Anemones, Form Associations with Several Invertebrates Such As Cleaner Shrimps (Limbaugh Et Al
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Symbiodinium Diversity and Potential Hybridisation on the Highly Biodiverse Coral Reefs of Timor-Leste
Symbiodinium diversity and potential hybridisation on the highly biodiverse coral reefs of Timor-Leste Joshua Ian Brian A thesis submitted to the Victoria University of Wellington in partial fulfilment of the requirements for the degree of Master of Science in Marine Biology Victoria University of Wellington, New Zealand 2018 Atauro Island, Timor-Leste ii Abstract To persist in oligotrophic waters, reef-building corals rely on nutritional interactions with their intracellular symbionts: photosynthetic dinoflagellates of the genus Symbiodinium. This relationship is threatened by increasing environmental stress, which can stimulate loss of these symbionts from coral tissues (‘coral bleaching’). Members of the genus Symbiodinium display high levels of genetic diversity, and demonstrate a corresponding diversity in physiological responses to environmental change. However, the true diversity and potential for genetic adaptation in this genus remain poorly characterised. This thesis aimed to further the understanding of symbiont diversity and adaptive potential by conducting assessments of Symbiodinium at Atauro Island and the neighbouring Timor-Leste mainland. These sites have previously been shown to be of outstanding conservation value, with extremely high levels of coral diversity. Atauro Island also possibly hosts the highest diversity of reef fish in the world. However, the Symbiodinium communities at these sites have never been assessed. Two specific objectives were therefore addressed here. The first was to measure Symbiodinium diversity at Atauro Island (four sites) and Timor (three sites), using direct sequencing of three gene regions: cob gene, mitochondrion; ITS2 region, nucleus; and psbAncr region, chloroplast; in addition to Next Generation Sequencing of the ITS2 region. The second objective was to establish evidence for Symbiodinium hybridisation, a potentially rapid evolutionary mechanism that may facilitate adaptation to environmental stress, by looking for genetic incongruences between Symbiodinium organelles. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
Variable Holocene Deformation Above a Shallow Subduction Zone Extremely Close to the Trench
ARTICLE Received 24 Nov 2014 | Accepted 22 May 2015 | Published 30 Jun 2015 DOI: 10.1038/ncomms8607 OPEN Variable Holocene deformation above a shallow subduction zone extremely close to the trench Kaustubh Thirumalai1,2, Frederick W. Taylor1, Chuan-Chou Shen3, Luc L. Lavier1,2, Cliff Frohlich1, Laura M. Wallace1, Chung-Che Wu3, Hailong Sun3,4 & Alison K. Papabatu5 Histories of vertical crustal motions at convergent margins offer fundamental insights into the relationship between interplate slip and permanent deformation. Moreover, past abrupt motions are proxies for potential tsunamigenic earthquakes and benefit hazard assessment. Well-dated records are required to understand the relationship between past earthquakes and Holocene vertical deformation. Here we measure elevations and 230Th ages of in situ corals raised above the sea level in the western Solomon Islands to build an uplift event history overlying the seismogenic zone, extremely close to the trench (4–40 km). We find marked spatiotemporal heterogeneity in uplift from mid-Holocene to present: some areas accrue more permanent uplift than others. Thus, uplift imposed during the 1 April 2007 Mw 8.1 event may be retained in some locations but removed in others before the next megathrust rupture. This variability suggests significant changes in strain accumulation and the interplate thrust process from one event to the next. 1 Institute for Geophysics, Jackson School of Geosciences, University of Texas at Austin, J. J. Pickle Research Campus, Building 196, 10100 Burnet Road (R2200), Austin, Texas 78758, USA. 2 Department of Geological Sciences, Jackson School of Geosciences, University of Texas at Austin, 1 University Station C9000, Austin, Texas 78712, USA. -
FWC Sentinel Site Report June 2018
