PUBLICATIONS

As of April 2012; 13 Book chapters, 16 invited reviews and 137 peer reviewed journal articles. Note: Morgan and Morgan-Ryan = Ryan

Chapters in Books

1 Thompson, R. C. A., Lymbery, A. J., Meloni, B. P., Morgan, U. M., Binz, N., Constantine, C. C. and Hopkins, R. M. (1994). Molecular epidemiology of parasite infections. In: Biology of Parasitism (R. Erlich and A Nieto eds.). pp. 167-185. Ediciones Trilace, Montevideo-Uruguay. 2 Morgan, U. M. and R.C. A. Thompson. (2000). Diagnosis. In: The Molecular epidemiology of Infectious Diseases. (ed R.C.A. Thompson). Arnold, Oxford. p.30-44. 3 Thompson, R. C. A. and Morgan, U. M. (1999). Molecular epidemiology: Applications to current and emerging problems of infectious disease. In: The Molecular epidemiology of Infectious Diseases. (ed R.C.A. Thompson). Arnold, Oxford. p.1-4. 4 Thompson, R. C. A., Morgan, U. M., Hopkins, R. M. and Pallant, L. J. (2000). Enteric protozoan infections. In: The Molecular epidemiology of Infectious Diseases. (ed R.C.A. Thompson). Arnold, Oxford. p. 194-209. 5 Morgan, U. M, Xiao, L., Fayer, R., Lal, A. A and R.C. A. Thompson. (2000). Epidemiology and Strain variation of parvum. In: and Microsporidiosis. Contributions to Microbiology. Vol.6. (ed. F. Petry). Karger, Basel. p116-139. 6 Morgan, U. M, Xiao, L., Fayer, R., Lal, A. A and R.C. A. Thompson. (2001). Molecular epidemiology and systematics of Cryptosporidium parvum. In Cryptosporidium – the analytical challenge. (ed. M. Smith and K.C. Thompson). Royal Society of Chemistry, Cambridge, UK. p.44-50. 7 Ryan, U. M. 2003. Molecular Characterisation and Taxonomy of Cryptosporidium. In Cryptosporidium – from Molecules to Disease. (ed. Thompson, R. C. A., Armson, A and Ryan, U). Elsevier, Ireland. 8 Lowery, C. J., Xiao, L., Ryan, U. M., Dooley, J. S., Millar, B. C. and Moore, J. E. 2005. Molecular Biology Methods for Detection and Identification of Cryptosporidium Species in Feces, Water, and Shellfish. In: Methods in Biotechnology, Vol. 21: Food- Borne Pathogens: Methods and Protocols (ed. C.C. Adley). Humana Press Inc., Totowa, NJ. pp 203-214. 9 Ryan, U.M. and Xiao, L. 2008. Avian Cryptosporidosis. In: Cryptosporidium and Cryptosporidiosis. (ed R. Fayer and L. Xiao). CRC Press, Taylor and Francis Group, Boca Raton. pp 395-418. 10 Xiao, L. and Ryan, U.M. 2008. Molecular typing and distribution. In: Cryptosporidium and Cryptosporidiosis. (ed R. Fayer and L. Xiao). CRC Press, Taylor and Francis Group, Boca Raton. pp 119-172. 11 Ryan, U.M. and Xiao, L. 2009. Molecular epidemiology and typing of non-human isolates of Cryptosporidium. In: Giardia and Cryptosporidium – from molecules to disease. CABI publishing, Oxfordshire, UK. pp 65-80. 12 Ryan, U.M. and Caccio, S. 2009. Cryptosporidiosis. In: Molecular detection of foodborne pathogens. (ed, D. Liu). CRC Press, Boca Raton, FL, USA. pp. 651-666. 13 Ryan, U.M. and Yang, R. 2011. Cryptosporidium. In: Molecular detection of human parasitic pathogens. (ed, D. Liu). Taylor and Francis, UK. ISBN 9781439812426. In press.

Citations Impact Invited Reviews Factor

1 Morgan, U. M., Constantine, C. C. and Thompson, R. C. A. 13 4.940 (1997). Is Cryptosporidium clonal? Parasitology Today. 13, 488. 2 Morgan, U. M. and Thompson, R. C. A. (1998). PCR Detection 37 4.940 of Cryptosporidium : the way forward?. Parasitology Today 14, 241-244. 3 Morgan, U. M. and Thompson, R. C. A. (1998). PCR Detection 2 4.940 of Cryptosporidium : Addendum. Parasitology Today 14, 469. 4 Morgan, U. M and R. C. A. Thompson. (1999). Molecular 19 1.868 Detection of Parasitic Protozoa. Parasitology. 117: S73-S85. 5 Thompson, R. C. A., Constantine, C. C. and Morgan, U. M. 11 1.868 (1999). Overview and significance of molecular methods: what role for molecular epidemiology? Parasitology. 117: S161- S175. 6 Morgan, U. M, Xiao, L., Fayer, R., Lal, A. A. and R.C. A. 114 3.092 Thompson (1999). Variation in Cryptosporidium: Towards a taxonomic revision of the genus. International Journal of Parasitology. 29, 1733-1751. 7 Xiao, L., Morgan, U. M., Fayer, R., Thompson, R. C. A. and 101 4.940 Lal, A. A. (2000). Cryptosporidium Systematics and Implications for Public Health. Parasitology Today. 16: 287- 292. 8 Fayer, R. Morgan, U. M. and Upton, S. J. (2000). 351 3.34 Epidemiology of Cryptosporidium: transmission, detection and identification. International Journal for Parasitology. Special Issue. 30: 1305-1321. 9 Morgan, U. M. (2000). Detection and characterisation of 11 3.092 parasites causing emerging zoonoses. International Journal for Parasitology. Special Issue. 30: 1407-1422. 10 Xiao, L., Fayer, R., Ryan, U. and Upton, S. J. 2004. Cryptosporidium taxonomy: recent advances and implications 281 13.194 for public health. Clinical Microbiology Reviews. 17: 72-97. 11 Xiao, L and Ryan, U. 2004. Cryptosporidiosis: an update in molecular epidemiology. Current Opinion in Infectious 123 4.79 Diseases. 17:483-490. 12 Smith, N.C., Tilley, L., Thompson, R.C., Ryan, U.M., Loukas, 5 A., Jenkins, D., and McFadden, G.I. 2006. An Australian 5.283 network to support the understanding and control of parasites. Trends in Parasitol. 22:97-9. 13 Xiao L., Fayer R., Ryan U., and Upton S.J. 2007. Response to the newly proposed species Cryptosporidium pestis. Trends in Parasitology, 23:41-42. 14 Caccio, S., and Ryan, U. 2008. Molecular epidemiology of 22 2.896 giardiasis. Molecular and Biochemical Parasitology. 160:75-80. 15 Ryan, U. 2010. Cryptosporidium in birds, fish and amphibians. 5 1.108 Experimental Parasitology. 124:113-20. 16 Xiao, L., Ryan, U.M., Fayer, R., Bowman, D.D., Zhang, L. 2012. Cryptosporidium tyzzeri and Cryptosporidium pestis: Which name is valid? Experimental Parasitology. 130(3):308-9

