The Western Pacific Barred Knifejaw, Oplegnathus
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
A List of Common and Scientific Names of Fishes from the United States And
t a AMERICAN FISHERIES SOCIETY QL 614 .A43 V.2 .A 4-3 AMERICAN FISHERIES SOCIETY Special Publication No. 2 A List of Common and Scientific Names of Fishes -^ ru from the United States m CD and Canada (SECOND EDITION) A/^Ssrf>* '-^\ —---^ Report of the Committee on Names of Fishes, Presented at the Ei^ty-ninth Annual Meeting, Clearwater, Florida, September 16-18, 1959 Reeve M. Bailey, Chairman Ernest A. Lachner, C. C. Lindsey, C. Richard Robins Phil M. Roedel, W. B. Scott, Loren P. Woods Ann Arbor, Michigan • 1960 Copies of this publication may be purchased for $1.00 each (paper cover) or $2.00 (cloth cover). Orders, accompanied by remittance payable to the American Fisheries Society, should be addressed to E. A. Seaman, Secretary-Treasurer, American Fisheries Society, Box 483, McLean, Virginia. Copyright 1960 American Fisheries Society Printed by Waverly Press, Inc. Baltimore, Maryland lutroduction This second list of the names of fishes of The shore fishes from Greenland, eastern the United States and Canada is not sim- Canada and the United States, and the ply a reprinting with corrections, but con- northern Gulf of Mexico to the mouth of stitutes a major revision and enlargement. the Rio Grande are included, but those The earlier list, published in 1948 as Special from Iceland, Bermuda, the Bahamas, Cuba Publication No. 1 of the American Fisheries and the other West Indian islands, and Society, has been widely used and has Mexico are excluded unless they occur also contributed substantially toward its goal of in the region covered. In the Pacific, the achieving uniformity and avoiding confusion area treated includes that part of the conti- in nomenclature. -
En Guaymas, Sonora, Durante L
BYCATCH OF THE ARTISANAL SHRIMP FISHERY IN THE GULF OF CALIFORNIA (SONORA AND SINALOA) MEXICO Report prepared by Alejandro Balmori Ramírez (INAPESCA, CRIP-Guaymas) and Rufino Morales Azpeitia (CIBNOR-Unidad Guaymas), in collaboration with Everardo Miranda Mier and Jesús Guadalupe Padilla Serrato. Guaymas, Sonora, México. June 2012 Summary One of the most important fishing resources in Mexico is shrimp, this is due to its high economic and social value. Nonetheless, many non-target species are captured incidentally during shrimp-fishing activities, and grouped as faunal companions or shrimp bycatch (SBC). Most of the SBC species have not been studied and the impact of this fishery upon them is yet unknown. This document presents the results of a study on the artisanal shrimp fisheries’ bycatch within the bays of Guaymas, Bahía de Lobos, and El Tóbari, in the State of Sonora; and in Santa Maria La Reforma in the State of Sinaloa, during the 2011–2012 shrimp fishing season. The study collected shrimp and SBC samples, identified the organisms to the species level, and recorded biological sampling (biometrics). Logbook data and sampling information was captured in a database. We documented 854 fishing hauls for all of the bays. SBC analysis shows a total composition of 46 identified species belonging to different taxonomic groups such as fishes, crustaceans, gastropods, and elasmobranchs, and an additional 10 species identified to the genus level only. The most diverse group was that of bony fishes and the most dominant species was the swimming crab (Callinectes spp.). The amount of SBC species varied spatially (lagoon system). During the shrimping activity, a high percentage (20-30%) of negative fishing hauls (i.e., without any SBC captures) was recorded, indicating that the artisanal shrimp fishery does not generate any bycatch in a third of all fishing hauls. -
Guide to the Coastal Marine Fishes of California