Investigating the Ongoing Coral Disease Outbreak in the Florida Keys: Collecting Corals to Diagnose the Etiological Agent(s) and Establishing Sentinel Sites to Monitor Transmission Rates and the Spatial Progression of the Disease. Florida Department of Environmental Protection Award Final Report FWC: FWRI File Code: F4364-18-18-F William Sharp & Kerry Maxwell Florida Fish & Wildlife Conservation Commission Fish & Wildlife Research Institute June 25, 2018 Project Title: Investigating the ongoing coral disease outbreak in the Florida Keys: collecting corals to diagnose the etiological agent(s) and establishing sentinel sites to monitor transmission rates and the spatial progression of the disease. Principal Investigators: William C. Sharp and Kerry E. Maxwell Florida Fish & Wildlife Conservation Commission Fish & Wildlife Research Institute 2796 Overseas Hwy., Suite 119 Marathon FL 33050 Project Period: 15 January 2018 – 30 June 2018 Reporting Period: 21 April 2018 – 15 June 2018 Background: Disease is recognized as a major cause of the progressive decline in reef-building corals that has contributed to the general decline in coral reef ecosystems worldwide (Jackson et al. 2014; Hughes et al. 2017). The first reports of coral disease in the Florida Keys emerged in the 1970’s and numerous diseases have been documented with increasing frequency (e.g., Porter et al., 2001). Presently, the Florida Reef Tract (FRT) is experiencing one of the most widespread and virulent disease outbreaks on record. This outbreak has resulted in the mortality of thousands of colonies of at least 20 species of scleractinian coral, including primary reef builders and species listed as Threatened under the Endangered Species Act. -
III. Species Richness and Benthic Cover
2009 Quick Look Report: Miller et al. III. Species Richness and Benthic Cover Background The most species-rich marine communities probably occur on coral reefs and this pattern is at least partly due to the diversity of available habitats and the degree to which species are ecologically restricted to particular niches. Coral reefs in the Indo-Pacific and Caribbean in particular are usually thought to hold the greatest diversity of marine life at several levels of biological diversity. Diversity on coral reefs is strongly influenced by environmental conditions and geographic location, and variations in diversity can be correlated with differences in reef structure. For example, shallow and mid-depth fore-reef habitats in the Caribbean were historically dominated by largely mono-specific zones of just two Acropora species, while the Indo-Pacific has a much greater number of coral species and growth forms. Coral reefs are in a state of decline worldwide from multiple stressors, including physical impacts to habitat, changes in water quality, overfishing, disease outbreaks, and climate change. Coral reefs in a degraded state are often characterized by one or more signs, including low abundances of top-level predators, herbivores, and reef-building corals, but higher abundances of non-hermatypic organisms such as seaweeds. For the Florida Keys, there is little doubt that areas historically dominated by Acropora corals, particularly the shallow (< 6 m) and deeper (8-15 m) fore reef, have changed substantially, largely due to Caribbean-wide disease events and bleaching. However, debate continues regarding other causes of coral reef decline, thus often making it difficult for resource managers to determine which courses of action to take to minimize localized threats in lieu of larger-scale factors such as climate change. -
The Sunshine State
1 The Sunshine State Visitors driving into Florida pass signs that offer a greeting and men- tion the weather they may expect: “Welcome to Florida—The Sunshine State.” It is the sunshine that lures so many people to Florida. Florida has been officially known as the Sunshine State since 1970, but other nicknames include the Peninsula State, the Everglades State, the Alliga- tor State, and the Orange State. Florida is the land of sunshine, beaches, theme parks, wildlife, and much more. Florida’s warm, sunnyproof weather has created a population of tourists, retirees, refugees from the cold North, and visitors from overseas, but Florida’s weather isn’t always warm and sunny. Every Floridian knows to expect rumbling thunderstorms arising from the hot and humid air lifted by sea breezes that sometimes turn violent during summer after- noons. These storms, which are sometimes deadly, throw out bolts of lightning like the Greek god Thor, striking whomever may be in their path. At times the weather is hot and dry for months, as Floridians all over the state saw in 1998 when the parched land ignited into wildfires. Thick smoke from fires at night clings close to the ground and mixes with fog, creating a deadly mix when it drifts over roadways. During the winter, Arctic air masses originating in Siberia migrate across the dark and frozen northlands to Alaska and Canada and plunge southward, bringing a frigid chill to Florida. Snow is not on the mind of most Flo- ridians unless they are headed to the ski slopes or hear news of a bliz- zard up north. -
Modeling Larval Connectivity Among Coral Habitats, Acropora Palmata
