Black, Grey and Watch Lists of Alien Species in the Czech Republic
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Biogeography and Evolution of the Carassius Auratus-Complex in East
Takada et al. BMC Evolutionary Biology 2010, 10:7 http://www.biomedcentral.com/1471-2148/10/7 RESEARCH ARTICLE Open Access Biogeography and evolution of the Carassius auratus-complex in East Asia Mikumi Takada1,2*, Katsunori Tachihara1, Takeshi Kon2, Gunji Yamamoto2, Kei’ichiro Iguchi3, Masaki Miya4, Mutsumi Nishida2 Abstract Background: Carassius auratus is a primary freshwater fish with bisexual diploid and unisexual gynogenetic triploid lineages. It is distributed widely in Eurasia and is especially common in East Asia. Although several genetic studies have been conducted on C. auratus, they have not provided clear phylogenetic and evolutionary descriptions of this fish, probably due to selection bias in sampling sites and the DNA regions analysed. As the first step in clarifying the evolutionary entity of the world’s Carassius fishes, we attempted to clarify the phylogeny of C. auratus populations distributed in East Asia. Results: We conducted a detailed analysis of a large dataset of mitochondrial gene sequences [CR, 323 bp, 672 sequences (528 sequenced + 144 downloaded); CR + ND4 + ND5 + cyt b, 4669 bp in total, 53 sequences] obtained from C. auratus in East Asia. Our phylogeographic analysis revealed two superlineages, one distributed mainly among the Japanese main islands and the other in various regions in and around the Eurasian continent, including the Ryukyus and Taiwan. The two superlineages include seven lineages with high regional specificity that are composed of endemic populations indigenous to each region. The divergence time of the seven lineages was estimated to be 0.2 million years ago (Mya) by a fossil-based method and 1.0-1.9 Mya by the molecular clock method. -
Table S2.Xlsx
Species Family DNA content Chromosome References (pg/nuclei) number Actinopterygii Ptychobarbus dipogon Cyprinidae ‐ 446 [1] Acipenser baerii Acipenseridae 15.02 437 present study Acipenser mikadoi Acipenseridae 12.9 402 [2*, 3] Acipenser brevirostrum Acipenseridae 13.07 372 [4, 5*] Acipenser baerii Acipenseridae 12.7 368 [6*, 7] Acipenser transmontanus Acipenseridae 9.46 271 [5*, 8] Huso dauricus Acipenseridae 8.3 268 [9*, 10] Acipenser schrenckii Acipenseridae 8.2 266 [9*, 10] Carassius auratus langsdorfii Cyprinidae ‐ 204 [11] Carassius auratus auratus Cyprinidae 5.12 150 [12] Corydoras aeneus Callichthyidae 6.6 134 [13] Myxini Eptatretus burgeri Myxinidae 6.0 36 [14*, 15] Paramyxine atami Myxinidae ‐ 34 [14] Petromyzontida Geotria australis Geotriidae 3.08 180 [16*, 17] Lethenteron reissneri Petromyzontidae ‐ 174 [18] Chondrichthyes Notorynchus cepedianus Notorynchidae 8.8 104 [19] Heterodontus francisci Heterodontidae 17.5 102 [19] Sarcopterygii Protopterus dolloi Protopteridae 163.2 68 [20] Latimeria chalumnae Latimeriidae 7.2 48 [21*, 22] Amphibia Xenopus longipes Pipidae ‐ 108 [23] Xenopus ruwenzoriensis Pipidae 7.95 108 [24*, 25] Reptilia Platemys platycephala Chelidae ‐ 96 [26] Carettochelys insculpta Carettochelyidae ‐ 68 [27] Aves Alcedo atthis Alcedinidae 2.8 138 [28, 29*] Upupa epops Upupidae 2.56 126 [28, 30*] Mammalia Tympanoctomys barrerae Octodontidae 16.8 102 [31, 32*] Ichthyomys pittieri Cricetidae ‐ 92 [33] References 1. Yu XY, Yu XJ. A schizothoracin fish species, Diptychus dipogon, with very high number of chromosomes Chrom Inform Serv. 1990;48:17-8. 2. Zhou H, Fujimoto T, Adachi S, Yamaha E, Arai K. Genome size variation estimated by flow cytometry in Acipenser mikadoi, Huso dauricus in relation to other species of Acipenseriformes. -
Management of Transboundary and Straddling Fish Stocks in the Northeast Atlantic in View of Climate-Induced Shifts in Spatial Distribution
