Climate Change and Tropical Sponges
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Functional Equivalence and Evolutionary Convergence In
Functional equivalence and evolutionary convergence PNAS PLUS in complex communities of microbial sponge symbionts Lu Fana,b, David Reynoldsa,b, Michael Liua,b, Manuel Starkc,d, Staffan Kjelleberga,b,e, Nicole S. Websterf, and Torsten Thomasa,b,1 aSchool of Biotechnology and Biomolecular Sciences and bCentre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales 2052, Australia; cInstitute of Molecular Life Sciences and dSwiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland; eSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Republic of Singapore; and fAustralian Institute of Marine Science, Townsville, Queensland 4810, Australia Edited by W. Ford Doolittle, Dalhousie University, Halifax, NS, Canada, and approved May 21, 2012 (received for review February 24, 2012) Microorganisms often form symbiotic relationships with eukar- ties (11, 12). Symbionts also can be transmitted vertically through yotes, and the complexity of these relationships can range from reproductive cells and larvae, as has been demonstrated in those with one single dominant symbiont to associations with sponges (13, 14), insects (15), ascidians (16), bivalves (17), and hundreds of symbiont species. Microbial symbionts occupying various other animals (18). Vertical transmission generally leads equivalent niches in different eukaryotic hosts may share func- to microbial communities with limited variation in taxonomy and tional aspects, and convergent genome evolution has been function among host individuals. reported for simple symbiont systems in insects. However, for Niches with similar selections may exist in phylogenetically complex symbiont communities, it is largely unknown how prev- divergent hosts that lead comparable lifestyles or have similar alent functional equivalence is and whether equivalent functions physiological properties. -
Implications for Dredging Management
www.nature.com/scientificreports OPEN Effects of light attenuation on the sponge holobiont- implications for dredging management Received: 08 June 2016 Mari-Carmen Pineda1,2, Brian Strehlow1,2,3, Alan Duckworth1,2, Jason Doyle1, Ross Jones1,2 & Accepted: 17 November 2016 Nicole S. Webster1,2 Published: 13 December 2016 Dredging and natural sediment resuspension events can cause high levels of turbidity, reducing the amount of light available for photosynthetic benthic biota. To determine how marine sponges respond to light attenuation, five species were experimentally exposed to a range of light treatments. Tolerance thresholds and capacity for recovery varied markedly amongst species. Whilst light attenuation had no effect on the heterotrophic speciesStylissa flabelliformis and Ianthella basta, the phototrophic species Cliona orientalis and Carteriospongia foliascens discoloured (bleached) over a 28 day exposure period to very low light (<0.8 mol photons m−2 d−1). In darkness, both species discoloured within a few days, concomitant with reduced fluorescence yields, chlorophyll concentrations and shifts in their associated microbiomes. The phototrophic species Cymbastela coralliophila was less impacted by light reduction. C. orientalis and C. coralliophila exhibited full recovery under normal light conditions, whilst C. foliascens did not recover and showed high levels of mortality. The light treatments used in the study are directly relevant to conditions that can occur in situ during dredging projects, indicating that light attenuation poses a risk to photosynthetic marine sponges. Examining benthic light levels over temporal scales would enable dredging proponents to be aware of conditions that could impact on sponge physiology. Sponges are filter-feeding organisms with important ecosystem roles including habitat provision, seawater filtra- tion, primary production and binding and/or erosion of the carbonate reef structure1. -
Effects of Dredging-Related Stressors on Sponges: Laboratory Experiments Mari-Carmen Pineda1,2, Brian Strehlow2,3, Alan Duckworth1,2, Nicole S
