Implications for Dredging Management
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Functional Equivalence and Evolutionary Convergence In
Functional equivalence and evolutionary convergence PNAS PLUS in complex communities of microbial sponge symbionts Lu Fana,b, David Reynoldsa,b, Michael Liua,b, Manuel Starkc,d, Staffan Kjelleberga,b,e, Nicole S. Websterf, and Torsten Thomasa,b,1 aSchool of Biotechnology and Biomolecular Sciences and bCentre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales 2052, Australia; cInstitute of Molecular Life Sciences and dSwiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland; eSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Republic of Singapore; and fAustralian Institute of Marine Science, Townsville, Queensland 4810, Australia Edited by W. Ford Doolittle, Dalhousie University, Halifax, NS, Canada, and approved May 21, 2012 (received for review February 24, 2012) Microorganisms often form symbiotic relationships with eukar- ties (11, 12). Symbionts also can be transmitted vertically through yotes, and the complexity of these relationships can range from reproductive cells and larvae, as has been demonstrated in those with one single dominant symbiont to associations with sponges (13, 14), insects (15), ascidians (16), bivalves (17), and hundreds of symbiont species. Microbial symbionts occupying various other animals (18). Vertical transmission generally leads equivalent niches in different eukaryotic hosts may share func- to microbial communities with limited variation in taxonomy and tional aspects, and convergent genome evolution has been function among host individuals. reported for simple symbiont systems in insects. However, for Niches with similar selections may exist in phylogenetically complex symbiont communities, it is largely unknown how prev- divergent hosts that lead comparable lifestyles or have similar alent functional equivalence is and whether equivalent functions physiological properties. -
Collation and Validation of Museum Collection Databases Related to the Distribution of Marine Sponges in Northern Australia
1 COLLATION AND VALIDATION OF MUSEUM COLLECTION DATABASES RELATED TO THE DISTRIBUTION OF MARINE SPONGES IN NORTHERN AUSTRALIA. JOHN N.A. HOOPER & MERRICK EKINS 2 3 Collation and validation of museum collection databases related to the distribution of marine sponges in Northern Australia (Contract National Oceans Office C2004/020) John N.A. Hooper & Merrick Ekins Queensland Museum, PO Box 3300, South Brisbane, Queensland, 4101, Australia ([email protected], [email protected]) CONTENTS SUMMARY ......................................................................................................................... 6 1. INTRODUCTION ......................................................................................................... 10 1.1. General Introduction ..................................................................................... 10 1.2. Definitions of Australia’s marine bioregions ............................................... 12 2. MATERIALS & METHODS ....................................................................................... 16 2.1. Specimen point-data conversion ................................................................... 16 2.2. Geographic coverage and scales of analysis................................................. 18 2.3. Species distributions....................................................................................... 19 2.4. Modelled distribution datasets and historical sponge data ........................ 20 2.5. Identification of useful datasets and gaps in data, prioritised -
Description of Key Species Groups in the East Marine Region
Australian Museum Description of Key Species Groups in the East Marine Region Final Report – September 2007 1 Table of Contents Acronyms........................................................................................................................................ 3 List of Images ................................................................................................................................. 4 Acknowledgements ....................................................................................................................... 5 1 Introduction............................................................................................................................ 