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 2007 Modeling larval connectivity among coral habitats, Acropora palmata populations, and marine protected areas in the Florida Keys National Marine Sanctuary Christopher John Higham University of South Florida Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the American Studies Commons Scholar Commons Citation Higham, Christopher John, "Modeling larval connectivity among coral habitats, Acropora palmata populations, and marine protected areas in the Florida Keys National Marine Sanctuary" (2007). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/2213 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Modeling Larval Connectivity among Coral Habitats, Acropora palmata Populations, and Marine Protected Areas in the Florida Keys National Marine Sanctuary by Christopher John Higham A thesis submitted in partial fulfillment of the requirements for the degree of Master of Arts Department of Geography College of Arts and Sciences University of South Florida Major Professor: Paul Zandbergen, Ph.D. Jayajit Chakraborty, Ph.D. Susan Bell, Ph.D. Data of Approval: April 10, 2007 Keywords: GIS, ArcGIS, TauDEM, D∞ flow routing, ocean currents, flow direction, contributing flow, upstream -
1 Updated Through January 27, 2016 NOTE: the FOLLOWING IS an UNOFFICIAL COMPILATION of FEDERAL REGULATIONS PREPARED in the SOUTH
Updated through January 27, 2016 NOTE: THE FOLLOWING IS AN UNOFFICIAL COMPILATION OF FEDERAL REGULATIONS PREPARED IN THE SOUTHEAST REGIONAL OFFICE OF THE NATIONAL MARINE FISHERIES SERVICE FOR THE INFORMATION AND CONVENIENCE OF INTERESTED PERSONS. IT DOES NOT INCLUDE CHANGES TO THESE REGULATIONS THAT MAY HAVE OCCURRED AFTER THE DATE INDICATED ABOVE. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration (NOAA) National Marine Fisheries Service (NMFS) 50 CFR Part 622 PART 622--FISHERIES OF THE CARIBBEAN, GULF OF MEXICO, AND SOUTH ATLANTIC TABLE OF CONTENTS Subpart A--General Provisions.................................. 8 § 622.1 Purpose and scope. ................................... 8 § 622.2 Definitions and acronyms ............................ 10 § 622.3 Relation to other laws and regulations .............. 20 § 622.4 Permits and fees--general ........................... 21 § 622.5 Recordkeeping and reporting--general ................ 25 § 622.6 Vessel identification ............................... 27 § 622.7 Fishing years ....................................... 28 § 622.8 Quotas--general ..................................... 29 § 622.9 Prohibited gear and methods--general ................ 30 § 622.10 Landing fish intact--general ....................... 31 § 622.11 Bag and possession limits--general applicability ... 32 § 622.12 Annual catch limits (ACLs) and accountability measures (AMs) for Caribbean island management areas/Caribbean EEZ ... 32 § 622.13 Prohibitions--general .............................. 35 § 622.14 -
Bookletchart™ Florida Keys – Sombrero Key to Dry Tortugas NOAA Chart 11434
BookletChart™ Florida Keys – Sombrero Key to Dry Tortugas NOAA Chart 11434 A reduced-scale NOAA nautical chart for small boaters When possible, use the full-size NOAA chart for navigation. Published by the Currents are variable along the edge of the reefs, being influenced by winds, by differences of barometric pressure in the Gulf and the Straits National Oceanic and Atmospheric Administration of Florida, and by the tides. At times there are strong tidal currents National Ocean Service through the passages between the keys. Office of Coast Survey Between Key West Harbor and Boca Grande Channel there is an extensive shoal area in which are several small scattered keys. The white www.NauticalCharts.NOAA.gov sand beaches of the southernmost keys are easily discernible from 888-990-NOAA seaward. A large house on Ballast Key (24°31.3'N., 81°57.8'W.) is reported to be prominent. What are Nautical Charts? A small-craft channel, marked by private daybeacons, extends through the shoal area from Key West to the N side of Boca Grande Key. The Nautical charts are a fundamental tool of marine navigation. They show channel has a reported controlling depth of 5 feet except S of Mule Key, water depths, obstructions, buoys, other aids to navigation, and much near Key West, where the controlling depth is 2 feet. Local knowledge is more. The information is shown in a way that promotes safe and advised. In 2009, unexploded ordinance was reported about ½ mile N of efficient navigation. Chart carriage is mandatory on the commercial Boca Grande Key within a 200 yard radius of a visible wreck at ships that carry America’s commerce. -
Tortugas Ecological Reserve
