Trans-Plasma Membrane Electron Transport System in the Myelin Membrane
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Elevated Hydrogen Peroxide and Decreased Catalase and Glutathione
Sullivan-Gunn and Lewandowski BMC Geriatrics 2013, 13:104 http://www.biomedcentral.com/1471-2318/13/104 RESEARCH ARTICLE Open Access Elevated hydrogen peroxide and decreased catalase and glutathione peroxidase protection are associated with aging sarcopenia Melanie J Sullivan-Gunn1 and Paul A Lewandowski2* Abstract Background: Sarcopenia is the progressive loss of skeletal muscle that contributes to the decline in physical function during aging. A higher level of oxidative stress has been implicated in aging sarcopenia. The current study aims to determine if the higher level of oxidative stress is a result of increased superoxide (O2‾ ) production by the NADPH oxidase (NOX) enzyme or decrease in endogenous antioxidant enzyme protection. Methods: Female Balb/c mice were assigned to 4 age groups; 6, 12, 18 and 24 months. Body weight and animal survival rates were recorded over the course of the study. Skeletal muscle tissues were collected and used to measure NOX subunit mRNA, O2‾ levels and antioxidant enzymes. Results: Key subunit components of NOX expression were elevated in skeletal muscle at 18 months, when sarcopenia was first evident. Increased superoxide dismutase 1 (SOD1) activity suggests an increase in O2‾ dismutation and this was further supported by elevated levels of hydrogen peroxide (H2O2) and decline in catalase and glutathione peroxidase (GPx) antioxidant protection in skeletal muscle at this time. NOX expression was also higher in skeletal muscle at 24 months, however this was coupled with elevated levels of O2‾ and a decline in SOD1 activity, compared to 6 and 12 months but was not associated with further loss of muscle mass. -
In Vitro Treatment of Hepg2 Cells with Saturated Fatty Acids Reproduces
© 2015. Published by The Company of Biologists Ltd | Disease Models & Mechanisms (2015) 8, 183-191 doi:10.1242/dmm.018234 RESEARCH ARTICLE In vitro treatment of HepG2 cells with saturated fatty acids reproduces mitochondrial dysfunction found in nonalcoholic steatohepatitis Inmaculada García-Ruiz1,*, Pablo Solís-Muñoz2, Daniel Fernández-Moreira3, Teresa Muñoz-Yagüe1 and José A. Solís-Herruzo1 ABSTRACT INTRODUCTION Activity of the oxidative phosphorylation system (OXPHOS) is Nonalcoholic fatty liver disease (NAFLD) represents a spectrum of decreased in humans and mice with nonalcoholic steatohepatitis. liver diseases extending from pure fatty liver through nonalcoholic Nitro-oxidative stress seems to be involved in its pathogenesis. The steatohepatitis (NASH) to cirrhosis and hepatocarcinoma that occurs aim of this study was to determine whether fatty acids are implicated in individuals who do not consume a significant amount of alcohol in the pathogenesis of this mitochondrial defect. In HepG2 cells, we (Matteoni et al., 1999). Although the pathogenesis of NAFLD analyzed the effect of saturated (palmitic and stearic acids) and remains undefined, the so-called ‘two hits’ model of pathogenesis monounsaturated (oleic acid) fatty acids on: OXPHOS activity; levels has been proposed (Day and James, 1998). Whereas the ‘first hit’ of protein expression of OXPHOS complexes and their subunits; gene involves the accumulation of fat in the liver, the ‘second hit’ expression and half-life of OXPHOS complexes; nitro-oxidative stress; includes oxidative stress resulting in inflammation, stellate cell and NADPH oxidase gene expression and activity. We also studied the activation, fibrogenesis and progression of NAFLD to NASH effects of inhibiting or silencing NADPH oxidase on the palmitic-acid- (Chitturi and Farrell, 2001). -
ARS-2014-6136-Ver9-Huang 6P 973..984