Citations Impact Refereed Journals factor 1 Morgan, U. M., Reynoldson, J. A. and Thompson, R. C. A. 46 3.969 (1993). Activities of Several Benzimidazoles and Tubulin Inhibitors against Giardia spp. In Vitro. Antimicrobial Agents and Chemotherapy. 37, 328-331. 2 Morgan, U. M., Constantine, C. C., Greene, W. K. and 32 1.724 Thompson, R. C. A. (1993). RAPD (random amplified polymorphic DNA) analysis of Giardia DNA and correlation with isoenzyme data. Transactions of the Royal Society of Tropical Medicine and Hygiene. 87, 702-705. 3 Eckert, J., Thompson, R. C. A., Lymbery, A. J., Pawlowski, Z. 33 0.84 S., Gottstein, B., Morgan, U. M. (1993). Further evidence for the occurrence of a distinct strain of Echinococcus granulosus in European pigs. Parasitological Research. 79, 42-48. 4 Morgan, U. M., Constantine, C. C., O’Donoghue, P. Meloni, B. 105 1.932 P., O’Brien, P. A. and Thompson, R. C. A. (1995). Molecular characterisation of Cryptosporidium isolates from humans and other animals using RAPD (Random Amplified Polymorphic DNA) Analysis. American Journal of Tropical Medicine and Hygiene. 52, 559-564. 5 Morgan, U. M., O'Brien, P. A. and Thompson, R. C. A. (1996). 30 2.709 The development of diagnostic PCR primers for Cryptosporidium using RAPD-PCR. Molecular and Biochemical Parasitology. 77, 103-108. 6 McRoberts, K. M., Meloni, B. P., Morgan, U. M., Marano, R., 17 1.485 Binz, N., Erlandsen, S. L., Halse, S. A. and Thompson, R. C. A. (1996). Morphological and molecular characterisation of Giardia isolated from the straw-necked Ibis (Threskiornis spinicillis) in Western Australia. Journal of Parasitology. 82, 711-718. 7 Morgan, U. M., Constantine, C. C., Forbes, D. A. and 178 1.485 Thompson, R. C. A. (1997). Differentiation between human and animal isolates of Cryptosporidium parvum using rDNA Sequencing and direct PCR analysis. Journal of Parasitology. 83, 825-830. 8 Morgan, U.M., Pallant, L, Dwyer, B.W., Forbes, D.A., Rich, G. 86 3.67 and Thompson, R.C.A. (1998). Comparison of PCR and Microscopy for detection of Cryptosporidium in human fecal samples: Clinical trial. Journal of Clinical Microbiology. 36, 995-998. 9 Sargent, K. D., Morgan, U. M., Elliot, A. and R.C.A. 50 1.58 Thompson. (1998). Morphological and Genetic characterisation of Cryptosporidium oocysts from domestic cats. Veterinary Parasitology. 77, 221-227. 10 Morgan, U. M., Sargent, K. D, Deplazes, P., Forbes, D.A., 100 1.868 Spano, F., Hertzberg H., Elliot, A. and R. C. A. Thompson. (1998). Molecular Characterisation of Cryptosporidium from various hosts. Parasitology. 117, 31-37. 11 Morgan, U. M., Sargent, K. D., Elliot, A. and R. C. A. 22 1.58 Thompson. (1998). Cryptosporidium in cats - additional evidence for C. felis. The Veterinary Journal 15, 159-161. 12 Morgan, U. M. and R. C. A. Thompson. (1998). Molecular 12 0.779 epidemiology of Cryptosporidium parvum. European Journal of Protistology. 24, 262-266. 13 Spano, F., Putignani, L., Crisanti, A., Sallicandro, P., Morgan, 98 3.67 U. M., Le Blancq, S. M., Tchack, L., Tzipori, S. and Widmer, G. (1998). A multilocus genotypic analysis of Cryptosporidium parvum from different hosts and geographical origin. Journal of Clinical Microbiology. 36, 3255-3259. 14 Morgan, U.M., Sargent, K.D, Deplazes, P., Forbes, D.A., 57 1.868 Spano, F., Hertzberg H., Elliot, A. and R.C.A. Thompson. (1999). Sequence and PCR-RFLP analysis of the internal transcribed spacers of the rDNA repeat unit in isolates of Cryptosporidium from different hosts. Parasitology. 118, 49-58. 15 Morgan, U. M., Buddle, R., Armson, A and R. C. A. 42 0.514 Thompson. (1999). Molecular and biological characterisation of Cryptosporidium in pigs. Australian Veterinary Journal. 77, 44- 47. 16 Morgan, U. M. and Thompson, R. C. A. (1999). The 3 4.940 importance of genotyping isolates before assigning species Parasitology Today. 15, 80-81. 17 Elliot, A., Morgan, U.M. and R.C.A. Thompson. (1999). 29 0.74 Improved staining method for detecting Cryptosporidium oocysts in stools using Malachite Green. Journal of General and Applied Microbiology. 45, 139-142. 18 Morgan, U. M., Singleton, G., Sturdee, A.P., Gomez, M. S., 39 3.67 Gracenea, M., Torres, J., Hamilton, S. G., Woodside, D. P. and Thompson, R.C.A. (1999). The Cryptosporidium 'mouse' genotype is conserved across geographic areas. Journal of Clinical Microbiology. 37, 1302-1305. 