Strategy for Stewardship Tortugas Ecological Reserve U.S. Department of Commerce DraftSupplemental National Oceanic and Atmospheric Administration Environmental National Ocean Service ImpactStatement/ Office of Ocean and Coastal Resource Management DraftSupplemental Marine Sanctuaries Division ManagementPlan EXECUTIVE SUMMARY The Florida Keys National Marine Sanctuary (FKNMS), working in cooperation with the State of Florida, the Gulf of Mexico Fishery Management Council, and the National Marine Fisheries Service, proposes to establish a 151 square nautical mile “no- take” ecological reserve to protect the critical coral reef ecosystem of the Tortugas, a remote area in the western part of the Florida Keys National Marine Sanctuary. The reserve would consist of two sections, Tortugas North and Tortugas South, and would require an expansion of Sanctuary boundaries to protect important coral reef resources in the areas of Sherwood Forest and Riley’s Hump. An ecological reserve in the Tortugas will preserve the richness of species and health of fish stocks in the Tortugas and throughout the Florida Keys, helping to ensure the stability of commercial and recreational fisheries. The reserve will protect important spawning areas for snapper and grouper, as well as valuable deepwater habitat for other commercial species. Restrictions on vessel discharge and anchoring will protect water quality and habitat complexity. The proposed reserve’s geographical isolation will help scientists distinguish between natural and human-caused changes to the coral reef environment. Protecting Ocean Wilderness Creating an ecological reserve in the Tortugas will protect some of the most productive and unique marine resources of the Sanctuary. Because of its remote location 70 miles west of Key West and more than 140 miles from mainland Florida, the Tortugas region has the best water quality in the Sanctuary. -
Bonefish & Tarpon Journal
INSIDE: FLORIDA KEYS SANCTUARY PLAN • BAHAMAS HURRICANE RECOVERY • CUBAN COLLABORATION A publication of BONEFISH & TARPON JournalCONSERVATION THROUGH SCIENCE • SPRING 2020 B O N E F I S H & T A R P O N J O U R N A L S P R I N G 2 0 2 0 W W W. B T T. O R G 1 Editorial Board A publication of BONEFISH & TARPON Dr. Aaron Adams, Harold Brewer, Bill Horn, Jim McDuffie Publication TeamA publication of Publishers: Harold Brewer, Jim McDuffie ManagingBONEFISH Editor: & TARPON Alex Lovett-Woodsum STEWARDSHIP THROUGH SCIENCE • SPRING 2017 Consulting Editors: Bob Baal, Nick Roberts Board of DirectorsJournal JournalLayout and Design: Scott Morrison, Officers ! ... Morrison Creative Company Features: Updates/Reports: Oh The Places They Take You AdvertisingEditorial Coordinator: Board Mark Rehbein Harold Brewer, Chairman of the Board, Key Largo, Florida TheBill Florida Horn, ViceKeys Chairman Initiative ............................................. of the Board, Marathon, Florida12 Setting the Hook ...........................................4 Dr. Aaron Adams, Harold Brewer, Fix Our Water ..................................................................14 Changing of the Guard .................................6 Sarah Cart,Photography Bill Horn, Jim McDuffie Jim McDuffie, President & CEO, Coral Gables, Florida Cover: Tosh Brown TarponTom Davidson, Genetics: ChairmanConnectivity Emeritus, Across theKey Atlantic Largo, Florida ....18 Perspectives ..................................................8 PublicationAaron Adams Team BonefishRuss Fisher, Conservation -
Distribution of Clionid Sponges in the Florida Keys National Marine Sanctuary (FKNMS), 2001-2003
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 2005 Distribution of Clionid Sponges in the Florida Keys National Marine Sanctuary (FKNMS), 2001-2003 Michael K. Callahan University of South Florida Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the American Studies Commons Scholar Commons Citation Callahan, Michael K., "Distribution of Clionid Sponges in the Florida Keys National Marine Sanctuary (FKNMS), 2001-2003" (2005). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/2803 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Distribution of Clionid Sponges in the Florida Keys National Marine Sanctuary (FKNMS), 2001-2003 by Michael K. Callahan A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Department of Biological Oceanography College of Marine Science University of South Florida Major Professor: Pamela Hallock Muller, Ph.D. Carl R. Beaver, Ph.D. Walter C. Jaap, B.S. Kendra L. Daly, Ph.D. Date of Approval: March 28, 2005 Keywords: Bioerosion, Cliona delitrix, Coral Reefs, Monitoring © Copyright 2005, Michael K. Callahan AKNOWLEDGEMENTS First and foremost I would like to thank my major professor, Dr. Pamela Hallock Muller for her tireless effort and patience. I would also like to thank and acknowledge my committee members Dr. Carl Beaver, Walter Jaap, and Dr. Kendra Daly and the entire CREMP research team for their help and guidance.