, University of Oslo, Oslo, Norway although providing a more direct link to the evolu- B Fritzsch, Creighton University, Omaha, NE, USA tionary clock, is nevertheless hampered by differing ã 2009 Elsevier Ltd. All rights reserved. rates of evolution, both among species and among genes, and a still largely deficient fossil record. Until recently, it was widely accepted, both on morpholog- ical and molecular grounds, that cephalochordates Introduction and craniates were sister taxons, with urochordates Craniates (which include the sister taxa vertebrata being more distant craniate relatives and with hemi- and hyperotreti, or hagfishes) represent the most chordates being more closely related to echinoderms complex organisms in the chordate phylum, particu- (Figure 1(a)). The molecular data only weakly sup- larly with respect to the organization and function of ported a coherent chordate taxon, however, indicat- the central nervous system. How brain complexity ing that apparent morphological similarities among has arisen during evolution is one of the most chordates are imposed on deep divisions among the fascinating questions facing modern science, and it extant deuterostome taxa. Recent analysis of a sub- speaks directly to the more philosophical question stantially larger number of genes has reversed the of what makes us human. Considerable interest has positions of cephalochordates and urochordates, pro- therefore been directed toward understanding the moting the latter to the most closely related craniate genetic and developmental underpinnings of nervous relatives (Figure 1(b)). system organization in our more ‘primitive’ chordate relatives, in the search for the origins of the vertebrate Comparative Appearance of Brains, brain in a common chordate ancestor. -
Travels on the Backbone Crest (A Group of Embryonic Cells)
BOOKS & ARTS COMMENT EVOLUTION non-deuterostomes. In the most effective section, he strips vertebrates down to their parts, such as the nerve cord, notochord (fore- runner of the vertebral column) and neural Travels on the backbone crest (a group of embryonic cells). He even delves into the largely ignored gut and viscera. Chris Lowe lauds a study of vertebrate origins that Gee discusses how data from living and brings us up to date with a shifting field. fossilized hemichordates and echinoderms have facilitated the search for the origins of the defining chordate anatomies. He ome of the great remaining mysteries groups belong in the highlights how palaeontological, develop- in zoology concern origins — of multi- deuterostome lineage mental and genomic data now all support cellularity, complex nervous systems, of animals alongside the idea that the common ancestor of chor- Slife cycles and sex, for example. The chordates — have dates, hemichordates and echinoderms had evolutionary origin of vertebrates is among largely been resolved. pharyngeal gill slits for filter feeding. That the most intractable of these, despite more Others are as intrac- gives us a glimpse of the early chordate ances- than a century of work spanning a range of table as ever, including tor, which lived around 600 million years ago. disciplines and animal groups. where to place key fos- Other features, such as a complex brain, prob- In Across the Bridge, Henry Gee reviews sil groups such as the ably emerged much later. Having established the most recent research in this area. Gee curious vetulicolians, Across the Bridge: a hazy picture of the earliest chordates, Gee (the senior editor responsible for palae- which lived during Understanding focuses on building vertebrates and their the Origin of the ontology and evolutionary development the Cambrian period, Vertebrates defining features from the basic chordate at Nature) synthesizes contributions from some 541 million to HENRY GEE body plan, for example through spectacular anatomy, developmental biology, genomics, 485 million years ago. -
Resembling Those of Antigen Receptors Receptor Family with A
Hagfish Leukocytes Express a Paired Receptor Family with a Variable Domain Resembling Those of Antigen Receptors This information is current as Takashi Suzuki, Tadasu Shin-I, Asao Fujiyama, Yuji Kohara of September 29, 2021. and Masanori Kasahara J Immunol 2005; 174:2885-2891; ; doi: 10.4049/jimmunol.174.5.2885 http://www.jimmunol.org/content/174/5/2885 Downloaded from References This article cites 37 articles, 11 of which you can access for free at: http://www.jimmunol.org/content/174/5/2885.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 29, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2005 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Hagfish Leukocytes Express a Paired Receptor Family with a Variable Domain Resembling Those of Antigen Receptors1,2 Takashi Suzuki,* Tadasu Shin-I,§ Asao Fujiyama,†¶ʈ Yuji Kohara,‡§ and Masanori Kasahara3* Jawed vertebrates are equipped with TCR and BCR with the capacity to rearrange their V domains. -