19 Morgan, U. M., Monis, P., Fayer, R., Deplazes, P. and R.C. A. 57 1.485 Thompson. (1999). Phylogenetic relationships amongst isolates of Cryptosporidium: evidence for several new species. Journal of Parasitology. 85, 1126-1133. 20 Xiao, L., Morgan, U., Limor, J., Escalante, A., Arrowood, M., 221 4.004 Schulaw, W., Thompson, R.C.A., Fayer, R., Lal, A.A. (1999). Genetic Diversity within Cryptosporidium parvum and Related Cryptosporidium Species. Applied and Environmental Microbiology. 65, 3386-3391. 21 Morgan, U. M. and R. C. A. Thompson. (1999). Identification of Cryptosporidium using DNA methods. Water. 26, 9 –10. 22 Morgan, U. M., Xiao, L., Fayer, R., Graczyk, T.K., Lal, A. A., 20 1.485 Deplazes, P. and R. C. A. Thompson. (1999). Phylogenetic analysis of Cryptosporidium isolates from captive reptiles using18S rDNA sequence data and Random Amplified Polymorphic DNA analysis. Journal of Parasitology. 85, 525- 530. 23 Graczyk, T. K., Thompson, R. C. A., Fayer, R., Adams, P., 33 1.932 Morgan, U. M. and Lewis, E. J. (1999). Giardia duodenalis cysts of genotype A recovered from clams in the Chesapeake bay, Rhode river. American Journal of Tropical Medicine and Hygiene. 61, 526-9. 24 Morgan, U.M., Xiao, L., Sulaiman, I., Weber, R., Lal, A.A., 17 2.28 Thompson, R.C.A., and Deplazes, P. (1999). Which genotypes/species of Cryptosporidium are humans susceptible to? Journal of Eukaryotic Microbiology. 46, 42S-43S 25 Xiao, L., Limor, J., Morgan, U. M., Thompson R. C. A., Fayer 22 2.28 R, and Lal, A. (1999). Presence of heterogenous copies of the small subunit rRNA gene in the Cryptosporidium parvum human and marsupial genotypes and Cryptosporidium felis. Journal of Eukaryotic Microbiology. 46, 44S-45S. 26 Irwin, P. J., Yeoh, E. C. and Morgan, U. M. (1999) Tick fever: Canine babesiosis and ehrlichiosis in Southeast Asia. Singapore Veterinary Journal: 22, 1-11. 27 Khramtsov, N.V., Chung, P.A., Dykstra, C.C., Griffiths, J.K., 22 1.485 Morgan, U.M., Arrowood, M.J. and Upton, S.J. (2000). Presence of dsRNAs in human and calf isolates of Cryptosporidium parvum. Journal of Parasitology. 86, 275-282. 28 Morgan, U. M., Weber, R. Xiao, L., Sulaiman, I., Thompson, 154 3.4 R. C. A., Ndiritu, W., Lal, A. A., Moore, A. and Deplazes, P. (2000). Molecular characterisation of Cryptosporidium isolates obtained from HIV-infected individuals living in Switzerland, Kenya and the USA. Journal of Clinical Microbiology. 38, 1180-1183. 29 Morgan, U. M., Xiao, L., Monis, P., Sulaiman, I., Pavlasek, I., 31 1.868 Blagburn, B., Olsen, M., Lal, A. and Thompson, R. C. A. (2000). Molecular and Phylogenetic analysis of Cryptosporidium muris from various hosts. Parasitology. 120, 457-464. 30 Morgan, U. M., Xiao, L., Limor, J., Gelis, S., Raidal, S., Fayer, 21 0.514 R., Lal, A., Elliot, A. and Thompson, R. C. A. (2000). Cryptosporidium meleagridis in an Indian ring-necked parrot (Psittacula krameri). Australian Veterinary Journal. 78, 182- 183. 31 Morgan, U. M., Xiao, L., Monis, P., Fall, A., Irwin, P. J., 33 4.004 Fayer, R., Denholm, K., Limor, J., Lal, A., and Thompson, R. C. A. (2000). Cryptosporidium in domestic dogs – the ‘dog’ genotype. Applied and Environmental Microbiology. 66, 2220- 2223. 32 Lindsay, D. S., Upton, S. J., Owens, D. S., Morgan, U. M., Mead, J. R. and Blagburn, B. L. (2000). Cryptosporidium 137 2.28 andersoni n. sp. (: Cryptosporiidae) from Cattle, Bos taurus. Journal of Eukaryotic Microbiology. 47, 91-95. 33 Morgan, U. M., Xiao, L., Hill, B. D., O'Donoghue, P., Limor, 45 1.868 J., Lal, A. A. and Thompson, R. C. A. (2000). Detection of the Cryptosporidium parvum ‘human’ genotype in a Dugong (Dugong dugon). Journal of Parasitology 86: 1352-1354. 34 Sulaiman, I. M., Morgan, U. M., Thompson, R. C. A., Lal, A. 100 4.004 A. and Xiao, L. (2000). Phylogenetic relationships of Cryptosporidium parasites based on the heat shock protein (HSP70) gene. Applied and Environmental Microbiology. 66, 2385-2391. 35 Xiao, L.H, Limor, J, Morgan, U.M., Sulaiman, I.M, Thompson, 69 4.004 R.A.C, Lal, A.A. (2000). Sequence differences in the diagnostic target region of the oocyst wall protein gene of Cryptosporidium parasites. Applied and Environmental Microbiology. 66, 5499-5502. 36 Denholm, K. D., Haitjema, H., Irwin, P. J., Morgan, U. M. and 9 0.514 Gwyne, B. J. (2001). Concurrent Cryptosporidium and parvovirus infections in a puppy. Australian Veterinary Journal. 79, 98-101. 37 Morgan, U. M., Monis, P., Xiao, L., Limor, J., Raidal, S., 76 3.092 O'Donoghue, P., Gasser, R., Murray, A. Fayer, R., Blagburn, B., Lal, A. A. and Thompson, R. C. A. (2001). Molecular and phylogenetic characterisation of Cryptosporidium from birds. International Journal for Parasitology. 31, 289-296. 38 Gasser, R., Zhu, X., Caccio, S., Chalmers, R., Widmer, G., 30 4.325 Morgan, U., Thompson, R.C.A., Pozio, E., Browning, G. (2001). Genotyping Cryptosporidium parvum by single-strand conformation polymorphism analysis of ribosomal and heat shock gene regions. Electrophoresis. 22: 433-437. 