6 2 Corals (Scleractinia)............................................................................................................ 12 3 Crustacea ............................................................................................................................. 24 4 Demersal Teleost Fish ........................................................................................................ 54 5 Echinodermata..................................................................................................................... 66 6 Marine Snakes ..................................................................................................................... 80 7 Marine Turtles...................................................................................................................... 95 8 Molluscs ............................................................................................................................ -
© the Authors 2019. All Rights Reserved
© The Authors 2019. All rights reserved. www.publish.csiro.au Index Note: Bold page numbers refer to illustrations. abalones 348 tenella 77 Acanthaster 134, 365, 367, 393 tenuis 272 mauritiensis 134, 135 white syndrome 152 planci 134 Acroporidae 136, 274–5, 276 solaris 367 Acrozoanthus australiae 264, 265 cf. solaris 134, 135, 144, 165, 270, 275, 339, 345, 366 acrozooid polyps 287 sp. A nomen nudum 134 Actaeomorpha 337 Acanthaster outbreaks 134–5 scruposa 335 causes 134–5, 144–6, 163–4, 165, 367 Acteonidae 349 management 135 Actinaria 257, 259–63 see also crown-of-thorns starfish (COTS) outbreaks anatomical features 258 Acanthasteridae 367 cnidae types in 260 Acanthastrea echinata 279 Actiniidae 263 Acanthella cavernosa 236, 238 Actinocyclidae 349 Acanthochitonidae 349 Actinodendron glomeratum 261 Acanthogorgia 302, 306 Actinopyga 369, 370 sp. 302 echinites 372 Acanthogorgiidae 302 miliaris 372 Acanthopargus spp. 126 sp. 372 Acanthopleura gemmata 107, 110 Aegiceras corniculatum 221, 222, 223 Acanthuridae 390, 396 Aegiridae 349 Acanthurus aeolid nudibranchs 346, 347, 349 blochii 396 Aeolidiidae 349 lineatus 395, 396 Aequorea 202 mata 393 Afrocucumis africana 368, 370 olivaceus 395 Agariciidae 275, 276 Acartia sp. 192 Agelas axifera 236, 238 accessory pigments 89 aggressive mimicry 401 Acetes 333 Agjajidae 349 sp. 192 agricultural activities, sediments and nutrients from 161–5 Achelata 333, 334–6 Ailsastra sp. 368 acorn barnacles 328 Aiptasia pulchella 260 acorn dog whelk 346, 347 Aipysurus 415, 416 Acropora 31, 33, 59, 135, 136, 150, 184, 211, 272, 273, 274–5, 339 duboisii 412, 413, 415 brown band disease 152 laevis 412, 413, 415, 416 clathrata 79 mosaicus 415 echinata 276 Alcyonacea 67, 283, 290–309 global diversity 186 Alcyonidium sp. -
Functional Equivalence and Evolutionary Convergence in Complex Communities of Microbial Sponge Symbionts
Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts Lu Fana,b, David Reynoldsa,b, Michael Liua,b, Manuel Starkc,d, Staffan Kjelleberga,b,e, Nicole S. Websterf, and Torsten Thomasa,b,1 aSchool of Biotechnology and Biomolecular Sciences and bCentre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales 2052, Australia; cInstitute of Molecular Life Sciences and dSwiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland; eSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Republic of Singapore; and fAustralian Institute of Marine Science, Townsville, Queensland 4810, Australia Edited by W. Ford Doolittle, Dalhousie University, Halifax, NS, Canada, and approved May 21, 2012 (received for review February 24, 2012) Microorganisms often form symbiotic relationships with eukar- ties (11, 12). Symbionts also can be transmitted vertically through yotes, and the complexity of these relationships can range from reproductive cells and larvae, as has been demonstrated in those with one single dominant symbiont to associations with sponges (13, 14), insects (15), ascidians (16), bivalves (17), and hundreds of symbiont species. Microbial symbionts occupying various other animals (18). Vertical transmission generally leads equivalent niches in different eukaryotic hosts may share func- to microbial communities with limited variation in taxonomy and tional aspects, and convergent genome evolution has been function among host individuals. reported for simple symbiont systems in insects. However, for Niches with similar selections may exist in phylogenetically complex symbiont communities, it is largely unknown how prev- divergent hosts that lead comparable lifestyles or have similar alent functional equivalence is and whether equivalent functions physiological properties. -
