Annotated Checklist of Marine Fishes from the Sanctuary of Bahía Chamela, Mexico with Occurrence and Biogeographic Data
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
Belonidae Bonaparte 1832 Needlefishes
ISSN 1545-150X California Academy of Sciences A N N O T A T E D C H E C K L I S T S O F F I S H E S Number 16 September 2003 Family Belonidae Bonaparte 1832 needlefishes By Bruce B. Collette National Marine Fisheries Service Systematics Laboratory National Museum of Natural History, Washington, DC 20560–0153, U.S.A. email: [email protected] Needlefishes are a relatively small family of beloniform fishes (Rosen and Parenti 1981 [ref. 5538], Collette et al. 1984 [ref. 11422]) that differ from other members of the order in having both the upper and the lower jaws extended into long beaks filled with sharp teeth (except in the neotenic Belonion), the third pair of upper pharyngeal bones separate, scales on the body relatively small, and no finlets following the dorsal and anal fins. The nostrils lie in a pit anterior to the eyes. There are no spines in the fins. The dorsal fin, with 11–43 rays, and anal fin, with 12–39 rays, are posterior in position; the pelvic fins, with 6 soft rays, are located in an abdominal position; and the pectoral fins are short, with 5–15 rays. The lateral line runs down from the pectoral fin origin and then along the ventral margin of the body. The scales are small, cycloid, and easily detached. Precaudal vertebrae number 33–65, caudal vertebrae 19–41, and total verte- brae 52–97. Some freshwater needlefishes reach only 6 or 7 cm (2.5 or 2.75 in) in total length while some marine species may attain 2 m (6.5 ft). -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Ecuador's Biodiversity Hotspots
Ecuador’s Biodiversity Hotspots Destination: Andes, Amazon & Galapagos Islands, Ecuador Duration: 19 Days Dates: 29th June – 17th July 2018 Exploring various habitats throughout the wonderful & diverse country of Ecuador Spotting a huge male Andean bear & watching as it ripped into & fed on bromeliads Watching a Eastern olingo climbing the cecropia from the decking in Wildsumaco Seeing ~200 species of bird including 33 species of dazzling hummingbirds Watching a Western Galapagos racer hunting, catching & eating a Marine iguana Incredible animals in the Galapagos including nesting flightless cormorants 36 mammal species including Lowland paca, Andean bear & Galapagos fur seals Watching the incredible and tiny Pygmy marmoset in the Amazon near Sacha Lodge Having very close views of 8 different Andean condors including 3 on the ground Having Galapagos sea lions come up & interact with us on the boat and snorkelling Tour Leader / Guides Overview Martin Royle (Royle Safaris Tour Leader) Gustavo (Andean Naturalist Guide) Day 1: Quito / Puembo Francisco (Antisana Reserve Guide) Milton (Cayambe Coca National Park Guide) ‘Campion’ (Wildsumaco Guide) Day 2: Antisana Wilmar (Shanshu), Alex and Erica (Amazonia Guides) Gustavo (Galapagos Islands Guide) Days 3-4: Cayambe Coca Participants Mr. Joe Boyer Days 5-6: Wildsumaco Mrs. Rhoda Boyer-Perkins Day 7: Quito / Puembo Days 8-10: Amazon Day 11: Quito / Puembo Days 12-18: Galapagos Day 19: Quito / Puembo Royle Safaris – 6 Greenhythe Rd, Heald Green, Cheshire, SK8 3NS – 0845 226 8259 – [email protected] Day by Day Breakdown Overview Ecuador may be a small country on a map, but it is one of the richest countries in the world in terms of life and biodiversity. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
A List of Common and Scientific Names of Fishes from the United States And