39 Fayer, R., Trout, J. M., Xiao, L., Morgan, U. M., Lal A. A. and 95 1.485 Dubey J. P. 2001. Cryptosporidium canis n. sp from domestic dogs. Journal of Parasitology. 87: 1415-1422. 40 Hawkins, P., Swanson, P. and Morgan, U. (2001). Genotypes 4 of Cryptosporidium in Sydney’s catchments. Water. 28: 38-41. 41 Hijjawi, N.S., Meloni, B.P., Morgan, U. M., Thompson, R.C. 57 3.092 (2001). Complete development and long-term maintenance of Cryptosporidium parvum human and cattle genotypes in cell culture. International Journal for Parasitology. 31:1048-1055. 42 Menon, B. S., Md.Shukri Abdullah, Mahamud F, Morgan U. 3 M, Malik, A. S, Choo, K. E. and Singh, B. (2001). Low prevalence of Cryptosporidium parvum in hospitalised children in Kota Bharu, Malaysia. Southeast Asian Journal of Tropical Medicine and Public Health. 32: 319-322. 43 Glaberman, S., Sulaiman, I. M., Bern, C., Limor, J., Peng, M., 9 2.28 Morgan U., Gilman, R., Lal, A. A. and Xiao, L. (2001). A multilocus genotypic analysis of Cryptosporidium meleagridis. Journal of Eukaryotic Microbiology. (Suppl S):19S-22S. 44 Morgan-Ryan, U. M., Monis, P., Possenti, A., Crisanti, A. and 1 0.17 Spano, F. 2001. Cloning and phylogenetic analysis of the ribosomal internal transcribed spacer-1 (ITS1) of Cryptosporidium wrairi and its relationship to C. parvum genotypes. Parassitologia. 43:159-63. 45 Macnish, M. G., Morgan, U. M., Behnke, J. M. and Thompson, 6 0.564 R. C. A. (2002). Failure to infect laboratory rodent hosts with human isolates Rodentolepis (=Hymenolepis) nana. Journal of Helminthology. 76:37-43. 46 Heitman, T. L., Frederick, L. M., Viste, J. R., Guselle, N. J., 51 1.072 Morgan, U. M., Thompson, R. C., Olson, M. E. 2002. Prevalence of Giardia and Cryptosporidium and characterization of Cryptosporidium spp. isolated from wildlife, human, and agricultural sources in the North Saskatchewan River Basin in Alberta, Canada. Canadian Journal of Microbiology. 48:530-41. 47 Muhlnickel, C. J., Jefferies, R., Morgan, U. M and Irwin, P. J. 32 0.514 2002. gibsoni infection in three dogs in Victoria. Australian Veterinary Journal. 80:606-610. 48 Morgan-Ryan, U. M., Fall, A., Ward, L. A., Hijjawi, N., 184 2.28 Sulaiman, I., Fayer, R., Thompson, R. C. A., Olson, M., Lal, A. and Xiao, L. 2002. Cryptosporidium hominis n. sp. (Apicomplexa: Cryptosporidiidae). Journal of Eukaryotic Microbiology. 49:433-440. 49 Harandi, M. F., Hobbs, R. P., Adams, P. J., Mobedi, I., 39 1.868 Morgan-Ryan, U. M. and Thompson, R. C. A. 2002. Molecular and morphological characterization of Echinococcus granulosus of human and animal origin in Iran. Parasitology. 125:367-73. 50 Macnish, M. G., Morgan, U. M., Monis, P. T. Behnke, J. M. 18 1.868 and Thompson, R. C. A. (2002). A molecular phylogeny of nuclear and mitochondrial sequences in Hymenolepis) nana (Cestoda) supports the existence of a cryptic species. Parasitology. 125:567-575. 51 Xiao, L., Sulaiman, I., Ryan, U., Zhou, L., Atwill, E. R., 133 3.092 Tischler, M. L., Zhang, X., Fayer, R., and Lal, A. A. 2002. Host adaptation and host-parasite co-evolution in Cryptosporidium. International Journal for Parasitology. 32:1773-1785. 52 Hijjawi, N. S., Meloni, B. P., Ryan, U. M., Olson, M. E., and 38 3.092 Thompson, R. C. A. 2002. Successful in vitro cultivation of Cryptosporidium andersoni: Evidence for the existence of novel extracellular stages in the life cycle and implications for classification of Cryptosporidium. International Journal of Parasitology. 32:1719-26. 53 Jefferies, R., Ryan, U. M., Muhlnickel, C and Irwin, P. J. 2003 32 1.485 Two species of canine Babesia in Australia: Detection and characterisation by PCR. Journal of Parasitology. 89: 409-412. 54 Fall, A., Thompson, R. C. A., Hobbs, R. P. and Morgan-Ryan, 31 1.485 U.M. 2003. Morphology is not a reliable tool for delineating species within Cryptosporidium. Journal of Parasitology. 89: 399-402. 55 Warren, K. S., Swan, R.A., Morgan-Ryan, U. M., Friend, J. A. 14 0.514 and Elliot, A. 2003. Cryptosporidium muris infection in bilbies (Macrotis lagotis). Australian Veterinary Journal. 81:8-10. 56 Fretz, R., Svoboda P., Ryan, U. M., Thompson, R. C. A., 17 1.462 Tanner, M. and Baumgartner, A. 2003. Genotyping of Cryptosporidium spp. isolated from human stool samples in Switzerland. Epidemiology and Infection. 131:663-7. 57 Ryan, U. M., L. Xiao, C. Read, I. M. Sulaiman, P. Monis, A. A. 42 1.485 Lal, R. Fayer and I. Pavlasek. 2003. A redescription of Cryptosporidium galli Pavlasek 1999, 2001 (Apicomplexa: Cryptospodiidae) from birds. Journal of Parasitology. 89: 809- 813. 58 Ryan, U. M., Xiao, L., Read, C., Zhou, L., Lal, A. A. and 68 4.004 Pavlasek, I. 2003. Identification of novel Cryptosporidium genotypes from the Czech Republic. Applied and Environmental Microbiology. 69:4302-7. 59 Xiao, L., Ryan, U. M., Graczyk, T. K., Limor, J., Li, L., 35 4.004 Kombert, M., Junge, R., Sulaiman, I. M., Zhou, L., Arrowood, M. J., Koudela, B., Lal, A. A. 2004. Genetic Diversity of Cryptosporidium Parasites in Captive Reptiles. Applied and Environmental Microbiology. 70:891-899.