Effects of dredging-related stressors on sponges: laboratory experiments Mari-Carmen Pineda1,2, Brian Strehlow2,3, Alan Duckworth1,2, Nicole S. Webster1,2 1 Australian Institute of Marine Science, Townsville, Queensland, Australia 2 Western Australian Marine Science Institution, Perth, Western Australia, Australia 3 School of Plant Biology & Centre for Microscopy Characterisation and Analysis: University of Western Australia, Perth, Western Australia, Australia WAMSI Dredging Science Node Theme 6 Report Project 6.4 November 2017 Front cover images (L-R) Image 1: Trailing Suction Hopper Dredge Gateway in operation during the Fremantle Port Inner Harbour and Channel Deepening Project. (Source: OEPA) Image 2: AIMS scientist, Dr Mari-Carmen Pineda working on an experiment investigating the effects of suspended sediment on sponges. (Source: AIMS) Image 3: Dredge Plume at Barrow Island. Image produced with data from the Japan Aerospace Exploration Agency (JAXA) Advanced Land Observing Satellite (ALOS) taken on 29th August 2010. Image 4: Large tank experimental set-up at the National Sea Simulator (SeaSim), Australian Institute of Marine Science, for investigating the combined effects of light attenuation, turbidity and sediment smothering on sponges. (Source: AIMS) WAMSI Dredging Science Node The WAMSI Dredging Science Node is a strategic research initiative that evolved in response to uncertainties in the environmental impact assessment and management of large-scale dredging operations and coastal infrastructure developments. Its goal is to enhance capacity within government and the private sector to predict and manage the environmental impacts of dredging in Western Australia, delivered through a combination of reviews, field studies, laboratory experimentation, relationship testing and development of standardised protocols and guidance for impact prediction, monitoring and management. -
Collation and Validation of Museum Collection Databases Related to the Distribution of Marine Sponges in Northern Australia
1 COLLATION AND VALIDATION OF MUSEUM COLLECTION DATABASES RELATED TO THE DISTRIBUTION OF MARINE SPONGES IN NORTHERN AUSTRALIA. JOHN N.A. HOOPER & MERRICK EKINS 2 3 Collation and validation of museum collection databases related to the distribution of marine sponges in Northern Australia (Contract National Oceans Office C2004/020) John N.A. Hooper & Merrick Ekins Queensland Museum, PO Box 3300, South Brisbane, Queensland, 4101, Australia ([email protected], [email protected]) CONTENTS SUMMARY ......................................................................................................................... 6 1. INTRODUCTION ......................................................................................................... 10 1.1. General Introduction ..................................................................................... 10 1.2. Definitions of Australia’s marine bioregions ............................................... 12 2. MATERIALS & METHODS ....................................................................................... 16 2.1. Specimen point-data conversion ................................................................... 16 2.2. Geographic coverage and scales of analysis................................................. 18 2.3. Species distributions....................................................................................... 19 2.4. Modelled distribution datasets and historical sponge data ........................ 20 2.5. Identification of useful datasets and gaps in data, prioritised -
Description of Key Species Groups in the East Marine Region
Australian Museum Description of Key Species Groups in the East Marine Region Final Report – September 2007 1 Table of Contents Acronyms........................................................................................................................................ 3 List of Images ................................................................................................................................. 4 Acknowledgements ....................................................................................................................... 5 1 Introduction............................................................................................................................ 6 2 Corals (Scleractinia)............................................................................................................ 12 3 Crustacea ............................................................................................................................. 24 4 Demersal Teleost Fish ........................................................................................................ 54 5 Echinodermata..................................................................................................................... 66 6 Marine Snakes ..................................................................................................................... 80 7 Marine Turtles...................................................................................................................... 95 8 Molluscs ............................................................................................................................ -