ANTIOXIDANTS & REDOX SIGNALING Volume 23, Number 12, 2015 DOI: 10.1089/ars.2014.6136 ORIGINAL RESEARCH COMMUNICATION Redox Regulation of Pro-IL-1b Processing May Contribute to the Increased Severity of Serum-Induced Arthritis in NOX2-Deficient Mice Ya-Fang Huang,1 Pei-Chi Lo,1 Chia-Liang Yen,2 Peter Andrija Nigrovic,3,4 Wen-Chen Chao,1,5 Wei-Zhi Wang,1 George Chengkang Hsu,1 Yau-Sheng Tsai,1 and Chi-Chang Shieh1,6 Abstract Aims: To elucidate the role of reactive oxygen species (ROS) in arthritis and to identify targets of arthritis treatment in conditions with different levels of oxidant stress. Results: Through establishing an arthritis model by injecting arthritogenic serum into wild-type and NADPH oxidase 2 (NOX2)-deficient mice, we found that arthritis had a neutrophilic infiltrate and was more severe in Ncf1 - / - mice, a mouse strain lacking the expression of the NCF1/p47phox component of NOX2. The levels of interleukin-1b (IL-1b) and IL-6 in inflamed joints were higher in Ncf1 - / - than in controls. Antagonists of tumor necrosis factor-a (TNFa) and IL-1b were equally effective in suppressing arthritis in wild-type mice, while IL-1b blockade was more effective than TNFa blockade in Ncf1 - / - mice. A treatment of caspase inhibitor and the combination treatment of a caspase inhibitor and a cathepsin inhibitor, but not a cathepsin inhibitor alone, suppressed arthritic severity in the wild-type mice, while a treatment of cathepsin inhibitor and the combination treatment of a caspase inhibitor and a cathepsin inhibitor, but not a caspase inhibitor alone, were effective in treating Ncf1 - / - mice. -
Cytochrome P450 Enzymes but Not NADPH Oxidases Are the Source of the MARK NADPH-Dependent Lucigenin Chemiluminescence in Membrane Assays
Free Radical Biology and Medicine 102 (2017) 57–66 Contents lists available at ScienceDirect Free Radical Biology and Medicine journal homepage: www.elsevier.com/locate/freeradbiomed Cytochrome P450 enzymes but not NADPH oxidases are the source of the MARK NADPH-dependent lucigenin chemiluminescence in membrane assays Flávia Rezendea, Kim-Kristin Priora, Oliver Löwea, Ilka Wittigb, Valentina Streckerb, Franziska Molla, Valeska Helfingera, Frank Schnütgenc, Nina Kurrlec, Frank Wempec, Maria Waltera, Sven Zukunftd, Bert Luckd, Ingrid Flemingd, Norbert Weissmanne, ⁎ ⁎ Ralf P. Brandesa, , Katrin Schrödera, a Institute for Cardiovascular Physiology, Goethe-University, Frankfurt, Germany b Functional Proteomics, SFB 815 Core Unit, Goethe-Universität, Frankfurt, Germany c Institute for Molecular Hematology, Goethe-University, Frankfurt, Germany d Institute for Vascular Signaling, Goethe-University, Frankfurt, Germany e University of Giessen, Lung Center, Giessen, Germany ARTICLE INFO ABSTRACT Keywords: Measuring NADPH oxidase (Nox)-derived reactive oxygen species (ROS) in living tissues and cells is a constant NADPH oxidase challenge. All probes available display limitations regarding sensitivity, specificity or demand highly specialized Nox detection techniques. In search for a presumably easy, versatile, sensitive and specific technique, numerous Lucigenin studies have used NADPH-stimulated assays in membrane fractions which have been suggested to reflect Nox Chemiluminescence activity. However, we previously found an unaltered activity with these assays in triple Nox knockout mouse Superoxide (Nox1-Nox2-Nox4-/-) tissue and cells compared to wild type. Moreover, the high ROS production of intact cells Reactive oxygen species Membrane assays overexpressing Nox enzymes could not be recapitulated in NADPH-stimulated membrane assays. Thus, the signal obtained in these assays has to derive from a source other than NADPH oxidases. -
Original Article Extracellular-Vesicles Derived from Human Wharton-Jelly Mesenchymal Stromal Cells Ameliorated Cyclosporin A-Induced Renal Fibrosis in Rats