60 Ryan, U. M., B. Samarasinghe, C. Read, R. Buddle, I. M. 31 4.004 Robertson, and R. C. A. Thompson. 2003. Identification of a novel genotype of Cryptosporidium in pigs. Applied and Environmental Microbiology. 69:3970-4. 61 Macnish, M. G., Ryan, U. M., Behnke, J. M. and Thompson, R. 6 2.8 C. A. 2003. Detection of the rodent tapeworm Rodentolepis (=Hymenolepis) microstoma in humans. A new zoonosis?. International Journal for Parasitology. 33:1079-85. 62 Ryan, U. M., Monis, P., Enemark, H. L., Sulaiman, I., 58 1.485 Samarasinghe, B., Read, C., Buddle, R., Robertson, I., Zhou, L., Thompson, R. C. A. and Xiao, L. 2004. Cryptosporidium suis. n. spp. (Apicomplexa: Cryptosporidiidae) in pigs (Sus scrofa). Journal of Parasitology. 90:769–773.

63 Ryan, U. M., O’Hara, A. and Xiao, L. 2004. Molecular and 9 4.004 biological characterization of a C. molnari-like isolate of Cryptosporidium from a guppy (Poecilia reticulata). Applied and Environmental Microbiology. 70:3761-5.

64 Zhou, L., Fayer, R., Trout, J. M., Ryan, U. M., Schaefer III, F. 32 4.004 W. and Xiao, L. 2004. Genotypes of Cryptosporidium infecting fur-bearing mammals differ from those infecting humans. Applied and Environmental Microbiology. 70:7574-7. 65 Hijjawi, N.S. Meloni, B.P. Ng'anzo, M., Ryan, U.M. Olson, M. 46 3.092 E., Cox, P. T. Monis, P.T. and Thompson, R.C.A. 2004. Complete development of Cryptosporidium parvum in host cell free culture. International Journal for Parasitology. 34:769-77. 66 Ryan, U. M., Read, C., Hawkins, P., Warnecke, M., Swanson, 21 1.819

P., Deere, D. and Cox, P. 2005. Genotypes of Cryptosporidium from Sydney water catchment areas. Journal of Applied Microbiology. 98: 1221-1229. 67 Ryan, U. M., Bath, C., Robertson, I., Read, C., Eliott, A., 82 4.004 McInnes, R. Traub, L., Besier, B. 2005. Sheep may not be an important zoonotic reservoir for Cryptosporidium and Giardia. Applied and Environmental Microbiology. 71: 4992-4997. 20 68 McInnes, L.M., Irwin, P., Palmer, D. G., Ryan, U.M. 2006. In 1.445 vitro Isolation and Characterisation of the First Canine caninum isolate in Australia. Veterinary Parasitology. 137: 355-63. 69 McInnes, L., Ryan, U. M., O'Handley, R., Sager, H., Forshaw, 5 1.445 D., Palmer, D. 2006. Diagnostic significance of Neospora caninum DNA detected by PCR in cattle serum. Veterinary Parasitology. 142:207-13. 70 Ferguson C, Deere D, Sinclair M, Chalmers RM, Elwin K, 5 3.93 Hadfield S, Xiao L, Ryan, U., Gasser R, El-Osta YA, Stevens M. 2006. Meeting report: Application of genotyping methods to assess risks from Cryptosporidium in watersheds. Environmental Health Perspectives. 114:430-4. 71 Ng, J., Pavlasek, I. and Ryan, U.M. 2006. Identification of 29 4.004 novel Cryptosporidium genotypes from avian hosts. Applied and Environmental Microbiology. 72:7548-53. 72 Pavlasek, I. and Ryan, U. 2007. The first finding of a natural 5 1.686 infection of Cryptosporidium muris in a cat. Vet Parasitol. 144:349-52. 73 Jefferies, R., Ryan, U.M., and Irwin P.J. 2007. PCR-RFLP for 24 1.686 the detection and differentiation of the canine piroplasm species and its use with filter paper-based technologies. Vet Parasitol. 144:20-7. 74 Xiao, L., Fayer, R., Ryan, U., Upton, S. 2007. Response to the 2 4.526 newly proposed species Cryptosporidium pestis. Trends in Parasitology. 23:41-2 75 Jex, A.R., Ryan, U., Ng, J., Campbell, B.E., Xiao, L., Stevens, 13 4.325 M. and Gasser. R. 2007. Specific and genotypic identification of Cryptosporidium from a broad range of host species by nonisotopic single-5 strand conformation polymorphism (SSCP) analysis of nuclear ribosomal DNA. Electrophoresis. 28:2818- 25. 76 Foo, C., Farrell, J., Boxell, A., Robertson, I. and Ryan, U.M. 5 4.004 2007. A novel Cryptosporidium genotype in wild Australian mice (Mus domesticus). Applied and Environmental Microbiology. 73:7693-6. 77 Jefferies, R., Ryan, U.M., Jardine, J., Broughton, D.K., 13 Robertson, I.D., Irwin, P.J. 2007. Blood, Bull Terriers and Babesiosis: further evidence for direct transmission of Babesia gibsoni in dogs. Australian Veterinary Journal. 85:459-63 78 Jefferies, R., Ryan, U.M., Jardine, J., Robertson, I.D., Irwin, 10 1.108 P.J. 2007. Babesia gibsoni: detection during experimental infections and after combined atovaquone and azithromycin therapy. Experimental Parasitology. 117:115-23. 79 O’Brien, E., McInnes, L. and Ryan, U. 2008. Cryptosporidium 16 1.108 GP60 genotypes from humans and domesticated animals in Australia, North America and Europe. Experimental Parasitology. 118:118-21. 