t a AMERICAN FISHERIES SOCIETY QL 614 .A43 V.2 .A 4-3 AMERICAN FISHERIES SOCIETY Special Publication No. 2 A List of Common and Scientific Names of Fishes -^ ru from the United States m CD and Canada (SECOND EDITION) A/^Ssrf>* '-^\ —---^ Report of the Committee on Names of Fishes, Presented at the Ei^ty-ninth Annual Meeting, Clearwater, Florida, September 16-18, 1959 Reeve M. Bailey, Chairman Ernest A. Lachner, C. C. Lindsey, C. Richard Robins Phil M. Roedel, W. B. Scott, Loren P. Woods Ann Arbor, Michigan • 1960 Copies of this publication may be purchased for $1.00 each (paper cover) or $2.00 (cloth cover). Orders, accompanied by remittance payable to the American Fisheries Society, should be addressed to E. A. Seaman, Secretary-Treasurer, American Fisheries Society, Box 483, McLean, Virginia. Copyright 1960 American Fisheries Society Printed by Waverly Press, Inc. Baltimore, Maryland lutroduction This second list of the names of fishes of The shore fishes from Greenland, eastern the United States and Canada is not sim- Canada and the United States, and the ply a reprinting with corrections, but con- northern Gulf of Mexico to the mouth of stitutes a major revision and enlargement. the Rio Grande are included, but those The earlier list, published in 1948 as Special from Iceland, Bermuda, the Bahamas, Cuba Publication No. 1 of the American Fisheries and the other West Indian islands, and Society, has been widely used and has Mexico are excluded unless they occur also contributed substantially toward its goal of in the region covered. In the Pacific, the achieving uniformity and avoiding confusion area treated includes that part of the conti- in nomenclature. -
APORTACION5.Pdf
Ⓒ del autor: Domingo Lloris Ⓒ mayo 2007, Generalitat de Catalunya Departament d'Agricultura, Alimentació i Acció Rural, per aquesta primera edició Diseño y producción: Dsignum, estudi gràfic, s.l. Coordinación: Lourdes Porta ISBN: Depósito legal: B-16457-2007 Foto página anterior: Reconstrucción de las mandíbulas de un Megalodonte (Carcharocles megalodon) GLOSARIO ILUSTRADO DE ICTIOLOGÍA PARA EL MUNDO HISPANOHABLANTE Acuariología, Acuarismo, Acuicultura, Anatomía, Autoecología, Biocenología, Biodiver- sidad, Biogeografía, Biología, Biología evolutiva, Biología conservativa, Biología mole- cular, Biología pesquera, Biometría, Biotecnología, Botánica marina, Caza submarina, Clasificación, Climatología, Comercialización, Coro logía, Cromatismo, Ecología, Ecolo- gía trófica, Embriología, Endocri nología, Epizootiología, Estadística, Fenología, Filoge- nia, Física, Fisiología, Genética, Genómica, Geografía, Geología, Gestión ambiental, Hematología, Histolo gía, Ictiología, Ictionimia, Merística, Meteorología, Morfología, Navegación, Nomen clatura, Oceanografía, Organología, Paleontología, Patología, Pesca comercial, Pesca recreativa, Piscicultura, Química, Reproducción, Siste mática, Taxono- mía, Técnicas pesqueras, Teoría del muestreo, Trofismo, Zooar queología, Zoología. D. Lloris Doctor en Ciencias Biológicas Ictiólogo del Instituto de Ciencias del Mar (CSIC) Barcelona PRÓLOGO En mi ya lejana época universitaria se estudiaba mediante apuntes recogidos en las aulas y, más tarde, según el interés transmitido por el profesor y la avidez de conocimiento del alumno, se ampliaban con extractos procedentes de diversos libros de consulta. Así descubrí que, mientras en algunas disciplinas resultaba fácil encontrar obras en una lengua autóctona o traducida, en otras brillaban por su ausen- cia. He de admitir que el hecho me impresionó, pues ponía al descubierto toda una serie de oscuras caren- cias que marcaron un propósito a seguir en la disciplina que me ha ocupado durante treinta años: la ictiología. -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
Pondella CV 2019
CURRICULUM VITAE DANIEL J. PONDELLA II EDUCATION Ph.D. in Biology, 2001, University of California, Los Angeles M.A. in Biology, 1992, Occidental College A.B. in Biology and Philosophy, 1987, Occidental College POSITIONS At Occidental College since 1988, Professor, 2017-present Director, Vantuna Research Group, 1996-present Biology Department Chair, 2012-2018 Associate Professor, 2010-2016 Assistant Professor, 2005-2010 Adjunct Professor, 2003-2005 Administrative Director of the Moore Laboratory of Zoology, 2010-2011 Faculty Athletic Representative and Chair of SCIAC Athletics Committee, 2007-2011 Dive Safety Officer, 1989-2011 Instructor of Summer Oceanology Program, 1992-2003 Acting Director, Vantuna Research Group, 1995-1996 Associate Director, Vantuna Research Group, 1994-1995 Research Associate, Vantuna Research Group, 1988-1994 Teaching Assistant, 1988-93 Director Southern California Marine Institute (SCMI), 2012-present SCMI Board of Directors, 2008-present, President 2009-2012. Ocean Studies Institute (OSI) Board of Directors and Dive Control Board, 2012-present AltaSea Advisory Cabinet, 2013-2014 Southern California Academy of Sciences, Board of Directors, 1998-present, President 2000-02 Editor, Bulletin of the Southern California Academy of Sciences, 2010-present Santa Monica Bay Restoration Commission, Technical Advisory Committee, 2002-present Chair-Marine Resources Advisory Committee, 2007-present East San Pedro Bay Technical Advisory Committee, 2016-present Master Plan Science Advisory Team for the South Coast Study Region, -