Int J Clin Exp Med 2019;12(7):8943-8949 www.ijcem.com /ISSN:1940-5901/IJCEM0091514 Original Article Extracellular-vesicles derived from human Wharton-Jelly mesenchymal stromal cells ameliorated cyclosporin A-induced renal fibrosis in rats Guangyuan Zhang1, Shuyang Yu3, Si Sun1, Lei Zhang1, Guangli Zhang4, Kai Xu1, Yuxiao Zheng1,2, Qin Xue4, Ming Chen1 1Department of Urology, Zhongda Hospital, Southeast University, Nanjing 210009, China; 2Department of Urologic Surgery, Jiangsu Cancer Hospital & Jiangsu Institute of Cancer Research & Affiliated Cancer Hospital of Nanjing Medical University, Nanjing 210009, China; 3Department of Radiology, Dezhou United Hospital, Dezhou 253017, Shandong, China; 4Department of Nephrology, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai 200233, China Received January 19, 2019; Accepted April 11, 2019; Epub July 15, 2019; Published July 30, 2019 Abstract: Objective: To observe the therapeutic effects of human Wharton-Jelly mesenchymal stromal cells derived extracellular vesicles (MSCs-EVs) for cyclosporin-A-induced renal injury in rats and further to investigate the mecha- nism. Methods: EVs from MSCs were made using the ultra-centrifugation method. The cyclosporin A-induced renal injury model in rats was set up, and MSCs-EVs were administrated at d7 and d21 intravenously. The animals were sacrificed at d28, and the serum and kidneys were obtained. Renal fibrosis was assessed using Masson’s staining and α-SMA IHC staining. Renal function was determined using serum creatinine. The SOD and malondialdehyde (MDA) in the renal tissues were also assayed. In vitro, HK2 cells were injured by CsA for 24 h as well as incubated with MSCs-EVs administration, and ROS and α-SMA expression were assessed. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
And Detoxification (Benzola]Pyrene Quinones/Oxygen Radicals/NADPH-Cytochrome P-450 Reductase) PAUL L
Proc. Nati. Acad. Sci. USA Vol. 81, pp. 1696-1700, March 1984 Biochemistry Mutagenicity of quinones: Pathways of metabolic activation and detoxification (benzola]pyrene quinones/oxygen radicals/NADPH-cytochrome P-450 reductase) PAUL L. CHESIS*, DAVID E. LEVIN*, MARTYN T. SMITHt, LARS ERNSTERt, AND BRUCE N. AMES* Departments of *Biochemistry and tBiomedical and Environmental Health Sciences, School of Public Health, University of California, Berkeley, CA 94720; and tDepartment of Biochemistry, Arrhenius Laboratory, University of Stockholm, S-10691 Stockholm, Sweden Contributed by Bruce N. Ames, December 12, 1983 ABSTRACT The mutagenicity of various quinones, a class nones might also be mutagenic, and we have tested this pos- of compounds widely distributed in nature, is demonstrated in sibility using the TA104 strain, which is sensitive to a wide the Salmonella TA104 tester strain. The metabolic pathways variety of oxidative mutagens (17). We have also attempted by which four quinones, menadione, benzo[alpyrene 3,6-qui- to characterize the pathways by which several different qui- none, 9,10-phenanthrenequinone, and danthron, caused mu- nones are metabolized and to study the potential mutagenic- tagenicity in this test system were investigated in detail as were ity of the metabolites and side products formed. We there- the detoxification pathways. The two-electron reduction of fore decided to investigate only those quinones that required these quinones by NAD(P)H-quinone oxidoreductase (DT-di- metabolic activation to exhibit mutagenicity. To limit the aphorase) was not mutagenic, whereas the one-electron reduc- scope of this project we also chose not to study quinones tion, catalyzed by NADPH-cytochrome P-450 reductase, was that possess reactive leaving groups. -
Biophysics News
NEWSLETTER VOLUME 5, ISSUE 1 | WINTER 2020 BIOPHYSICS NEWS SCIENCE FEATURE SEMINAR SERIES Sean McGarry, biophysics graduate student in the LaViolette lab, discusses his Our Spring 2020 Graduate Seminar Se- research interests. ries takes place most Fridays through- My research interests lie in translating My research has evolved to focus on out the semester, from 9:30–10:30 am. machine learning techniques into clini- quantifying the effects of these sources Please join us! cal practice in a manner that improves of variability on the generalizability of Jan 17 | Rodney Willoughby, MD inter-user reliability. The LaViolette lab machine learning algorithms. The