STATE OF CALIFORNIA THE RESOURCES AGENCY DEPARTMENT OF FISH AND GAME FISH BULLETIN 157 GUIDE TO THE COASTAL MARINE FISHES OF CALIFORNIA by DANIEL J. MILLER and ROBERT N. LEA Marine Resources Region 1972 ABSTRACT This is a comprehensive identification guide encompassing all shallow marine fishes within California waters. Geographic range limits, maximum size, depth range, a brief color description, and some meristic counts including, if available: fin ray counts, lateral line pores, lateral line scales, gill rakers, and vertebrae are given. Body proportions and shapes are used in the keys and a state- ment concerning the rarity or commonness in California is given for each species. In all, 554 species are described. Three of these have not been re- corded or confirmed as occurring in California waters but are included since they are apt to appear. The remainder have been recorded as occurring in an area between the Mexican and Oregon borders and offshore to at least 50 miles. Five of California species as yet have not been named or described, and ichthyologists studying these new forms have given information on identification to enable inclusion here. A dichotomous key to 144 families includes an outline figure of a repre- sentative for all but two families. Keys are presented for all larger families, and diagnostic features are pointed out on most of the figures. Illustrations are presented for all but eight species. Of the 554 species, 439 are found primarily in depths less than 400 ft., 48 are meso- or bathypelagic species, and 67 are deepwater bottom dwelling forms rarely taken in less than 400 ft. -
Chec List Marine and Coastal Biodiversity of Oaxaca, Mexico
Check List 9(2): 329–390, 2013 © 2013 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution ǡ PECIES * S ǤǦ ǡÀ ÀǦǡ Ǧ ǡ OF ×±×Ǧ±ǡ ÀǦǡ Ǧ ǡ ISTS María Torres-Huerta, Alberto Montoya-Márquez and Norma A. Barrientos-Luján L ǡ ǡǡǡǤͶǡͲͻͲʹǡǡ ǡ ȗ ǤǦǣ[email protected] ćĘęėĆĈęǣ ϐ Ǣ ǡǡ ϐǤǡ ǤǣͳȌ ǢʹȌ Ǥͳͻͺ ǯϐ ʹǡͳͷ ǡͳͷ ȋǡȌǤǡϐ ǡ Ǥǡϐ Ǣ ǡʹͶʹȋͳͳǤʹΨȌ ǡ groups (annelids, crustaceans and mollusks) represent about 44.0% (949 species) of all species recorded, while the ʹ ȋ͵ͷǤ͵ΨȌǤǡ not yet been recorded on the Oaxaca coast, including some platyhelminthes, rotifers, nematodes, oligochaetes, sipunculids, echiurans, tardigrades, pycnogonids, some crustaceans, brachiopods, chaetognaths, ascidians and cephalochordates. The ϐϐǢ Ǥ ēęėĔĉĚĈęĎĔē Madrigal and Andreu-Sánchez 2010; Jarquín-González The state of Oaxaca in southern Mexico (Figure 1) is and García-Madrigal 2010), mollusks (Rodríguez-Palacios known to harbor the highest continental faunistic and et al. 1988; Holguín-Quiñones and González-Pedraza ϐ ȋ Ǧ± et al. 1989; de León-Herrera 2000; Ramírez-González and ʹͲͲͶȌǤ Ǧ Barrientos-Luján 2007; Zamorano et al. 2008, 2010; Ríos- ǡ Jara et al. 2009; Reyes-Gómez et al. 2010), echinoderms (Benítez-Villalobos 2001; Zamorano et al. 2006; Benítez- ϐ Villalobos et alǤʹͲͲͺȌǡϐȋͳͻͻǢǦ Ǥ ǡ 1982; Tapia-García et alǤ ͳͻͻͷǢ ͳͻͻͺǢ Ǧ ϐ (cf. García-Mendoza et al. 2004). ǡ ǡ studies among taxonomic groups are not homogeneous: longer than others. Some of the main taxonomic groups ȋ ÀʹͲͲʹǢǦʹͲͲ͵ǢǦet al. -
Seriola Lalandi Dorsalis), Technological Advances Towards the Development of the Aquaculture Sector
Quantifying Digestion in California Yellowtail (Seriola lalandi dorsalis), Technological Advances Towards the Development of the Aquaculture Sector The Graduate Division The University of Hawai‘i at Hilo In Partial Fulfillment of the Requirements for the Degree of Master of Science: Tropical Conservation Biology and Environmental Science Hilo, Hawai’i December 2016 By: George Rod Parish IV Thesis Committee: Armando Garciaa Charles Farwellbc Luke Gardnerbd Kevin Hopkinsa Barbara Blockbd a Pacific Aquaculture & Coastal Resources Center, College of Agriculture, Forestry and Natural Resource Management, University of Hawaii at Hilo, 1079 Kalanianaole Ave., Hilo, HI 96720, United States b Tuna Research and Conservation Center, 886 Cannery Row, Monterey, CA 93940, USA c Monterey Bay Aquarium, 886 Cannery Row, Monterey, CA 93940, USA d Biology Department, Hopkins Marine Station, Stanford University, 120 Ocean View Blvd, Pacific Grove, CA 93950, USA Table of Contents Acknowledgements ......................................................................................................................... iv List Of Figures .................................................................................................................................. vi List Of Tables .................................................................................................................................. vii Chapter 1: Introduction ................................................................................................................. 1 I. Yellowtail -