80 McCarthy, S., Ng, J., Gordon, C., Miller, R., Wyber, A., Ryan, 16 1.108 U.M. 2008. Prevalence of Cryptosporidium and Giardia species in animals in irrigation catchments in the southwest of Australia. Experimental Parasitology. 118:596-9. 81 Pavlasek, I., Ryan, U. 2008. Cryptosporidium varanii takes 4 1.108 precedence over C. saurophilum. Experimental Parasitology. 118:434-7. 82 Chin Lee, S.H., Jefferies, R., Watt, P., Hopkins, R., Sotzik, F., 1.108 Reid, S., Armson, A., Boxell, A., Ryan, U. 2008. In vitro analysis of the TAT protein transduction domain as a drug delivery vehicle in protozoan parasites. Experimental Parasitology. 118:303-7. 83 Ryan, U.M., Power, M. and Xiao, L. 2008. Cryptosporidium 14 2.28 fayeri. n. sp. (Apicomplexa: Cryptosporidiidae) from the Red Kangaroo (Macropus rufus). Journal of Eukaryotic Microbiology. 55: 22–26. 84 Ng, J., Eastwood, K., Durrheim, D., Massey, P., Walker, B., 8 1.108 Armson, A., Ryan, U.. 2008. Evidence supporting zoonotic transmission of Cryptosporidium in rural New South Wales. Experimental Parasitology. 119:192-5. 8 1.485 85 Power, M. and Ryan, U.M. 2008. A new species of Cryptosporidium (Apicomplexa: Cryptosporidiidae) from eastern grey kangaroos (Macropus giganteus). Journal of Parasitology. 94:1114-7. 86 Samarasinghe, B., Johnson, J., Ryan, U. 2008. Phylogenetic 1.773 analysis of species at the rRNA ITS1 locus and development of a PCR-RFLP assay. Experimental Parasitology. 118:592-5. 1 1.485 87 Jefferies, R., Down, J., McInnes, L., Ryan, U.M., Robertson, H., Jakob-Hoff, R and Irwin, P.J. 2008. Molecular characterization of Babesia kiwiensis from the Brown Kiwi (Apteryx mantelli). Journal of Parasitology. 94: 557–560. 88 Boxell, A., Chin Lee, S.H., Jefferies, R., Watt, P., Hopkins, R., 1.773 Sotzik, F., Reid, S., Armson, A., Ryan, U. 2008. Pyrrhocoricin as a potential drug delivery vehicle for Cryptosporidium parvum. Experimental Parasitology. 119:301-3. 89 Johnson, J., Buddle, R., Reid, S., Armson, A. and Ryan, U. 9 1.773 2008. Prevalence of Cryptosporidium genotypes in pre and post-weaned pigs in Australia. Experimental Parasitology. 119:418-21. 90 Boxell, A., Hijjawi, N., Monis, P. and Ryan, U. 2008. 1 1.773 Comparison of various staining methods for the detection of Cryptosporidium in cell-free culture. Experimental Parasitology. 120:67-72. 91 Thompson, J., Yang, R., Power, M., Hufschmid, J., Beveridge, 3 1.773 I., Reid, S., Ng, J., Armson, A. and Ryan, U. 2008. Identification of zoonotic Giardia genotypes in marsupials in Australia. Experimental Parasitology. 120:88-93. 92 Johnson, J., Samarasinghe, B., Buddle, R., Armson, A. and 3 1.773 Ryan, U. 2008. Molecular identification and prevalence of sp. in pigs in Western Australia using a PCR-RFLP assay. Experimental Parasitology. 120:191-3. 93 Lee, J.Y., Ryan, U.M., Jefferies, R., McInnes, L., Clark, P., 2 2.28 Forshaw, D., Hartley, B., Friend, T. and Irwin, P.J. 2009. gilberti n. sp. (Apicomplexa: - Babesiidae) in the Gilbert's Potoroo (Potorous gilbertii). Journal of Eukaryotic Microbiology. 56:290-5. 94 Chalmers, R.M., Robinson, G., Elwin, K., Xiao, L., Ryan, U., 4 5.775 Modha, D., Mallaghan, C. 2009. Identification and characterisation of the Cryptosporidium rabbit genotype, a newly identified human pathogen. Emerging Infectious Diseases. 15:829-30. 95 Yang, R., Jacobson, C., Gordon, C. and Ryan, U. 2009. 2 2.016 Prevalence and molecular characterisation of Cryptosporidium and Giardia species in pre-weaned sheep in Australia. Veterinary Parasitology. 161:19-24. 96 Austen, J., Jefferies, R., Friend, T., Adams, P., Ryan, U., Reid, 2 1.786 S.A. 2009. Morphological and molecular characterisation of Trypanosoma copemani n.sp. (Trypanosomatidae) isolated from Gilbert’s potoroo (Potorous gilbertii) and quokka (Setonix brachyurus). Parasitology. 136:783-92 97 McInnes, L.M., Ryan, U.M., Austen, J., Gillett, A., Campbell, 6 1.786 R., Hanger, J and Reid, S. 2009. Trypanosoma irwini n. sp (Sarcomastigophora: Trypanosomatidae) from the Koala (Phascolarctos cinereus). Parasitology. 136: 875-885. 98 Armson, A., Yang, R., Thompson, J., Johnson, J., Reid and 7 1.773 Ryan, U.M. 2009. Giardia genotypes in pigs in Western Australia: Prevalence and association with diarrhea. Experimental Parasitology. 121:381-3. 99 Li, W., Zhang, N., Liang, X., Li, J., Gong, P., Yu, X., Ma, G., 10 2.896 Ryan, U.M. and Zhang, X. 2009. Transient transfection of Cryptosporidium parvum using green fluorescent protein (GFP) as a marker. Molecular and Biochemical Parasitology. 168:143- 8. 