Marine Microorganisms and Global Nutrient Cycles Kevin R
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Probing the Changing Redfield Ratio of Phytoplankton
Probing the Changing Redfield Ratio of phytoplankton Supervisory Team Rosalind Rickaby www.earth.ox.ac.uk/people/rosalind-rickaby Katsumi Matsumoto www.esci.umn.edu/people/katsumi-matsumoto Key Research Question What controls the Redfield Ratio amongst algae? Overview under different conditions of Fe and C availability In 1934, Alfred Redfield made the notable to test the hypothesis that it is the nutrient observation that the relative ratios of C:N:P of efficiency of photosynthesis that dictates the C:N organic matter appeared to be constant throughout ratio of organic matter. the surface oceans, and also matched the Applicants would ideally have a background in dissolved ratios of those nutrients (C106N16P1). Biology/Chemistry/Earth Sciences or The Redfield ratio is fundamental in dictating the Environmental Sciences. strength of the biological sequestration of carbon, and the amount of oxygen that is used for respiration hence is an intimate control on the biotic feedback of phytoplankton on future climate. Despite efforts to understand the co-evolution of Methodology these ratios between the phytoplankton and the Methods to be used will include: Phytoplankton seawater from experimental, field observations Culture and sterile techniques, EA IRMS, and modelling efforts, there is still no mechanistic Spectrophotometry, and Microscopy. understanding of what drives the enormous variability seen across different phytoplankton lineages with various environmental conditions (Garcia et al., 2018). References & Further Reading Nature Geoscience -
Marine Microorganisms: Evolution and Solution to Pollution Fu L Li1, Wang B1,2
COMMENTARY Marine microorganisms: Evolution and solution to pollution Fu L Li1, Wang B1,2 Li FL, Wang B. Marine microorganisms: Evolution and solution to pollution. J Mar Microbiol. 2018;2(1):4-5. nce ocean nurtured life, now she needs our care. Marine microorganism will be an opportunity to further understand ourselves and to seek for new Ois the host of ocean in all ages. We should learn from them humbly. methods of fighting old infections. Marine microorganism is tightly bond with human during the history of evolution and nowadays’ environment pollution. Along with industrial revolution, our marine ecosystem suffered serious pollutions. Microplastics are tiny plastic particles (<5 mm) (Figure 1B), Although the topic is still in debate, life is probably originated from which poison marine lives. Because these microplastics are very hard to be submarine in hydrothermal vent systems (1). In the journey of evolution, our degraded, it is predicted that there will be more microplastics than fish in biosphere was completely dominated by microbes for a very long time (Figure ocean by the year 2050 (7). Since marine sediments are considered as the sink 1A). Human being evolves with those microorganisms. Consequently, of microplastics and marine microbes are key dwellers of marine sediments, the influences of microorganisms can be found in all aspects of human more attention should be paid on the interactions between microplastics biology. More than 65% of our genes originated with bacteria, archaea, and and marine microbes. Actually, a call for this has been published in 2011 unicellular eukaryotes, including those genes responsible for host-microbe (8). -
Phytoplankton As Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate
sustainability Review Phytoplankton as Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate Samarpita Basu * ID and Katherine R. M. Mackey Earth System Science, University of California Irvine, Irvine, CA 92697, USA; [email protected] * Correspondence: [email protected] Received: 7 January 2018; Accepted: 12 March 2018; Published: 19 March 2018 Abstract: The world’s oceans are a major sink for atmospheric carbon dioxide (CO2). The biological carbon pump plays a vital role in the net transfer of CO2 from the atmosphere to the oceans and then to the sediments, subsequently maintaining atmospheric CO2 at significantly lower levels than would be the case if it did not exist. The efficiency of the biological pump is a function of phytoplankton