Received: 19 March 2020 | Revised: 28 May 2020 | Accepted: 1 June 2020 DOI: 10.1111/faf.12485 ORIGINAL ARTICLE Management of transboundary and straddling fish stocks in the Northeast Atlantic in view of climate-induced shifts in spatial distribution Peter Gullestad1 | Svein Sundby2 | Olav Sigurd Kjesbu2 1Directorate of Fisheries, Bergen, Norway Abstract 2Institute of Marine Research, Bergen, Norway The introduction of 200 n.m. exclusive economic zones (EEZs) in the late 1970s required increased collaboration among neighbouring coastal states to manage Correspondence Olav Sigurd Kjesbu, Institute of Marine transboundary and straddling fish stocks. The established agreements ranged from Research, P.O. Box 1870 Nordnes, Bergen bilateral to multilateral, including high-seas components, as appropriate. However, NO-5817, Norway. Email: [email protected] the 1982 United Nations Convention on the Law of the Sea does not specify how quotas of stocks crossing EEZs should be allocated, nor was it written for topical Funding information Directorate of Fisheries (Norway): Post- scenarios, such as climate change with poleward distribution shifts that differ across Retirement Contract of Employment (P.G.); species. The productive Northeast Atlantic is a hot spot for such shifts, implying Institute of Marine Research (Norway): Post-Retirement Contract of Employment that scientific knowledge about zonal distribution is crucial in quota negotiations. (S.S.); Norwegian Fisheries Research Sales This diverges from earlier, although still valid, agreements that were predominately Tax System (FFA): CLIMRATES (Climate and Vital Rates of Marine Stocks), Institute based on political decisions or historical distribution of catches. The bilateral allo- of Marine Research (Norway), Project no. cations for Barents Sea and North Sea cod remain robust after 40 years, but the 15205 (O.S.K.) management situation for widely distributed stocks, as Northeast Atlantic mackerel and Norwegian spring-spawning herring, appears challenging, with no recent overall agreements. -
Polyphyletic Origin of Ornamental Goldfish
Food and Nutrition Sciences, 2015, 6, 1005-1013 Published Online August 2015 in SciRes. http://www.scirp.org/journal/fns http://dx.doi.org/10.4236/fns.2015.611104 Polyphyletic Origin of Ornamental Goldfish Aleksandr V. Podlesnykh1, Vladimir A. Brykov1,2, Lubov A. Skurikhina1 1Far Eastern Branch of the Russian Academy of Sciences, A. V. Zhirmunsky Institute of Marine Biology, Vladivostok, Russia 2School of Natural Sciences, Far Eastern Federal University, Vladivostok, Russia Email: [email protected] Received 6 May 2015; accepted 17 August 2015; published 20 August 2015 Copyright © 2015 by authors and Scientific Research Publishing Inc. This work is licensed under the Creative Commons Attribution International License (CC BY). http://creativecommons.org/licenses/by/4.0/ Abstract Mitochondrial DNA fragment of cytb was compared in all species Carassius auratus complex and three forms of ornamental goldfish. It is shown that the phylogenetic relationships between com- plex species correspond to the existing views, based on mtDNA data and geographical distribution. All forms of ornamental goldfish have a monophyletic origin from Chinese goldfish C. auratus au- ratus. The analysis showed that three nuclear genes (rps7, GH1 and Rh) in the two forms of orna- mental goldfish (Oriental twintail goldfish and Chinese Ranchu) were almost identical C. auratus auratus genes, while all three gene in another more simple form of goldfish (common goldfish) were highly homologous to carp Cyprinus carpio nuclear genes. The obtained data suggested that in the history of aquarium goldfish breeding occurred the stage of distant hybridization between goldfish and common carp. Subsequently, the nuclear genomes of some ornamental forms could be enriched by goldfish genes (a relatively recent form as Oriental twintail goldfish and Chinese Ranchu) or common carp genes (the simplest and most ancient forms like common goldfish) as a result of multidirectional breeding and selection of aquarium goldfish various forms. -
Electrophoretic Studies of Diploid, Triploid, and Tetraploid Forms of the Japanese Silver Crucian Carp, Carassius Auratus Langsdorfii