100 Hijjawi, N., Estcourt, A., Yang, R., Monis, P. and Ryan, U. 8 2.278 2009. Complete development and multiplication of Cryptosporidium hominis in cell-free culture. Veterinary Parasitology. 169, 29-36. 101 Yang, R., Reid, A., Lymbery, A. and Ryan, U. 2009. 5 3.752 Identification of zoonotic Giardia genotypes in fish. International Journal for Parasitology. 40:779-85. 102 Reid, A., Lymbery, A., Ng, J., Tweedle, S. and Ryan, U. 2010. 3 2.278 Identification of novel and zoonotic Cryptosporidium species in marine fish. Veterinary Parasitology. 168:190-5. 103 Yang, R., Lee, J., Ng, J., and Ryan, U. 2010. High prevalence 2 3.752 Giardia duodenalis assemblage B and potentially zoonotic subtypes in sporadic human cases in Western Australia. International Journal for Parasitology. 40:293-7. 104 Hijjawi, N., Ng, J., Yang, R., Atoum, M. and Ryan, U. 2010. 1 1.773 Identification of rare and novel Cryptosporidium GP60 subtypes in human isolates from Jordan. Experimental Parasitology. 125:161-4. 105 Ng, J., Pingault, N., Gibbs, R., Koehler, A. and Ryan, U. 2010. 4 1.773 Molecular Characterisation of Cryptosporidium outbreaks in Western and South Australia. Experimental Parasitology. 125:325-8. 106 Ng, J., MacKenzie, B., and Ryan, U. 2010. Longitudinal multi- 5 1.773 locus molecular characterisation of sporadic Australian human clinical cases of cryptosporidiosis from 2005 to 2007. Experimental Parasitology. 125:348-56. 107 Zanguee, N., Lymbery, J A., Lau, J., Suzuki, A., Yang, R., Ng, 2 2.278 J., Ryan, U. 2010. Identification of novel Cryptosporidium species in aquarium fish. Veterinary Parasitology. 174:43-8. 108 McInnes, L.M., Hanger, J., Simmons, G., Reid, S. and Ryan, U. 2 2.278 2011. Novel trypanosome Trypanosoma gilletti sp. (Sarcomastigophora: Trypanosomatidae) and the extension of the host range of Trypanosoma copemani to include the koala (Phascolarctos cinereus). Parasitology. 138:59-70. 109 Feng, Y., Yang, W., Ryan, U., Zhang, L., Kváč, M., Koudela, 1 4.162 B., Li, N., Fayer, R., Xiao, L. 2011. Development of a Multilocus Sequence Typing Tool for Cryptosporidium muris and Cryptosporidium andersoni. Journal of Clinical Microbiology. 49:34-41. 110 Kaewmongkol, G., Kaewmongkol, S., Owen, H., Fleming, T., 1 2.874 Adams, P., Ryan, U., Irwin, P., Fenwick, S. 2010. Candidatus Bartonella antechini: a novel Bartonella species detected in fleas and ticks from the yellow-footed antechinus (Antechinus flavipes), an Australian marsupial. Veterinary Microbiology. 149, 517-21. 111 Ng, J., Yang, R., Wiffin, V., Cox, P., Ryan, R. 2011. 1 1.773 Identification of zoonotic Cryptosporidium and Giardia genotypes infecting animals in Sydney’s Water Catchments. Experimental Parasitology. 28, 138-44. 112 Fitzgerald, L., Bennett, M., Ng, J., Nicholls, P., James, F., 1 2.278 Eliott, A., Slaven, M., Ryan, U. 2011. Morphological and molecular characterisation of a mixed Cryptosporidium muris/Cryptosporidium felis infection in a cat. Veterinary Parasitology. 175:160-4. 113 Ng, J., Yang, R., McCarthy, S., Gordon, C., Hijjawi, N., Ryan, 2 2.278 U. 2011. Molecular characterization of Cryptosporidium and Giardia in pre-weaned calves in Western Australia and New South Wales. Veterinary Parasitology. 176, 145-50. 114 Muhid, A., Robertson, I., Ng, J., Ryan, U. 2011. Prevalence of 2 1.773 and management factors contributing to Cryptosporidium sp. infection in pre-weaned and post-weaned calves in Johor, Malaysia. Experimental Parasitology. 27, 534-8. 115 Wielinga, C., Ryan, U., Thompson, R.C.A., Monis, P. 2011. 2 3.752 Multi loci analysis of Giardia duodenalis intra-Assemblage B substitution patterns in cloned culture isolates suggests sub- Assemblage analyses will require multi loci genotyping with conserved and variable genes. International Journal for Parasitology. 41, 495-503. 116 Power, M.L., Holley, M., Ryan, U.M., Worden, P., Gillings, 1 2.199 M.R. 2011. Identification and differentiation of Cryptosporidium species by capillary electrophoresis single- strand conformation polymorphism. FEMS Microbiology Letters. 314:34-41. 117 Yang, R., Fenwick, S., Potter, A., Ng, J., Ryan, U. 2011. 1 2.278 Identification of novel Cryptosporidium genotypes in kangaroos from Western Australia. Veterinary Parasitology. 179:22-7. 118 McInnes, L.M., Gillett, A., Hanger, J., Reid, S. and Ryan, U. 2.278 2011. The potential impact of native Australian trypanosome infections on the health of koalas (Phascolarctos cinereus). Parasitology 138 (7):873-883. 119 Sweeny, J., Ryan, U.M., Robertson, I., Yang, R., Bell, K., 1.108 Jacobsen, C. 2011. Longitudinal investigation of protozoan parasites and trichostrongylid worms in prime lamb farms in the south west of Western Australia. Preventive Veterinary Medicine. 