physiology and community structure, which are in turn governed by the physical and chemical conditions of the ocean. However, only a few studies have focused on the importance of phytoplankton community structure to the biological pump. Because global change is expected to influence carbon and nutrient availability, temperature and light (via stratification), an improved understanding of how phytoplankton community size structure will respond in the future is required to gain insight into the biological pump and the ability of the ocean to act as a long-term sink for atmospheric CO2. This review article aims to explore the potential impacts of predicted changes in global temperature and the carbonate system on phytoplankton cell size, species and elemental composition, so as to shed light on the ability of the biological pump to sequester carbon in the future ocean. -
Antibiotics from Deep-Sea Microorganisms: Current Discoveries and Perspectives
marine drugs Review Antibiotics from Deep-Sea Microorganisms: Current Discoveries and Perspectives Emiliana Tortorella 1,†, Pietro Tedesco 1,2,†, Fortunato Palma Esposito 1,3,†, Grant Garren January 1,†, Renato Fani 4, Marcel Jaspars 5 and Donatella de Pascale 1,3,* 1 Institute of Protein Biochemistry, National Research Council, I-80131 Naples, Italy; [email protected] (E.T.); [email protected] (P.T.); [email protected] (F.P.E.); [email protected] (G.G.J.) 2 Laboratoire d’Ingénierie des Systèmes Biologiques et des Procédés, INSA, 31400 Toulouse, France 3 Stazione Zoologica “Anthon Dorn”, Villa Comunale, I-80121 Naples, Italy 4 Department of Biology, University of Florence, Sesto Fiorentino, I-50019 Florence, Italy; renato.fani@unifi.it 5 Marine Biodiscovery Centre, Department of Chemistry, University of Aberdeen, Aberdeen, Scotland AB24 3UE, UK; [email protected] * Correspondence: [email protected]; Tel.: +39-0816-132-314; Fax: +39-0816-132-277 † These authors equally contributed to the work. Received: 23 July 2018; Accepted: 27 September 2018; Published: 29 September 2018 Abstract: The increasing emergence of new forms of multidrug resistance among human pathogenic bacteria, coupled with the consequent increase of infectious diseases, urgently requires the discovery and development of novel antimicrobial drugs with new modes of action. Most of the antibiotics currently available on the market were obtained from terrestrial organisms or derived semisynthetically from fermentation products. The isolation of microorganisms from previously unexplored habitats may lead to the discovery of lead structures with antibiotic activity. The deep-sea environment is a unique habitat, and deep-sea microorganisms, because of their adaptation to this extreme environment, have the potential to produce novel secondary metabolites with potent biological activities. -
Marine Microbial Diversity
Marine microbial diversity 27 K. S. Sobhana Marine Biodiversity Division, Central Marine Fisheries Research Institute, Kochi-682 018 Microbes were the only form of life for the first 2-3 billion and also based on iii) concentration of nutrients and required years of planetary and biological evolution. Life most likely growth substances (Oligotrophic, Mesotrophic, Eutrophic). began in the oceans and marine microorganisms are the However, interfaces tend to be hotspots of diversity and closest living descendants of the original forms of life. Early biological activity. Marine microbial habitats at interfaces marine microorganisms also helped create the conditions include the air-water, water-sediment, water-ice, and under which subsequent life developed. More than two billion host macroorganism-water interfaces. The sub-millimeter years ago, the generation of oxygen by photosynthetic marine scale of physical and chemical variability in these habitats microorganisms helped shape the chemical environment in poses a serious challenge to studying interface habitats in which plants, animals, and all other life forms have evolved. detail. The fact that variations can even occur within a few Macroscopic life and planetary habitability completely millimetres, suggests that microbial diversity encompasses depend upon the transformations mediated by complex more than the documented evidence available. Hence, microbial communities. These microscopic factories both biogeography is gaining importance as a field of study from aerobic and anaerobic are the essential catalysts for all of the microbial diversity point of interest. Due to the innately chemical reactions within the biogeochemical cycles. Their small size of the microorganisms, environmental complexity unique metabolisms allow marine microbes to carry out many plays a major role in determining diversity. -