Metabarcoding in the Abyss: Uncovering Deep-Sea Biodiversity Through Environmental
Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA Miriam Isabelle Brandt To cite this version: Miriam Isabelle Brandt. Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA. Agricultural sciences. Université Montpellier, 2020. English. NNT : 2020MONTG033. tel-03197842 HAL Id: tel-03197842 https://tel.archives-ouvertes.fr/tel-03197842 Submitted on 14 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE M ONTPELLIER En Sciences de l'Évolution et de la Biodiversité École doctorale GAIA Unité mixte de recherche MARBEC Pourquoi Pas les Abysses ? L’ADN environnemental pour l’étude de la biodiversité des grands fonds marins Metabarcoding in the abyss: uncovering deep - sea biodiversity through environmental DNA Présentée par Miriam Isabelle BRANDT Le 10 juillet 2020 Sous la direction de Sophie ARNAUD-HAOND et Daniela ZEPPILLI Devant le jury composé de Sofie DERYCKE, Senior researcher/Professeur rang A, ILVO, Belgique Rapporteur -
Snotty Hagfish
DOWNLOADABLE EXTRAS Introduction to Science 9 Dissecting an Article: Snotty Hagfish When you threaten a hagfi sh, it squirts a huge amount of snotty goo from hundreds of glands that run along its sides. The goo is in such large quantities it could gag a large predator like a shark. The goo that they secrete can expand to 20 litres when it is combined with water; it is like mixing powdered glue paste up for papier-mâché. This goo is produced as a defence mechanism where they become so slippery that the predator can’t hold on to them. They can also tie themselves into a knot spreading the goo all over the predator, this twisting pretzel movement also removes the goo that is sticking them to themselves so that they can escape. The hagfi sh is mainly prey for birds and mammals, with very few sea creatures daring to eat the slimy snot ball. Scientists think that this could be because the goo is able to block fi sh’s gills which would suffocate them so instead they stay away. Hagfi sh are an eel-like marine fi sh that are found in deep areas of the ocean. Hagfi sh occur in a range of colours including pink, brown, blue, grey and even black or white spotted. They are very simple fi sh and lack a true eye. They have a series of eye spots instead that detect light rather than actually see objects. Hagfi sh use long whiskers around their mouths called barbels to help them sense the things in their environment. -
Animal Phylum Poster Porifera
Phylum PORIFERA CNIDARIA PLATYHELMINTHES ANNELIDA MOLLUSCA ECHINODERMATA ARTHROPODA CHORDATA Hexactinellida -- glass (siliceous) Anthozoa -- corals and sea Turbellaria -- free-living or symbiotic Polychaetes -- segmented Gastopods -- snails and slugs Asteroidea -- starfish Trilobitomorpha -- tribolites (extinct) Urochordata -- tunicates Groups sponges anemones flatworms (Dugusia) bristleworms Bivalves -- clams, scallops, mussels Echinoidea -- sea urchins, sand Chelicerata Cephalochordata -- lancelets (organisms studied in detail in Demospongia -- spongin or Hydrazoa -- hydras, some corals Trematoda -- flukes (parasitic) Oligochaetes -- earthworms (Lumbricus) Cephalopods -- squid, octopus, dollars Arachnida -- spiders, scorpions Mixini -- hagfish siliceous sponges Xiphosura -- horseshoe crabs Bio1AL are underlined) Cubozoa -- box jellyfish, sea wasps Cestoda -- tapeworms (parasitic) Hirudinea -- leeches nautilus Holothuroidea -- sea cucumbers Petromyzontida -- lamprey Mandibulata Calcarea -- calcareous sponges Scyphozoa -- jellyfish, sea nettles Monogenea -- parasitic flatworms Polyplacophora -- chitons Ophiuroidea -- brittle stars Chondrichtyes -- sharks, skates Crustacea -- crustaceans (shrimp, crayfish Scleropongiae -- coralline or Crinoidea -- sea lily, feather stars Actinipterygia -- ray-finned fish tropical reef sponges Hexapoda -- insects (cockroach, fruit fly) Sarcopterygia -- lobed-finned fish Myriapoda Amphibia (frog, newt) Chilopoda -- centipedes Diplopoda -- millipedes Reptilia (snake, turtle) Aves (chicken, hummingbird) Mammalia -
Regulatory Circuit Rewiring and Functional Divergence of the Duplicate Admp Genes in Dorsoventral Axial Patterning