101, 192-203. 120 Sweeny, J., Ryan, U.M., Robertson, I., Jacobsen, C. 2011. 2.278 Cryptosporidium and Giardia are associated with reduced lamb carcase productivity. Veterinary Parasitology. 182:127-39. 121 Gibson-Kueh, S., Yang, R., Thuy, N.T.N., Jones, J.B., Nicholls, 2.278 P.K., Ryan, U. 2011. The molecular characterization of an and Cryptosporidium detected in Asian seabass (Lates calcarifer) cultured in Vietnam. Veterinary Parasitology. 181, 91-6. 122 Austin, J.A., Ryan, U.M., Friend, J.A., Ditcham, W.G.F., Reid, 2.278 S.A. 2011. Vector of Trypanosoma copemani identified as Ixodes sp. Parasitology. 138, 866–872. 123 Paparini, A., Irwin, P.J Warren, K., McInnes, L.M., de Tores, 2.278 P., Ryan, U.M. 2011. Identification of novel trypanosome genotypes in native Australian marsupials. Veterinary Parasitology. 183(1-2), 21-30. 124 Ryan, U., Yang, R., Gordon, C and Doube, B. 2011. Effect of 1.773 dung burial by the dung beetle Bubas bison on numbers and viability of Cryptosporidium oocysts in cattle dung. Experimental Parasitology. 129, 1-4. 125 Kaewmongkol, G., Kaewmongkol, S., Fleming, P.A., Adams, P.J., Ryan, U., Irwin, P.J., Fenwick, S.G. 2011. Zoonotic Bartonella species in fleas and blood from red foxes in Australia. Vector Borne Zoonotic Dis. 11(12), 1549-53. 126 Kaewmongkol, G., Kaewmongkol, S., Burmej, H., Bennett, M.D., Fleming, P.A., Adams, P.J., Wayne, A.F., Ryan, U., Irwin, P.J., Fenwick, S.G. 2011. Diversity of Bartonella species detected in arthropod vectors from animals in Australia. Comp Immunol Microbiol Infect Dis. 34(5):411-7 127 Kaewmongkol, G., Kaewmongkol, S., McInnes, L.M., Burmej, H., Bennett, M.D., Adams, P.J., Ryan, U., Irwin, P.J., Fenwick, S.G. 2011. Genetic characterization of flea-derived Bartonella species from native animals in Australia suggests host-parasite co-evolution. Infect Genet Evol. 11(8), 1868-72. 128 Sweeny, J.P., Robertson, I.D., Ryan, U.M., Jacobson, C., 2.875 Woodgate, R.G. 2011. Comparison of molecular and McMaster microscopy techniques to confirm the presence of naturally acquired strongylid nematode infections in sheep. Molecular and Biochemical Parasitology. 180, 62-67. 129 Muhid, A., Robertson, I., Yang, R., Ng, J., Ryan, U. 2012. 1 2.323 Prevalence of and management factors contributing to Giardia sp. infection in pre-weaned and post-weaned calves in Johor, Malaysia. The Veterinary Journal. 191, 135-7. 130 Sweeny, J.P., Robertson, I.D., Ryan, U.M., Jacobson, C., 2.278 Woodgate, R.G. 2012. Impacts of naturally acquired protozoa and strongylid nematode infections on growth and faecal attributes in lambs. Veterinary Parasitology. 184(2-4), 298-308. 131 Sweeny, J.P., Ryan, U.M., Robertson, I.D., Jacobson, C. 2012. 2.796 Prevalence and on-farm risk factors for diarrhoea in meat lamb flocks in Western Australia. Veterinary Journal. In press. 132 McInnes, L.M., Dargantes, A., Ryan, U.M. and Reid, S.A. 2.278 2012. Microsatellite typing and population structuring of Trypanosoma evansi in Mindanao, Philippines. Veterinary Parasitology, In press. doi:10.1016/j.vetpar.2011.12.010 133 Sweeny, J.P., Ryan U.M., Robertson I.D. 2012. Molecular 2.278 identification of naturally acquired strongylid infections in lambs-An investigation into how lamb age influences diagnostic sensitivity. Vet Parasitol. In press. 134 Paparini, A., Ryan, U.M., Warren, K., McInnes, L.M., de 1.773 Tores, P., Irwin, P.J. 2012. Identification of novel Babesia and Theileria genotypes in the endangered marsupials, the woylie (Bettongia penicillata ogilbyi) and boodie (Bettongia lesueur). Exp Parasitol. In press. 135 Zhao, G.H., Li, H.M., Ryan, U.M., Cong, M.M., Hu, B., Gao, M., Ren, W.X., Wang, X.Y., Zhang, S.P., Lin, Q., Zhu, X.Q., Yu, S.K. 2012. Phylogenetic study of Baylisascaris schroederi isolated from Qinling subspecies of giant panda in China based on combined nuclear 5.8S and the second internal transcribed spacer (ITS-2) ribosomal DNA sequences. Parasitol Int. In press. 136 Ng, J.S., Eastwood, K., Walker, B., Durrheim, D.N., Massey, 1.773 P.D., Porigneaux, P., Kemp, R., McKinnon, B., Laurie, K., Miller, D., Bramley, E., Ryan, U. 2012. Evidence of Cryptosporidium transmission between cattle and humans in northern New South Wales. Exp Parasitol. 130, 437-41. 137 Rong, J., Bunce, M., Wayne, A., Pacioni, C., Ryan, U., Irwin, 1.773 P. 2012. A high prevalence of Theileria penicillata in woylies (Bettongia penicillata). Exp Parasitol. In press.