© the Authors 2019. All Rights Reserved
© The Authors 2019. All rights reserved. www.publish.csiro.au Index Note: Bold page numbers refer to illustrations. abalones 348 tenella 77 Acanthaster 134, 365, 367, 393 tenuis 272 mauritiensis 134, 135 white syndrome 152 planci 134 Acroporidae 136, 274–5, 276 solaris 367 Acrozoanthus australiae 264, 265 cf. solaris 134, 135, 144, 165, 270, 275, 339, 345, 366 acrozooid polyps 287 sp. A nomen nudum 134 Actaeomorpha 337 Acanthaster outbreaks 134–5 scruposa 335 causes 134–5, 144–6, 163–4, 165, 367 Acteonidae 349 management 135 Actinaria 257, 259–63 see also crown-of-thorns starfish (COTS) outbreaks anatomical features 258 Acanthasteridae 367 cnidae types in 260 Acanthastrea echinata 279 Actiniidae 263 Acanthella cavernosa 236, 238 Actinocyclidae 349 Acanthochitonidae 349 Actinodendron glomeratum 261 Acanthogorgia 302, 306 Actinopyga 369, 370 sp. 302 echinites 372 Acanthogorgiidae 302 miliaris 372 Acanthopargus spp. 126 sp. 372 Acanthopleura gemmata 107, 110 Aegiceras corniculatum 221, 222, 223 Acanthuridae 390, 396 Aegiridae 349 Acanthurus aeolid nudibranchs 346, 347, 349 blochii 396 Aeolidiidae 349 lineatus 395, 396 Aequorea 202 mata 393 Afrocucumis africana 368, 370 olivaceus 395 Agariciidae 275, 276 Acartia sp. 192 Agelas axifera 236, 238 accessory pigments 89 aggressive mimicry 401 Acetes 333 Agjajidae 349 sp. 192 agricultural activities, sediments and nutrients from 161–5 Achelata 333, 334–6 Ailsastra sp. 368 acorn barnacles 328 Aiptasia pulchella 260 acorn dog whelk 346, 347 Aipysurus 415, 416 Acropora 31, 33, 59, 135, 136, 150, 184, 211, 272, 273, 274–5, 339 duboisii 412, 413, 415 brown band disease 152 laevis 412, 413, 415, 416 clathrata 79 mosaicus 415 echinata 276 Alcyonacea 67, 283, 290–309 global diversity 186 Alcyonidium sp. -
Functional Equivalence and Evolutionary Convergence in Complex Communities of Microbial Sponge Symbionts
Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts Lu Fana,b, David Reynoldsa,b, Michael Liua,b, Manuel Starkc,d, Staffan Kjelleberga,b,e, Nicole S. Websterf, and Torsten Thomasa,b,1 aSchool of Biotechnology and Biomolecular Sciences and bCentre for Marine Bio-Innovation, University of New South Wales, Sydney, New South Wales 2052, Australia; cInstitute of Molecular Life Sciences and dSwiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland; eSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Republic of Singapore; and fAustralian Institute of Marine Science, Townsville, Queensland 4810, Australia Edited by W. Ford Doolittle, Dalhousie University, Halifax, NS, Canada, and approved May 21, 2012 (received for review February 24, 2012) Microorganisms often form symbiotic relationships with eukar- ties (11, 12). Symbionts also can be transmitted vertically through yotes, and the complexity of these relationships can range from reproductive cells and larvae, as has been demonstrated in those with one single dominant symbiont to associations with sponges (13, 14), insects (15), ascidians (16), bivalves (17), and hundreds of symbiont species. Microbial symbionts occupying various other animals (18). Vertical transmission generally leads equivalent niches in different eukaryotic hosts may share func- to microbial communities with limited variation in taxonomy and tional aspects, and convergent genome evolution has been function among host individuals. reported for simple symbiont systems in insects. However, for Niches with similar selections may exist in phylogenetically complex symbiont communities, it is largely unknown how prev- divergent hosts that lead comparable lifestyles or have similar alent functional equivalence is and whether equivalent functions physiological properties. -
Researchonline@JCU