Ch. 9: Ocean Biogeochemistry
6/3/13 Ch. 9: Ocean Biogeochemistry NOAA photo gallery Overview • The Big Picture • Ocean Circulation • Seawater Composition • Marine NPP • Particle Flux: The Biological Pump • Carbon Cycling • Nutrient Cycling • Time Pemitting: Hydrothermal venting, Sulfur cycling, Sedimentary record, El Niño • Putting It All Together Slides borrowed from Aradhna Tripati 1 6/3/13 Ocean Circulation • Upper Ocean is wind-driven and well mixed • Surface Currents deflected towards the poles by land. • Coriolis force deflects currents away from the wind, forming mid-ocean gyres • Circulation moves heat poleward • River influx is to surface ocean • Atmospheric equilibrium is with surface ocean • Primary productivity is in the surface ocean Surface Currents 2 6/3/13 Deep Ocean Circulation • Deep and Surface Oceans separated by density gradient caused by differences in Temperature and Salinity • This drives thermohaline deep circulation: * Ice forms in the N. Atlantic and Southern Ocean, leaving behind cold, saline water which sinks * Oldest water is in N. Pacific * Distribution of dissolved gases and nutrients: N, P, CO2 Seawater Composition • Salinity is defined as grams of salt/kg seawater, or parts per thousand: %o • Major ions are in approximately constant concentrations everywhere in the oceans • Salts enter in river water, and are removed by porewater burial, sea spray and evaporites (Na, Cl). • Calcium and Sulfate are removed in biogenic sediments • Magnesium is consumed in hydrothermal vents, in ionic exchange for Ca in rock. • Potassium adsorbs in clays. 3 6/3/13 Major Ions in Seawater The Two-Box Model of the Ocean Precipitation Evaporation River Flow Upwelling Downwelling Particle Flux Sedimentation 4 6/3/13 Residence time vs. -
Corals and Sponges Under the Light of the Holobiont Concept: How Microbiomes Underpin Our Understanding of Marine Ecosystems
fmars-08-698853 August 11, 2021 Time: 11:16 # 1 REVIEW published: 16 August 2021 doi: 10.3389/fmars.2021.698853 Corals and Sponges Under the Light of the Holobiont Concept: How Microbiomes Underpin Our Understanding of Marine Ecosystems Chloé Stévenne*†, Maud Micha*†, Jean-Christophe Plumier and Stéphane Roberty InBioS – Animal Physiology and Ecophysiology, Department of Biology, Ecology & Evolution, University of Liège, Liège, Belgium In the past 20 years, a new concept has slowly emerged and expanded to various domains of marine biology research: the holobiont. A holobiont describes the consortium formed by a eukaryotic host and its associated microorganisms including Edited by: bacteria, archaea, protists, microalgae, fungi, and viruses. From coral reefs to the Viola Liebich, deep-sea, symbiotic relationships and host–microbiome interactions are omnipresent Bremen Society for Natural Sciences, and central to the health of marine ecosystems. Studying marine organisms under Germany the light of the holobiont is a new paradigm that impacts many aspects of marine Reviewed by: Carlotta Nonnis Marzano, sciences. This approach is an innovative way of understanding the complex functioning University of Bari Aldo Moro, Italy of marine organisms, their evolution, their ecological roles within their ecosystems, and Maria Pia Miglietta, Texas A&M University at Galveston, their adaptation to face environmental changes. This review offers a broad insight into United States key concepts of holobiont studies and into the current knowledge of marine model *Correspondence: holobionts. Firstly, the history of the holobiont concept and the expansion of its use Chloé Stévenne from evolutionary sciences to other fields of marine biology will be discussed. -
Antibiotic Activity of Marine Microorganisms