Japan.J.Ichthyol. 魚 類 学 雑 誌 40(1):65-75,1993 40(1):65-75,1993 Electrophoretic Studies of Diploid, Triploid, and Tetraploid Forms of the Japanese Silver Crucian Carp, Carassius auratus langsdorfii Yasushi Shimizu,1,2 Takashi Oshiro1 and Mitsuru Sakaizumi2,31 Department of Aquatic Biosciences, Tokyo University of Fisheries, 4-5-7 Konan, Minato-ku, Tokyo 108, Japan 2Department of Experimental Animal Science, The Tokyo Metropolitan Institute of Medical Science, 3-18-22 Honkomagome, Bunkyo-ku, Tokyo 113, Japan 3Present address: Department of Biology, College of General Education, Niigata University, 2-8050 Ikarashi, Niigata 950-21, Japan (Received October 29, 1992; in revisedform February 8, 1993; accepted March 22, 1993) Abstract The diploid-polyploid complex in the Japanese silver crucian carp (ginbuna), Carassius auratus langsdorfii, includes a diploid bisexual form, a triploid gynogenetic form and a tetraploid gynogenetic form. However, the origin of the polyploids remains to be clarified. Flow cytometric and electrophoretic analyses of Japanese crucian carp demonstrated that all the individuals with a two-banded pattern for an AMY-2 gene were polyploid, and 90% of the polyploids gave such a two-banded pattern. One of the two bands was not found in diploid subspecies in Japan but was present in both Korean crucian carp and goldfish. The diploid subspecies, kinbuna (C.auratus subsp.), which is distributed along the Pacific coast of eastern Japan, generated a diagnostic band of phosphoglucomutase. This band was also found in the polyploid "ginbuna" from the same region, but was observed in neither triploids nor diploids from other regions. -
Arctic Invasive Alien Species Strategy and Action Plan
Arctic Invasive Alien Species Strategy and Action Plan 2017 Acknowledgements The Conservation of Arctic Flora and Fauna (CAFF) and Protection of the Arctic Marine Environment (PAME) are Working Groups of the Arctic Council. This publication should be cited as: CAFF and PAME. 2017. Arctic Invasive Alien Species: Strategy and Action Plan, Conservation of Arctic Flora and Fauna and Protection of the Arctic Marine Environment Akureyri, Iceland. ISBN: 978-9935-431-65-3 Cover photo: Brown rat. Photo: Jean-Jacques Boujot/Flickr.com This work is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/. All photographs are subject to a separate restricted copyright and may not be reproduced without explicit consent, which should be sought directly from the copyright holder. Arctic Invasive Alien Species (ARIAS) Steering Committee: » Canada: Bruno Paris, Environment and Climate Change Canada; Kimberly Howland, Fisheries and Oceans Canada » Finland: Johanna Niemivuo-Lahti, Finnish Ministry of Agriculture and Forestry » Iceland: Pawel Wasowicz, Icelandic Institute of Natural History » Norway: Tomas Holmern, Norwegian Environment Agency; Inga Bruteig, Norwegian Institute for Nature Research » Sweden: Melanie Josefsson, Swedish Environmental Protection Agency » The United States of America: Jamie K. Reaser, National Invasive Species Council Secretariat; Gilbert Castellanos, U.S. Fish and Wildlife Service; David Lodge, U.S. -
Invasive Alien Species Pathway Analysis and Horizon Scanning for Countries in Northern Europe
Invasive Alien Species Pathway Analysis and Horizon Scanning for Countries in Northern Europe The report offers knowledge on alien introductions and recommendations for prioritising future management of Invasive Alien Species One of the main drivers of biodiversity loss is Invasive Alien Species (IAS). In order to plan cost-effective measures to prevent the introduction of harmful IAS, we need to know the pathways of introduction. Until now, the measures to prevent harm to native environments and biodiversity by IAS have mainly been reactive methods based on knowledge of the IAS already present. This approach has proven to be a costly and ineffective way to manage IAS. Therefore, early warning of new IAS, in order to implement preventive measures as early as possible, may be a cost-effective way to safeguard our environment and save money. Photo: Arion lusitanicus, Hans Erik Svart Acknowledgement This report was made possible by financial contribution from the Terrestrial Ecosystem Group (TEG) of the Nordic Council of Ministers. Purpose The aim of this project was to contribute to the fulfilment of obligations in the Aichi target 9 under the Convention on Biological Diversity (CBD) and the EU Biodiversity Strategy 2020 target 5. This was done by conducting a pathway analysis and horizon scanning. The pathway analysis was carried out to identify and prioritise pathways of introduction by which alien species were introduced in the Nordic and Baltic region, along with Iceland and the Faroe Islands. In order to examine which new alien species may be introduced and established in the countries in the future, a number of potential door knocker species were assessed by experts. -