LaVi- (MCW), Gaseous microintoxication by works in a subfield called rad-path (ra- olette lab acquired a dataset of whole invasive bacteria diology-pathology) correlation. We align mount prostate slides annotated by five Jan 24 | Sarah Erickson-Bhatt, PhD post-surgical tissue samples with in vivo pathologists, and we used this dataset to (Marquette), Bioimaging of cancer clinical imaging and write pattern detec- demonstrate that inter-observer vari- tion algorithms that predict histological ability can have a substantial effect on Jan 31 | Sean McGarry (MCW), Prostate characteristics noninvasively. the predictive power of a downstream cancer detection with multi-parametric MRI Many sources of variability outside of the machine learning algorithm. We com- parameters of interest can influence the piled a dataset of diffusion fits from 13 Feb 14 | Jon M. Fukuto, PhD (Sonoma output of a machine learning algorithm, institutions and examined the effects of State), The chemical biology of hydrop- particularly in magnetic resonance imag- post-processing decisions on the per- ersulfides: Possible cellular protecting ing. -
The Relationship of NADPH Oxidases and Heme Peroxidases: Fallin' In
MINI REVIEW published: 05 March 2019 doi: 10.3389/fimmu.2019.00394 The Relationship of NADPH Oxidases and Heme Peroxidases: Fallin’ in and Out Gábor Sirokmány 1,2* and Miklós Geiszt 1,2* 1 Department of Physiology, Faculty of Medicine, Semmelweis University, Budapest, Hungary, 2 “Momentum” Peroxidase Enzyme Research Group of the Semmelweis University and the Hungarian Academy of Sciences, Budapest, Hungary Peroxidase enzymes can oxidize a multitude of substrates in diverse biological processes. According to the latest phylogenetic analysis, there are four major heme peroxidase superfamilies. In this review, we focus on certain members of the cyclooxygenase-peroxidase superfamily (also labeled as animal heme peroxidases) and their connection to specific NADPH oxidase enzymes which provide H2O2 for the Edited by: Gabor Csanyi, one- and two-electron oxidation of various peroxidase substrates. The family of NADPH Augusta University, United States oxidases is a group of enzymes dedicated to the production of superoxide and hydrogen Reviewed by: peroxide. There is a handful of known and important physiological functions where Tohru Fukai, Augusta University, United States one of the seven known human NADPH oxidases plays an essential role. In most of Patrick Pagano, these functions NADPH oxidases provide H2O2 for specific heme peroxidases and University of Pittsburgh, United States the concerted action of the two enzymes is indispensable for the accomplishment *Correspondence: of the biological function. We discuss human and other metazoan examples of such Gábor Sirokmány sirokmany.gabor@ cooperation between oxidases and peroxidases and analyze the biological importance med.semmelweis-univ.hu of their functional interaction. We also review those oxidases and peroxidases where this Miklós Geiszt geiszt.miklos@ kind of partnership has not been identified yet. -
Expression in Escherichia Coli of Cytochrome C Reductase Activity from a Maize NADH:Nitrate Reductase Complementary DNA'
Plant Physiol. (1992) 99, 693-699 Received for publication September 20, 1991 0032-0889/92/99/0693/07/$01 .00/0 Accepted December 11, 1991 Expression in Escherichia coli of Cytochrome c Reductase Activity from a Maize NADH:Nitrate Reductase Complementary DNA' Wilbur H. Campbell Phytotechnology Research Center and Department of Biological Sciences, Michigan Technological University, Houghton, Michigan 49931-1295 ABSTRACT the deduced amino acid sequences of NR to related mam- A cDNA clone was isolated from a maize (Zea mays L. cv malian protein sequences because of its similarity to the Mo- W64AxW183E) scutellum Xgtl 1 library using maize leaf pterin domain of sulfite oxidase, and the C-terminal region NADH:nitrate reductase Zmnrl cDNA clone as a hybridization of NR has sequence homology to NADH:Cyt b5 reductase, probe; it