Antibiotic activity of marine microorganisms ROSMAN B. BAAM, NARrN M. GANrmI and YvoNNr M. FRZIVAS Department of Microbiology, St. Xavier' s College, Bombay, India KURZFASSUNG: Antibiotische Aktivit~t mariner Mikroorganismen. Aus 41 Seewasserpro- ben verschiedener Herkunl~ wurden 60 St~imme mariner Bakterien mit antagonistischen Eigen- schai%n gegeniiber Staphylococcus aureus und Salmonella typhosa isoIiert. Die Wirkung ver- schiedener N~ihrstoffe auf die Produktion der antimikrobiellen Substanzen wurde untersucht. INTRODUCTION The antagonistic interrelationships among microorganisms have attracted atten- tion since the dawn of bacteriology. The antagonists which are abte to combat and destroy disease producing microbes are found to inhabit, in addition to the soil, various other natural substrates. Although, however, the soil organisms have been greatly exploited for their antibiotics, the skein of complicating factors which influence the destruction of terrestrial organisms in marine environments has yet to be fully unravelled. There are innumerable reports on the bactericidal effects of sea water on the terrigenous microflora (BoYcr & HAI~DMAN 1896, KLEIN 1905, KOI~tNrK 1927, TRAWlNSKI 1929, ZoBELL & ANDERS~N 1936, CARVENT~R, SZTTER & WErNBEI~G 1938, RICHOV, N~ANT & RICHOU 1955, P~AMER, CARLVCC~ & SCARVINO 1963) but ZoBrLL & FrLTI~AM (1936) were among the first to make specific mention of the possible presence of toxic substances in sea water. In 1952 DE BALSAC, BEI~TOZZ~ & GA~DIN observed that the bactericidal principle in sea water was independent of salinity, was thermolabile and persisted after passage through a Chamberland filter. Dr GIAXA (I889) was probably the first to report the existence in the sea, of bacteria antagonistic to anthrax bacilli and Vibrio comma. -
Chapter 13 Lecture
ChapterChapter 1 13 Clickers Lecture Essentials of Oceanography Eleventh Edition Biological Productivity and Energy Transfer Alan P. Trujillo Harold V. Thurman © 2014 Pearson Education, Inc. Chapter Overview • Primary productivity is photosynthesis. • Productivity is globally and seasonally variable. • Feeding relationships are represented by food chains and food webs. • Oceans are being overfished. © 2014 Pearson Education, Inc. Primary Productivity • Rate at which energy is stored in organic matter – Photosynthesis uses solar radiation. – Chemosynthesis uses chemical reactions. • 99.9% of the ocean’s biomass relies directly or indirectly on photosynthesis for food. © 2014 Pearson Education, Inc. Photosynthesis © 2014 Pearson Education, Inc. Measurement of Primary Productivity • Directly – capture plankton in plankton nets • Measure radioactive carbon in seawater © 2014 Pearson Education, Inc. Measurement of Primary Productivity • Monitor ocean color with satellites – Photosynthetic phytoplankton use green pigment chlorophyll • SeaWiFS (Sea-viewing Wide Field of View Sensor) satellite sensor collected ocean color data 1997–2010 • MODIS (Moderate Resolution Imaging Spectroradiometer) – current – Measures 36 spectral frequencies © 2014 Pearson Education, Inc. Factors Affecting Primary Productivity • Nutrient availability – Nitrate, phosphorous, iron, silica – Most from river runoff – Productivity high along continental margins – Redfield ratio – C:N:P © 2014 Pearson Education, Inc. Factors Affecting Primary Productivity • Solar radiation – Uppermost surface seawater and shallow seafloor – Compensation depth – net photosynthesis becomes zero – Euphotic zone —from surface to about 100 meters (330 feet) • Enough light for photosynthesis © 2014 Pearson Education, Inc. Light Transmission in Ocean Water • Visible light portion of the electromagnetic spectrum • Blue wavelengths penetrate deepest • Longer wavelengths (red, orange) absorbed first © 2014 Pearson Education, Inc. Transmission of Light in Seawater © 2014 Pearson Education, Inc. -
Introduction to Marine Primary Productivity and Carbon Cycle