En Guaymas, Sonora, Durante L
BYCATCH OF THE ARTISANAL SHRIMP FISHERY IN THE GULF OF CALIFORNIA (SONORA AND SINALOA) MEXICO Report prepared by Alejandro Balmori Ramírez (INAPESCA, CRIP-Guaymas) and Rufino Morales Azpeitia (CIBNOR-Unidad Guaymas), in collaboration with Everardo Miranda Mier and Jesús Guadalupe Padilla Serrato. Guaymas, Sonora, México. June 2012 Summary One of the most important fishing resources in Mexico is shrimp, this is due to its high economic and social value. Nonetheless, many non-target species are captured incidentally during shrimp-fishing activities, and grouped as faunal companions or shrimp bycatch (SBC). Most of the SBC species have not been studied and the impact of this fishery upon them is yet unknown. This document presents the results of a study on the artisanal shrimp fisheries’ bycatch within the bays of Guaymas, Bahía de Lobos, and El Tóbari, in the State of Sonora; and in Santa Maria La Reforma in the State of Sinaloa, during the 2011–2012 shrimp fishing season. The study collected shrimp and SBC samples, identified the organisms to the species level, and recorded biological sampling (biometrics). Logbook data and sampling information was captured in a database. We documented 854 fishing hauls for all of the bays. SBC analysis shows a total composition of 46 identified species belonging to different taxonomic groups such as fishes, crustaceans, gastropods, and elasmobranchs, and an additional 10 species identified to the genus level only. The most diverse group was that of bony fishes and the most dominant species was the swimming crab (Callinectes spp.). The amount of SBC species varied spatially (lagoon system). During the shrimping activity, a high percentage (20-30%) of negative fishing hauls (i.e., without any SBC captures) was recorded, indicating that the artisanal shrimp fishery does not generate any bycatch in a third of all fishing hauls. -
Guide to the Coastal Marine Fishes of California
STATE OF CALIFORNIA THE RESOURCES AGENCY DEPARTMENT OF FISH AND GAME FISH BULLETIN 157 GUIDE TO THE COASTAL MARINE FISHES OF CALIFORNIA by DANIEL J. MILLER and ROBERT N. LEA Marine Resources Region 1972 ABSTRACT This is a comprehensive identification guide encompassing all shallow marine fishes within California waters. Geographic range limits, maximum size, depth range, a brief color description, and some meristic counts including, if available: fin ray counts, lateral line pores, lateral line scales, gill rakers, and vertebrae are given. Body proportions and shapes are used in the keys and a state- ment concerning the rarity or commonness in California is given for each species. In all, 554 species are described. Three of these have not been re- corded or confirmed as occurring in California waters but are included since they are apt to appear. The remainder have been recorded as occurring in an area between the Mexican and Oregon borders and offshore to at least 50 miles. Five of California species as yet have not been named or described, and ichthyologists studying these new forms have given information on identification to enable inclusion here. A dichotomous key to 144 families includes an outline figure of a repre- sentative for all but two families. Keys are presented for all larger families, and diagnostic features are pointed out on most of the figures. Illustrations are presented for all but eight species. Of the 554 species, 439 are found primarily in depths less than 400 ft., 48 are meso- or bathypelagic species, and 67 are deepwater bottom dwelling forms rarely taken in less than 400 ft.