was designated Zmnr1S. ZmnrlS was shown to be an which is a FAD-containing enzyme (3, 22). In between the NADH:nitrate reductase clone by nucleotide sequencing and com- Mo-pterin and FAD domains, NR has similarity to mam- parison of its deduced amino acid sequence to Zmnrl. Zmnr1S, malian Cyt b5. This central Cyt b domain of NR is bridged to which is 1.8 kilobases in length and contains the code for both the other two domains on either side of it by highly variable the cytochrome b and flavin adenine dinucleotide domains of sequence regions that appear to be hinges (3). These hinge nitrate reductase, was cloned into the EcoRI site of the Esche- regions are probably exposed in native NR and susceptible to richia coli expression vector pET5b and expressed. -
Cytochrome C, Cytochrome B5 and Electron Transfer
Cytochrome c, cytochrome b5: electron transfer and new functions 1 Iron Protoporphyrin IX, heme b Heme a Prosthetic group Heme a is a form of heme found A flat and planar structure. In cytochromes a and a3. -. Itself Toxic O2 , H2O2 are formed. Insoluble 2 Covalent bonds Cytochrome c is a major player in membrane associated electron transport systems in bacteria and mitochondria. 3 Myoglobin, Hemoglobin His E7 Distal side Heme iron His F8 Proximal side Myoglobin has a strong affinity for oxygen Heme is located in the hydrophobic site. when it is in the lungs, and where the pressure is around 100 torr. When it reaches Heme Fe interacts with His. the tissues, where it's around 20 torr, the Coordination bond affinity for oxygen is still quite high. This makes myoglobin less efficient of an oxygen Propionates of heme interact with Arg. transporter than hemoglobin, which loses it's Ionic bond affinity for oxygen as the pressure goes down and releases the oxygen into the tissues. Heme is easily dissociated from the protein. Myoglobin's strong affinity for oxygen means that it keeps the oxygen binded to itself His (E7) is the oxygen binding site. instead of releasing it into the tissues. 4 Sickle cell anemia & malaria resistance In sickle cell hemoglobin (HbS) glutamic acid in position 6 (in beta chain) is mutated to valine. This change allows the deoxygenated form of the hemoglobin to stick to itself. 5 Figure 1. HO-1 Protects against Severe Malaria Using a mouse model for cerebral malaria, Ferreira et al. (2011) suggest a biochemical basis for the link between sickle cell disease and severe malaria. -
Supplementary Material
Supplementary material: Figure S1. Protein-Protein Interactions of the 127 Dysregulated proteins in brain tissues following IONP exposure. The graph was generated from STRING database. 125 nodes, 183 edges, 2.93 Average node degree, 0.411 Avg. local clustering coefficient, 122 Expected number of edges, PPI enrichment p-value 1.83e-07. 1 Figure S2. Protein-Protein Interactions of the 66 Dysregulated proteins in liver tissues following IONP exposure. The graph was generated from STRING database. 61 nodes, 103 edges, 3.38 Average node degree, 0.412 Avg. local clustering coefficient, 22 Expected number of edges, PPI enrichment p-value < 1.0e-16. 2 Figure S3. Protein-Protein Interactions of the 84 Dysregulated proteins in lung tissues following IONP exposure. The graph was generated from STRING database. 82 nodes, 125 edges, 3.05 Average node degree, 0.422 Avg. local clustering coefficient, 64 Expected number of edges, PPI enrichment p-value 1.07e-11. 3 Table S1. List of all dysregulated proteins in brain tissues following IONP exposure. A) Down regulated proteins and B) Upregulated proteins. Statistically significant iTRAQ ratios (p-value ratio and p-value sample≤0.05) for the 127 proteins that are dysregulated. A) Sequence Peptide Spectral P-Value P-Value Log 10 Accession Name Description Gene Coverage Ratio Count Count Ratio Sample Ratio % P00762 TRY1_RAT Anionic trypsin-1 Prss1 1 8 8.13 0.526 0.001 0.004 -0.279 P08592 A4_RAT Amyloid beta A4 protein App 1 2 1.17 0.546 0.010 0.004 -0.263 Q62696 DLG1_RAT Disks large homolog 1 Dlg1 1 1 1.32