Developmental Biology 410 (2016) 108–118 Contents lists available at ScienceDirect Developmental Biology journal homepage: www.elsevier.com/locate/developmentalbiology Evolution of Developmental Control Mechanisms Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning Yi-Cheng Chang a,b, Chih-Yu Pai a, Yi-Chih Chen a, Hsiu-Chi Ting a, Pedro Martinez c,d, Maximilian J. Telford e, Jr-Kai Yu a, Yi-Hsien Su a,b,n a Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan b Department of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan c Department de Genètica, Universitat de Barcelona, Barcelona, Spain d Institució de Recerca I Estudis Avançats (ICREA), Barcelona, Spain e Department of Genetics, Evolution and Environment, University College London, London, UK article info abstract Article history: The spatially opposed expression of Antidorsalizing morphogenetic protein (Admp) and BMP signals Received 18 December 2015 controls dorsoventral (DV) polarity across Bilateria and hence represents an ancient regulatory circuit. Accepted 18 December 2015 Here, we show that in addition to the conserved admp1 that constitutes the ancient circuit, a second Available online 21 December 2015 admp gene (admp2) is present in Ambulacraria (EchinodermataþHemichordata) and two marine worms Keywords: belonging to Xenoturbellida and Acoelomorpha. The phylogenetic distribution implies that the two admp BMP genes were duplicated in the Bilaterian common ancestor and admp2 was subsequently lost in chordates Admp and protostomes. We show that the ambulacrarian admp1 and admp2 are under opposite transcriptional Sea urchin control by BMP signals and knockdown of Admps in sea urchins impaired their DV polarity. -
Zootaxa, First Report of Aulopus (Teleostei: Aulopidae) From
Zootaxa 2628: 27–42 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) First report of Aulopus (Teleostei: Aulopidae) from Southwestern Atlantic, with a review of records and a key to Western Atlantic Aulopoidei species ALFREDO CARVALHO-FILHO1,4, GUY MARCOVALDI2, CLÁUDIO L. S. SAMPAIO3, M. ISABEL G. PAIVA2 & LUIZ A. G. DUARTE2 1Fish-Bizz Ltda. Rua Maria Garcez, 39, São Paulo, SP, 05424-070, Brasil 2Projeto Tamar-ICMBio. Avenida do Farol Garcia D´Ávila, s/n, Praia do Forte, Mata de São João, BA, 48280-000, Brasil 3Universidade Federal de Alagoas, Unidade de Ensino Penedo. Av. Beira Rio s/n°, Centro Histórico, Penedo, AL. 57.200-000 4Corresponding author. E-mail: [email protected] Abstract In this second paper dedicated to report on deep-sea fishes from Brazilian waters, mainly from Bahia, the presence of one family and three species of Aulopoidei is reported for the first time from Brazilian waters: the aulopid Aulopus filamentosus (royal flagfin), the synodontids Saurida normani and Synodus poeyi (shortjaw lizardfish and offshore lizardfish, respectively). The presence of Synodus saurus and Saurida suspicio in Brazilian waters is discussed, and a key to the Western Atlantic Aulopoidei is provided. Key words: Lizardfishes, flagfin, Aulopus, Saurida, Synodus, Aulopidae, Synodontidae, deep-sea fishes Introduction According to Davis (2010), the world-wide marine and usually deep-sea, benthic or pelagic Aulopiformes order, contains 16 families, split in 3 suborders of extant taxa: Alepisauroidei (Alepisauridae, Bathysauridae, Bathysauroididae, Bathysauropsidae, Chlorophthalmidae, Evermannellidae, Giganturidae, Ipnopidae, Notosudidae, Paralepididae, Scopelarchidae and Sudidae), Paraulopoidei (Paraulopidae), and Aulopoidei (Aulopidae, Pseudotrichonotidae, and Synodontidae). -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
Euteleostei: Aulopiformes) and the Timing of Deep-Sea Adaptations ⇑ Matthew P
Molecular Phylogenetics and Evolution 57 (2010) 1194–1208 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Estimating divergence times of lizardfishes and their allies (Euteleostei: Aulopiformes) and the timing of deep-sea adaptations ⇑ Matthew P. Davis a, , Christopher Fielitz b a Museum of Natural Science, Louisiana State University, 119 Foster Hall, Baton Rouge, LA 70803, USA b Department of Biology, Emory & Henry College, Emory, VA 24327, USA article info abstract Article history: The divergence times of lizardfishes (Euteleostei: Aulopiformes) are estimated utilizing a Bayesian Received 18 May 2010 approach in combination with knowledge of the fossil record of teleosts and a taxonomic review of fossil Revised 1 September 2010 aulopiform taxa. These results are integrated with a study of character evolution regarding deep-sea evo- Accepted 7 September 2010 lutionary adaptations in the clade, including simultaneous hermaphroditism and tubular eyes. Diver- Available online 18 September 2010 gence time estimations recover that the stem species of the lizardfishes arose during the Early Cretaceous/Late Jurassic in a marine environment with separate sexes, and laterally directed, round eyes. Keywords: Tubular eyes have arisen independently at different times in three deep-sea pelagic predatory aulopiform Phylogenetics lineages. Simultaneous hermaphroditism evolved a single time in the stem species of the suborder Character evolution Deep-sea Alepisauroidei, the clade of deep-sea aulopiforms during the Early Cretaceous. This result indicates the Euteleostei oldest known evolutionary event of simultaneous hermaphroditism in vertebrates, with the Alepisauroidei Hermaphroditism being the largest vertebrate clade with this reproductive strategy. Divergence times Ó 2010 Elsevier Inc.