Phylogenetic Diversity, Functional Convergence, and Stress Response of the Symbiotic System Between Sponges and Microorganisms
Phylogenetic Diversity, Functional Convergence, and Stress Response of the Symbiotic System Between Sponges and Microorganisms Lu Fan A thesis submitted to the University of New South Wales for the degree of Doctor of Philosophy April 2012 Abstract All living multicellular organisms contain associated microorganisms, which often make substantial symbiotic contributions to host physiology, behaviors and evolution. Marine sponges host dense and highly diverse communities of symbiotic microorganisms. These symbionts are assembled in stable and host-specific community structures and are often inherited through the sponge’s generations. Previous investigations have provided a good understanding of the phylogenetic diversity of microbial symbionts in marine sponges. However the functional features that underpin their symbiotic interactions are largely unknown. This thesis uses sponges as models to address fundamental concepts of microbial symbiosis, including community diversity and assembly, metabolic interactions with the host and other symbionts, as well as symbiosis stability under perturbations. State-of-the-art techniques including 16S rRNA gene pyro-tag-sequencing, metagenomics and metaproteomics were applied. Specifically, a pipeline was developed to reconstruct full-length ribosomal rRNA genes from pyrosequencing metagenomic shotgun data. This work showed that a substantial proportion of microbial diversity has been typically missed by the PCR-based approaches. Detailed metagenomic analyses then identified the functional core in symbiont communities from taxonomically distinct sponge species. The result indicated that common functions were provided by distinct but functionally equivalent symbionts and enzymes in different sponge hosts. Moreover, the abundant elements involved in horizontal gene transfer suggested their key roles in distributing core functions between co-evolutionary symbionts and in facilitating functional convergence on the community scale. -
10Th World Sponge Conference
10th World Sponge Conference NUI Galway 25-30 June 2017 Cover photographs - Bernard Picton. South Africa, 2008. Cover photographs - Bernard Picton. South CAMPUS MAP Áras na Mac Léinn and Bailey Allen Hall 1 The Quadrangle Accessible Route Across Campus (for the mobility 2 Áras na Gaeilge impaired) To Galway City 3 The Hardiman Building IT Building 4 Arts Millennium Building Cafés, restaurants and bars 5 Sports Centre A An Bhialann Cathedral 6 Arts / Science Building B Smokey Joe’s Café D 7 IT Building Martin Ryan Building C 8 10 8 Orbsen Building River D 9 9 Student Information Desk College Bar 7 12 Corrib (SID) / Áras Uí Chathail E Zinc Café C 10 Áras na Mac Léinn F 11 and Bailey Allen Hall Friars Restaurant Arts / Science Building 11 Human Biology Building 13 (under construction) Q Engineering Building U D I 12 Bank of Ireland Theatre N River A C O E R Corrib N 13 Martin Ryan Building 10th WSC Y T T I E B S N 14 Áras Moyola R N 2 E I V A I N 15 J.E. Cairnes School of L 6 U B A 3 Business and Economics R I D 16 Corrib Village Áras Moyola G E University Road (Student Accommodation) Entrance 17 Institute of Lifecourse and Society 18 Park and Ride 1 D 4 I S 19 Engineering Building T I LL E R 5 Y R O A NEWCA Under Construction D STL E ROAD Please excuse our temporary appearance. The Hardiman Building Institute of Lifecourse and Society 19 AD E O R LE ST 14 CA EW N Arts Millennium Building Newcastle Road 15 Entrance 16 F P&R 18 17 J.E. -
Diversity, Structure and Convergent Evolution of the Global Sponge Microbiome