ResearchOnline@JCU This file is part of the following work: Ramsby, Blake Donald (2018) The effects of a changing marine environment on the bioeroding sponge Cliona orientalis. PhD Thesis, James Cook University. Access to this file is available from: https://doi.org/10.25903/5d478ac335ad6 Copyright © 2018 Blake Donald Ramsby. The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owners of any third party copyright material included in this document. If you believe that this is not the case, please email [email protected] The effects of a changing marine environment on the bioeroding sponge Cliona orientalis Thesis submitted by Blake Donald Ramsby in July 2018 for the degree of Doctor of Philosophy College of Science and Engineering James Cook University, Townsville, Queensland Statement of contribution of others Assistance Contribution Contributor Intellectual support Writing and editing Nicole Webster Mia Hoogenboom Steve Whalan Statistical support Murray Logan Patricia Menendez Financial support Stipend AIMS@JCU Research AIMS@JCU ARC Future Fellowship (NW)AIMS Travel AIMS@JCU ARC Centre of Excellence in Coral Reef Studies Research assistance Field work Cecilia Pascelli Marija Kupresanin Steve Whalan Heidi Luter SeaSim staff AIMS inshore monitoring team Lab work SeaSim staff AIMS Analytical Services Hillary Smith Joshua Heishman Sonia Klein Svenja Julica Andi Francesca Sharisse Ockwell i Authorship declaration of published thesis chapters Thesis title: The effects of a changing marine environment on the bioeroding sponge Cliona orientalis Name of candidate: Blake Ramsby (12910725) Chapter Publication reference Intellectual input of I confirm the each author candidate’s contribution to this paper and consent to the inclusion of the paper in this thesis. -
Porifera: Demospongiae) from the Temperate Eastern Pacific
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.11.246710; this version posted April 22, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Four new Scopalina from Southern California: the first Scopalinida (Porifera: Demospongiae) from the temperate Eastern Pacific THOMAS L. TURNER Ecology, Evolution, and Marine Biology Department University of California, Santa Barbara Santa Barbara, CA 93106 [email protected] ORCiD: 0000-0002-1380-1099 Abstract Sponges (phylum Porifera) are common inhabitants of kelp forest ecosystems in California, but their diversity and ecological importance are poorly characterized in this biome. Here I use freshly collected samples to describe the diversity of the order Scopalinida in California. Though previously unknown in the region, four new species are described here: Scopalina nausicae sp. nov., S. kuyamu sp. nov., S. goletensis sp. nov., and S. jali sp. nov.. These discoveries illustrate the considerable uncharacterized sponge diversity remaining in California kelp forests, and the utility of SCUBA-based collection to improve our understanding of this diversity. Introduction The order Scopalinida is young: it was created in 2015 (Morrow & Cárdenas 2015). The independent evolution of this lineage, however, is old. Phylogenies based on ribosomal DNA place the order, together with the freshwater sponges, as the sister clade to all other extant orders in the subclass Heteroscleromopha (Morrow et al. 2013). This interesting phylogenetic position motivates further investigation of this group. -
Phylogenetic Diversity, Functional Convergence, and Stress Response of the Symbiotic System Between Sponges and Microorganisms
Phylogenetic Diversity, Functional Convergence, and Stress Response of the Symbiotic System Between Sponges and Microorganisms Lu Fan A thesis submitted to the University of New South Wales for the degree of Doctor of Philosophy April 2012 Abstract All living multicellular organisms contain associated microorganisms, which often make substantial symbiotic contributions to host physiology, behaviors and evolution. Marine sponges host dense and highly diverse communities of symbiotic microorganisms. These symbionts are assembled in stable and host-specific community structures and are often inherited through the sponge’s generations. Previous investigations have provided a good understanding of the phylogenetic diversity of microbial symbionts in marine sponges. However the functional features that underpin their symbiotic interactions are largely unknown. This thesis uses sponges as models to address fundamental concepts of microbial symbiosis, including community diversity and assembly, metabolic interactions with the host and other