Modes of Naturing: Or Stories of Salmon1
Modes of Naturing: or stories of salmon1 Heather Swansona, John Lawb and Marianne Lienc a School of Culture and Society, Department of Anthropology, Århus University, Moesgård Allé 20, building 4235, 134 8270 Højbjerg Denmark ([email protected]) b Department of Sociology, Faculty of Social Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK, and Centre for Science Studies, Department of Sociology, Lancaster University, Lancaster LA1 4YW, UK ([email protected]) c Department of Social Anthropology, University of Oslo Postboks 1091, Blindern, 0317 OSLO, Norway ([email protected]) (10th March 2016; ModesOfNaturing20160310) 1 We are grateful to Solveig Joks for discussion. We also gratefully acknowledge the inspiration, discussions and support of the Centre for Advanced Study in Oslo, Norway that funded and hosted the research project ‘Arctic Domestication in the Era of the Anthropocene’ during the academic year of 2015/2016 Introduction 2 Figure 1: The Norwegian Blacklist Times change, natures change, and what is natural changes too. Figure 1 is the front cover of the 2007 Norwegian Blacklist, a list of species alien to Norway. The Iberian snail on the front cover is indeed originally Iberian. And the red king crab, another alien species comes from the Kamchatka Peninsula. But the Blacklist adds that: ‘Some indigenous species are domesticated and have had their genes altered by artificial selection. If such species escape or run wild, domesticated individuals may hybridise with individuals in the wild populations. The wild forms may thereby be supplied with genes that are poorly adapted to the natural conditions. -
Direct Cytotoxic Activity of CD8+ T Cells Against Ichthyophthirius Multifiliis
426 Abstracts / Fish & Shellfish Immunology 91 (2019) 421e472 importance for stress effects on the immune response in teleosts. Indi- # Corresponding author. vidual aspects of the interference of stress hormones (mainly cortisol) with E-mail address: [email protected] (J. Zou). immune processes have already been reported in some bony fish. Although less studied, the catecholamines adrenaline and noradrenaline have also shown to modulate the immune response of teleost leukocytes via a and b adrenergic receptors. This study aims to expand the actual knowledge on stress-induced immune modulation, in order to evaluate O-014. the effects of stress on the immune system of maraena whitefish (Cor- Direct cytotoxic activity of CD8þ T cells against Ichthyophthirius egonus maraena). This salmonid fish is highly sensitive to stress compared multifiliis in ginbuna crucian carp, Carassius auratus langsdorfii to other salmonid species long adapted to aquaculture. To this end, a large set of specific primers was designed for reverse-transcription quantitative Masaki Sukeda, Koumei Shiota, Takahiro Nagasawa, Miki Nakao, real-time PCR (RT-qPCR) analyses. The primer panel included cell-specific Tomonori Somamoto#. marker genes characterizing the distinct cell populations in the head kidney of C. maraena, which had been sorted using flow cytometry. In Laboratory of Marine Biochemistry, Department of Bioscience and addition, we analysed the expression of catecholamine and cortisol re- Biotechnology, Graduate School of Bioresource and Bioenvironmental ceptors in each population, in order to define the repertoire of stress- Sciences, Kyushu University, Fukuoka, Japan related modulators present in the cells. In the next step, we performed a series of in vitro stimulations of head kidney leukocytes to study the Abstract expression of genes involved in immune activation and acute phase A line of studies has shown that several humoral immune factors including together with catecholamine and cortisol receptors. -
In Vitro Characteristics of Cyprinid Herpesvirus 2: Effect of Kidney Extract Supplementation on Growth