ARTICLE Received 1 Nov 2015 | Accepted 9 May 2016 | Published 16 Jun 2016 DOI: 10.1038/ncomms11870 OPEN Diversity, structure and convergent evolution of the global sponge microbiome Torsten Thomas1, Lucas Moitinho-Silva1, Miguel Lurgi2, Johannes R. Bjo¨rk3,4, Cole Easson5, Carmen Astudillo-Garcı´a6, Julie B. Olson7, Patrick M. Erwin8, Susanna Lo´pez-Legentil8, Heidi Luter9, Andia Chaves-Fonnegra10, Rodrigo Costa11, Peter J. Schupp12, Laura Steindler13, Dirk Erpenbeck14, Jack Gilbert15,16, Rob Knight17, Gail Ackermann17, Jose Victor Lopez10, Michael W. Taylor6, Robert W. Thacker18, Jose M. Montoya3, Ute Hentschel19 & Nicole S. Webster20 Sponges (phylum Porifera) are early-diverging metazoa renowned for establishing complex microbial symbioses. Here we present a global Porifera microbiome survey, set out to establish the ecological and evolutionary drivers of these host–microbe interactions. We show that sponges are a reservoir of exceptional microbial diversity and major contributors to the total microbial diversity of the world’s oceans. Little commonality in species composition or structure is evident across the phylum, although symbiont communities are characterized by specialists and generalists rather than opportunists. Core sponge microbiomes are stable and characterized by generalist symbionts exhibiting amensal and/or commensal interactions. Symbionts that are phylogenetically unique to sponges do not disproportionally contribute to the core microbiome, and host phylogeny impacts complexity rather than composition of the symbiont community. Our findings support a model of independent assembly and evolution in symbiont communities across the entire host phylum, with convergent forces resulting in analogous community organization and interactions. 1 School of Biological, Earth and Environmental Sciences, Centre for Marine Bio-Innovation and School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia. -
Effects of Sediment Smothering on the Sponge Holobiont with Implications
www.nature.com/scientificreports OPEN Effects of sediment smothering on the sponge holobiont with implications for dredging Received: 31 October 2016 Accepted: 14 June 2017 management Published: xx xx xxxx Mari-Carmen Pineda 1,2, Brian Strehlow1,2,3, Miriam Sternel4, Alan Duckworth1,2, Joost den Haan5, Ross Jones1,2 & Nicole S. Webster 1,2 One of the ways dredging can affect benthic habitats is through high levels of sediment deposition, which has the potential to smother sessile organisms such as sponges. In order to provide pressure- response values to sedimentation and tease apart the different cause-effect pathways of high turbidity, 5 sponge species, including heterotrophic and phototrophic nutritional modes, were exposed for up to 30 d to multiple sediment deposition events, each of which resulted in an initial covering of 80–100% of the surface of the sponges in a layer ~0.5 mm thick. The response of the sponges was examined using a suite of different response variables including growth, respiration, lipid content, community composition of the microbial symbionts, and maximum quantum yield and chlorophyll content of the phototrophic symbionts. Different species showed different mechanisms of sediment rejection and different patterns of sediment clearance. All species survived the treatments, were able to tolerate high levels of partial covering of their surfaces, and for most species the treatment did not alter the health of the sponge holobiont. Results from this study will guide interpretation of experiments examining the combined effects of all three dredging-related pressures, and aid the development of water quality thresholds for impact prediction purposes. -
A New Genus and Species of Abyssal Sponge Commonly Encrusting Polymetallic Nodules in the Clarion-Clipperton Zone, East Pacific Ocean
Systematics and Biodiversity ISSN: 1477-2000 (Print) 1478-0933 (Online) Journal homepage: http://www.tandfonline.com/loi/tsab20 A new genus and species of abyssal sponge commonly encrusting polymetallic nodules in the Clarion-Clipperton Zone, East Pacific Ocean Swee-Cheng Lim, Helena Wiklund, Adrian G. Glover, Thomas G. Dahlgren & Koh-Siang Tan To cite this article: Swee-Cheng Lim, Helena Wiklund, Adrian G. Glover, Thomas G. Dahlgren & Koh-Siang Tan (2017) A new genus and species of abyssal sponge commonly encrusting polymetallic nodules in the Clarion-Clipperton Zone, East Pacific Ocean, Systematics and Biodiversity, 15:6, 507-519, DOI: 10.1080/14772000.2017.1358218 To link to this article: http://dx.doi.org/10.1080/14772000.2017.1358218 Published online: 24 Sep 2017. Submit your article to this journal Article views: 1338 View related articles View Crossmark data Citing articles: 1 View citing articles Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tsab20 Download by: [71.206.48.162] Date: 17 November 2017, At: 12:37 Systematics and Biodiversity (2017), 15(6): 507–519 Research Article A new genus and species of abyssal sponge commonly encrusting polymetallic nodules in the Clarion-Clipperton Zone, East