symbionts, as well as symbiosis stability under perturbations. State-of-the-art techniques including 16S rRNA gene pyro-tag-sequencing, metagenomics and metaproteomics were applied. Specifically, a pipeline was developed to reconstruct full-length ribosomal rRNA genes from pyrosequencing metagenomic shotgun data. This work showed that a substantial proportion of microbial diversity has been typically missed by the PCR-based approaches. Detailed metagenomic analyses then identified the functional core in symbiont communities from taxonomically distinct sponge species. The result indicated that common functions were provided by distinct but functionally equivalent symbionts and enzymes in different sponge hosts. Moreover, the abundant elements involved in horizontal gene transfer suggested their key roles in distributing core functions between co-evolutionary symbionts and in facilitating functional convergence on the community scale. -
10Th World Sponge Conference
10th World Sponge Conference NUI Galway 25-30 June 2017 Cover photographs - Bernard Picton. South Africa, 2008. Cover photographs - Bernard Picton. South CAMPUS MAP Áras na Mac Léinn and Bailey Allen Hall 1 The Quadrangle Accessible Route Across Campus (for the mobility 2 Áras na Gaeilge impaired) To Galway City 3 The Hardiman Building IT Building 4 Arts Millennium Building Cafés, restaurants and bars 5 Sports Centre A An Bhialann Cathedral 6 Arts / Science Building B Smokey Joe’s Café D 7 IT Building Martin Ryan Building C 8 10 8 Orbsen Building River D 9 9 Student Information Desk College Bar 7 12 Corrib (SID) / Áras Uí Chathail E Zinc Café C 10 Áras na Mac Léinn F 11 and Bailey Allen Hall Friars Restaurant Arts / Science Building 11 Human Biology Building 13 (under construction) Q Engineering Building U D I 12 Bank of Ireland Theatre N River A C O E R Corrib N 13 Martin Ryan Building 10th WSC Y T T I E B S N 14 Áras Moyola R N 2 E I V A I N 15 J.E. Cairnes School of L 6 U B A 3 Business and Economics R I D 16 Corrib Village Áras Moyola G E University Road (Student Accommodation) Entrance 17 Institute of Lifecourse and Society 18 Park and Ride 1 D 4 I S 19 Engineering Building T I LL E R 5 Y R O A NEWCA Under Construction D STL E ROAD Please excuse our temporary appearance. The Hardiman Building Institute of Lifecourse and Society 19 AD E O R LE ST 14 CA EW N Arts Millennium Building Newcastle Road 15 Entrance 16 F P&R 18 17 J.E. -
The Sponge Holobiont in a Changing Ocean: from Microbes to Ecosystems L
Pita et al. Microbiome (2018) 6:46 https://doi.org/10.1186/s40168-018-0428-1 REVIEW Open Access The sponge holobiont in a changing ocean: from microbes to ecosystems L. Pita1*† , L. Rix1† , B. M. Slaby1 , A. Franke1 and U. Hentschel1,2 Abstract The recognition that all macroorganisms live in symbiotic association with microbial communities has opened up a new field in biology. Animals, plants, and algae are now considered holobionts, complex ecosystems consisting of the host, the microbiota, and the interactions among them. Accordingly, ecological concepts can be applied to understand the host-derived and microbial processes that govern the dynamics of the interactive networks within the holobiont. In marine systems, holobionts are further integrated into larger and more complex communities and ecosystems, a concept referred to as “nested ecosystems.” In this review, we discuss the concept of holobionts as dynamic ecosystems that interact at multiple scales and respond to environmental change. We focus on the symbiosis of sponges with their microbial communities—a symbiosis that has resulted in one of the most diverse and complex holobionts in the marine environment. In recent years, the field of sponge microbiology has remarkably advanced in terms of curated databases, standardized protocols, and information on the functions of the microbiota. Like a Russian doll, these microbial processes are translated into sponge holobiont functions that impact the surrounding ecosystem. For example, the sponge-associated microbial metabolisms, fueled by the high filtering capacity of the sponge host, substantially affect the biogeochemical cycling of key nutrients like carbon, nitrogen, and phosphorous. Since sponge holobionts are increasingly threatened by anthropogenic stressors that jeopardize the stability of the holobiont ecosystem, we discuss the link between environmental perturbations, dysbiosis, and sponge diseases.