61661147.Pdf
Resource Inventory of Marine and Estuarine Fishes of the West Coast and Alaska: A Checklist of North Pacific and Arctic Ocean Species from Baja California to the Alaska–Yukon Border OCS Study MMS 2005-030 and USGS/NBII 2005-001 Project Cooperation This research addressed an information need identified Milton S. Love by the USGS Western Fisheries Research Center and the Marine Science Institute University of California, Santa Barbara to the Department University of California of the Interior’s Minerals Management Service, Pacific Santa Barbara, CA 93106 OCS Region, Camarillo, California. The resource inventory [email protected] information was further supported by the USGS’s National www.id.ucsb.edu/lovelab Biological Information Infrastructure as part of its ongoing aquatic GAP project in Puget Sound, Washington. Catherine W. Mecklenburg T. Anthony Mecklenburg Report Availability Pt. Stephens Research Available for viewing and in PDF at: P. O. Box 210307 http://wfrc.usgs.gov Auke Bay, AK 99821 http://far.nbii.gov [email protected] http://www.id.ucsb.edu/lovelab Lyman K. Thorsteinson Printed copies available from: Western Fisheries Research Center Milton Love U. S. Geological Survey Marine Science Institute 6505 NE 65th St. University of California, Santa Barbara Seattle, WA 98115 Santa Barbara, CA 93106 [email protected] (805) 893-2935 June 2005 Lyman Thorsteinson Western Fisheries Research Center Much of the research was performed under a coopera- U. S. Geological Survey tive agreement between the USGS’s Western Fisheries -
Isolation of Novel Hepcidin Isoforms from the Rockbream Oplegnathus Fasciatus (Perciformes)
Fish Aqua Sci 14(1), 31-42, 2011 31 Isolation of Novel Hepcidin Isoforms from the Rockbream Oplegnathus fasciatus (Perciformes) Sang Yoon Lee and Yoon Kwon Nam* Department of Marine Bio-Materials and Aquaculture, Pukyong National University, Busan 608-737, Korea Three novel hepcidin isoforms were isolated and characterized from the perciform fish species Oplegnathus fasciatus. These hepcidin isoforms (designated rbhepc5, rbhepc6 and rbhepc7) were found to share a conserved, tripartite gene structure and a considerable sequence homology one another. A comparison of their mature peptide sequences with those of other perciform hepcidin orthologs indicated that these three hepcidin isoforms as well as four other isoforms previously identified in this species, appear to belong to the HAMP2 group of hepcidin genes. Analysis of the 5′-upstream sequences showed that the proximal non-coding regions of rbhepc5~7 do not possess canonical TATA signals; instead, they harbor several binding motifs for transcription factors involved in immune modulation. Reverse transcriptase-PCR analysis demonstrated that the rbhepc5~7 are expressed predominantly in the liver, and that the transcription of rbhepc5~7 is rapidly induced in the liver, but not in other tissues, by experimental challenge with any of three different bacterial species. However, transcription of rbhepc6 appeared to be negligible under both basal and stimulated conditions, as judged by the redundancy count of randomly chosen reverse transcriptase-PCR clones. Key words: Gene structure, Hepcidin -
The Evolution of the Immune System: Conservation and Diversification