Introduction to marine primary productivity and carbon cycle Satya Prakash [email protected] 400 Law Dome Ice Core, Antarctica 380 Mauna Loa, Hawaii Slope: 360 1970 - 1979: 1.3 ppm y-1 -1 340 2000 - 2006: 1.9 ppm y 320 Concentration (ppm) 2 CO 300 280 1820 1840 1860 1880 1900 1920 1940 1960 1980 2000 2020 Year CO2 – Temperature Relationship CO2 Concentration Temperature 380 4 2 340 0 300 -2 (ppmv) 2 260 -4 Degree C Degree CO -6 220 -8 180 -10 0 50 100 150 200 250 300 350 400 450 Age (Kyr) VOSTOK Ice Core data How much is 100 ppm?? 1 ppm = 2.12 * 1015 gm = 2.12*109 tonnes 100 ppm = 2.12 thousand crore tonnes 1m. 1m. = 1000 kg = 2.44 टन 1m. CO2 1m. Water or one tonne 1m. 1m. Partition of Anthropogenic Carbon Emissions into Sinks [2000-2006] 45% of all CO2 emissions accumulated in the atmosphere 55% were removed by natural sinks Ocean removes ~ 24% Land removes ~ 30% Upper Photic Layer Photosynthesis O2 O2 CO2 CO2 Respiration Deeper Aphotic Layer The Ocean Euphotic zone light - ~little N Aphotic zone no light - lots N Photosynthesis is a process that generates the organic matter in phytoplankton cells. The process of photosynthesis can be represented as: hv 106CO2 + 122H2O + 16HNO3 + H3PO4 (CH2O)106(NH3)16H3PO4 + 138O2 Available solar energy in the waveband 400-700 nm. This reaction illustrates the need for the nutrients: nitrate and phosphate. It also shows that for every 106 CO2 molecules taken up, approximately 138 O2 molecules are produced. -
A Review of the Methods and Metrics in Research, Implementation, and Management of Integrated Multi-Trophic Aquaculture
The University of San Francisco USF Scholarship: a digital repository @ Gleeson Library | Geschke Center Master's Projects and Capstones Theses, Dissertations, Capstones and Projects Spring 5-14-2020 A Review of the Methods and Metrics in Research, Implementation, and Management of Integrated Multi-Trophic Aquaculture Cassandra Erickson [email protected] Follow this and additional works at: https://repository.usfca.edu/capstone Part of the Sustainability Commons, and the Water Resource Management Commons Recommended Citation Erickson, Cassandra, "A Review of the Methods and Metrics in Research, Implementation, and Management of Integrated Multi-Trophic Aquaculture" (2020). Master's Projects and Capstones. 1028. https://repository.usfca.edu/capstone/1028 This Project/Capstone is brought to you for free and open access by the Theses, Dissertations, Capstones and Projects at USF Scholarship: a digital repository @ Gleeson Library | Geschke Center. It has been accepted for inclusion in Master's Projects and Capstones by an authorized administrator of USF Scholarship: a digital repository @ Gleeson Library | Geschke Center. For more information, please contact [email protected]. This Master’s Project A Review of Methods and Metrics in Research, Implementation, and Management of Integrated Multi-Trophic Aquaculture By: Cassandra Erickson is submitted in partial fulfillment of the requirements for the degree of Master of Science in Environmental Management at the University of San Francisco Submitted: Received: .................................................. -
The Elements of Marine Life Noah J
commentary most direct effect of human activity on the whether they do so through phenotypic Nicolas Gruber is in the Environmental oceanic N cycle is the massive application or genotypic changes. Clear latitudinal Physics group, Institute of Biogeochemistry and of fertilizers full of bioavailable N, much trends in the N:P ratio of phytoplankton Pollutant Dynamics, ETH Zürich, 8092 Zürich, of which makes its way to the ocean communities have been found14,15. It Switzerland. Curtis A. Deutsch is at the School of either via rivers or through long-range remains to be seen whether the shifting Oceanography, University of Washington, Seattle, atmospheric transport13. boundaries of major ocean biomes can Washington 98195, USA. Currently, we can only speculate alter the large-scale patterns of plankton e-mail: [email protected] about how these perturbations, and their N:P ratios, and how that would modify the interactions, will alter the marine nitrogen stabilizing feedbacks. References cycle and affect its homeostasis. Given Redfield’s pioneering view of the 1. Redfield, A. C. in James Johnston Memorial Volume that most stabilizing feedbacks operate ocean as a system capable of homeostatic (ed. Daniel, R. J.) 176–192 (Univ. Press of Liverpool, 1934). 2. Redfield, A. C. Am. Sci. 46, 205–221 (1958). on timescales of decades and longer, it is regulation helped pave the way for the 3. Deutsch, C., Sigman, D. M., Thunell, R. C., Meckler, A. N. & likely that we will see widespread temporal broader and now commonplace recognition Haug, G. H. Glob. Biogeochem. Cycles 18, GB4012 (2004). imbalances in the marine nitrogen cycle.