Pacific Ocean SWEE-CHENG LIM1, HELENA WIKLUND2, ADRIAN G. GLOVER2, THOMAS G. DAHLGREN3,4 & KOH-SIANG TAN1 1Keppel-NUS Corporate Laboratory, Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227 2Life Sciences Department, The Natural History Museum, Cromwell Road, London SW7 5BD, UK 3Uni Research, Thormølensgate 49B, Bergen, Norway 4Gothenburg Global Biodiversity Centre, Department of Marine Sciences, University of Gothenburg, Box 463, 40530 Gothenburg, Sweden (Received 19 January 2017; accepted 4 July 2017; published online 25 September 2017) The Clarion-Clipperton Zone (CCZ) in the East Pacific is a vast region targeted for deep-sea mineral exploration, for which there are almost no published taxonomic data. -
Effects of Suspended Sediments on the Sponge Holobiont with Implications
www.nature.com/scientificreports OPEN Effects of suspended sediments on the sponge holobiont with implications for dredging Received: 22 September 2016 Accepted: 26 May 2017 management Published: xx xx xxxx Mari-Carmen Pineda 1,2, Brian Strehlow1,2,3, Miriam Sternel4, Alan Duckworth1,2, Ross Jones1,2 & Nicole S. Webster 1,2 Dredging can cause high suspended sediment concentrations (SSC) in the water column, posing a hazard to filter feeding organisms like sponges as sediment may clog their aquiferous systems and reduce feeding. In order to provide pressure−response values for sponges to SSC and tease apart the cause:effect pathways of dredging pressures, five heterotrophic and phototrophic species were experimentally exposed to a range of dredging-relevant SSC of up to 100 mg L−1, with light compensation across treatments to ensure that SSC was the primary physical parameter. This study shows that some sponge species exposed to high SSC (≥23 mg L−1) for extended periods (28 d) have lower survival, increased necrosis and depletion of energy reserves. In contrast, SSC of ≤10 mg L−1 caused few, if any, negative effects and is thus suggested as a prudent sub-lethal threshold for sponges. Microbial communities did not change significantly among SSC treatments, although a nutritional shift from mixotrophy towards increased phototrophy was detected for some sponge species exposed to high SSC. Importantly however, it is expected that the combined effect of SSC with low light availability and sediment smothering as occurs during dredging operations will increase the negative effects on sponges. Dredging is an essential part of all port operations and the need for dredging is likely to increase with the current trend towards larger ships with deeper draft requirements1. -
Demosponge Steroid Biomarker 26-Methylstigmastane Provides Evidence for Neoproterozoic Animals
ARTICLES https://doi.org/10.1038/s41559-018-0676-2 Demosponge steroid biomarker 26-methylstigmastane provides evidence for Neoproterozoic animals J. Alex Zumberge1, Gordon D. Love 1*, Paco Cárdenas 2, Erik A. Sperling3, Sunithi Gunasekera2, Megan Rohrssen4, Emmanuelle Grosjean5, John P. Grotzinger6 and Roger E. Summons7 Sterane biomarkers preserved in ancient sedimentary rocks hold promise for tracking the diversification and ecological expan- sion of eukaryotes. The earliest proposed animal biomarkers from demosponges (Demospongiae) are recorded in a sequence around 100 Myr long of Neoproterozoic–Cambrian marine sedimentary strata from the Huqf Supergroup, South Oman Salt Basin. This C30 sterane biomarker, informally known as 24-isopropylcholestane (24-ipc), possesses the same carbon skeleton as sterols found in some modern-day demosponges. However, this evidence is controversial because 24-ipc is not exclusive to demosponges since 24-ipc sterols are found in trace amounts in some pelagophyte algae. Here, we report a new fossil sterane biomarker that co-occurs with 24-ipc in a suite of late Neoproterozoic–Cambrian sedimentary rocks and oils, which possesses a rare hydrocarbon skeleton that is uniquely found within extant demosponge taxa. This sterane is informally designated as 26-methylstigmastane (26-mes), reflecting the very unusual methylation at the terminus of the steroid side chain. It is the first animal-specific sterane marker detected in the geological record that can be unambiguously linked to precursor sterols only reported from extant demosponges. These new findings strongly suggest that demosponges, and hence multicellular animals, were prominent in some late Neoproterozoic marine environments at least extending back to the Cryogenian period.