Title The Evolution of the Immune System Conservation and Diversification Page left intentionally blank The Evolution of the Immune System Conservation and Diversification Davide Malagoli Department of Life Sciences Biology Building, University of Modena and Reggio Emilia, Modena, Italy AMSTERDAM • BOSTON • HEIDELBERG • LONDON NEW YORK • OXFORD • PARIS • SAN DIEGO SAN FRANCISCO • SINGAPORE • SYDNEY • TOKYO Academic Press is an imprint of Elsevier Academic Press is an imprint of Elsevier 125 London Wall, London EC2Y 5AS, United Kingdom 525 B Street, Suite 1800, San Diego, CA 92101-4495, United States 50 Hampshire Street, 5th Floor, Cambridge, MA 02139, United States The Boulevard, Langford Lane, Kidlington, Oxford OX5 1GB, UK Copyright © 2016 Elsevier Inc. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the publisher. Details on how to seek per- mission, further information about the Publisher’s permissions policies and our arrangements with organizations such as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our website: www.elsevier.com/permissions. This book and the individual contributions contained in it are protected under copyright by the Publisher (other than as may be noted herein). Notices Knowledge and best practice in this field are constantly changing. As new research and experience broaden our understanding, changes in research methods, professional practices, or medical treatment may become necessary. Practitioners and researchers must always rely on their own experience and knowledge in evaluating and using any information, methods, compounds, or experiments described herein. -
Osteology, Phylogeny, and Biogeography of the Marine Fish Family Ephippidae (Perciformes, Acanthuroidei), with Comments on Sister Group Relationships
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2000 Osteology, phylogeny, and biogeography of the marine fish family Ephippidae (Perciformes, Acanthuroidei), with comments on sister group relationships Martin Ray Cavalluzzi College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Fresh Water Studies Commons, Oceanography Commons, and the Zoology Commons Recommended Citation Cavalluzzi, Martin Ray, "Osteology, phylogeny, and biogeography of the marine fish family Ephippidae (Perciformes, Acanthuroidei), with comments on sister group relationships" (2000). Dissertations, Theses, and Masters Projects. Paper 1539616603. https://dx.doi.org/doi:10.25773/v5-pm7s-3q12 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. -
Karyotype Analysis and Ribosomal Gene Localization of Spotted Knifejaw Oplegnathus Punctatus
Karyotype analysis and ribosomal gene localization of spotted knifejaw Oplegnathus punctatus P.Z. Li, D.D. Cao, X.B. Liu, Y.J. Wang, H.Y. Yu, X.J. Li, Q.Q. Zhang and X.B. Wang Key Laboratory of Marine Genetics and Breeding, College of Marine Life Science, Ocean University of China, Ministry of Education, Qingdao, China Corresponding author: X.B. Wang E-Mail: [email protected] Genet. Mol. Res. 15 (4): gmr15049159 Received September 5, 2016 Accepted November 17, 2016 Published December 23, 2016 DOI http://dx.doi.org/10.4238/gmr15049159 Copyright © 2016 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution ShareAlike (CC BY-SA) 4.0 License. ABSTRACT. The spotted knifejaw, Oplegnathus punctatus, is an important aquaculture fish species in China. To better understand the chromosomal microstructure and the karyotypic origin of this species, cytogenetic analysis was performed using Giemsa staining to identify metaphase chromosomes, C-banding to detect C-positive heterochromatin, silver staining to identify the nucleolus organizer regions (Ag-NORs), and fluorescence in situ hybridization (FISH) for physical mapping of the major (18S rDNA) and minor (5S rDNA) ribosomal genes. The species showed a karyotype of 2n = 48 for females, composed of 2 submetacentric and 46 telocentric chromosomes, with a fundamental number (FN) = 50, while the karyotype of males was 2n = 47, composed of 1 exclusive large metacentric, 2 submetacentric, and 44 telocentric chromosomes, with FN = 50. These karyotype results Genetics and Molecular Research 15 (4): gmr15049159 P.Z. Li et al. 2 suggest that O.