Vol. 115: 223–232, 2015 DISEASES OF AQUATIC ORGANISMS Published August 20 doi: 10.3354/dao02885 Dis Aquat Org In vitro characteristics of cyprinid herpesvirus 2: effect of kidney extract supplementation on growth Tomoya Shibata1, Azusa Nanjo1, Masato Saito1, Keisuke Yoshii1, Takafumi Ito2, Teruyuki Nakanishi3, Takashi Sakamoto1, Motohiko Sano1,* 1Faculty of Marine Science, Tokyo University of Marine Science and Technology, Minato, Tokyo 108-8477, Japan 2Aquatic Animal Health Division, National Research Institute of Aquaculture, Fisheries Research Agency, Tamaki, Mie 519-0423, Japan 3Department of Veterinary Medicine, Nihon University, Fujisawa, Kanagawa 252-0880, Japan ABSTRACT: Herpesviral hematopoietic necrosis caused by goldfish hematopoietic necrosis virus (now identified as cyprinid herpesvirus 2, CyHV-2) has contributed to economic losses in goldfish Carassius auratus culture and is becoming a major obstacle in Prussian carp C. gibelio aquacul- ture in China. Several reports have described difficulties in culturing the virus, with the total loss of infectivity within several passages in cell culture. We succeeded in propagating CyHV-2 with a high infectious titer in a RyuF-2 cell line newly derived from the fin of the Ryukin goldfish variety using culture medium supplemented with 0.2% healthy goldfish kidney extract. The addition of kidney extract to the medium enabled rapid virus growth, resulting in the completion of cyto- pathic effect (CPE) within 4 to 6 d at 25°C. The extract also enabled reproducible virus culture 5−6 −1 with a titer of 10 TCID50 ml . The virus cultured using this protocol showed pathogenicity in goldfish after intraperitoneal injection. The virus grew in RyuF-2 cells at 15, 20, 25, 30, and 32°C but not at 34°C or higher. -
This Article Appeared in a Journal Published by Elsevier. the Attached
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/authorsrights Author's personal copy Molecular Immunology 70 (2016) 1–7 Contents lists available at ScienceDirect Molecular Immunology j ournal homepage: www.elsevier.com/locate/molimm Functional analysis of membrane-bound complement regulatory protein on T-cell immune response in ginbuna crucian carp a,b a,c a a Indriyani Nur , Nevien K. Abdelkhalek , Shiori Motobe , Ryota Nakamura , a a,∗ a Masakazu Tsujikura , Tomonori Somamoto , Miki Nakao a Laboratory of Marine Biochemistry, Department of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka 812-8581, Japan b Aquaculture Department, Fisheries and Marine Science Faculty, Halu Oleo University, Kendari 93232, Indonesia c Department of Internal Medicine, Infectious and Fish diseases, Faculty of Veterinary Medicine, El-Mansoura University, Egypt a r t i c l e i n f o a b s t r a c t Article history: Complements have long been considered to be a pivotal component in innate immunity. Recent Received 9 August 2015 researches, however, highlight novel roles of complements in T-cell-mediated adaptive immunity. -
Spontaneous Triploidy in the California Roach Hesperoleucus Symmetricus (Pisces: Cyprinidae)
Cytogcnet. Cell Genet. 17: 144-149 (1976) Spontaneous triploidy in the California roach Hesperoleucus symmetricus (Pisces: Cyprinidae) J.R.G old 1 and J.C. A vise2 'Genetics Section, Texas A&M University, College Station, Tex., and "Department of Zoology, University of Georgia, Athens, Ga. Abstract A single triploid individual (3n = 75) of the California roach,Hesperoleucus symmetricus, was identified among a sample of nine specimens from the Russian River, California. The diploid number ofH. symmetricus, as revealed by the karyotypes of the remaining eight specimens, is 50. Aside from the all-female triploid unisexual fishes, this is the first report of a triploid fish from the wild, and the second report of a triploid in a bisexual fish species. The most likely origin of the triploid was probably fusion of a haploid sperm with an unreduced ovum. Among the vertebrates, viable triploids are exceedingly infrequent in nature, and, with very few exceptions, they have been found only in certain unisexual forms among the fishes(Schultz, 1971) and salamanders (M aslin , 1971). The exceptions include a few isolated individuals of the bird Gallus domesticus(O hno et al., 1963; Sarvei.la , 1970; A bdel - H ameed and Shoefner , 1971), a few species of salamanders and frogs (references in Cuellar and U yeno , 1972), and the fishSalmo gairdneri (C uellar and U yeno , 1972). Triploidy or diploid/triploid chimerism has been reported in other vertebrates, e.g., man, but is associated with embryonic mortality or early death(C hu et al., 1964; C arr , 1970; Schindler and M ikamo , 1970; Bloom , 1972).