Adaptations and Lifestyle in Polar Marine Environments: a Biological Challenge for the Study of Fish Evolution
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Jan Jansen, Dipl.-Biol
The spatial, temporal and structural distribution of Antarctic seafloor biodiversity by Jan Jansen, Dipl.-Biol. Under the supervision of Craig R. Johnson Nicole A. Hill Piers K. Dunstan and John McKinlay Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Quantitative Antarctic Science Institute for Marine and Antarctic Studies (IMAS), University of Tasmania May 2019 In loving memory of my dad, whose passion for adventure, sport and all of nature’s life and diversity inspired so many kids, including me, whose positive and generous attitude touched so many people’s lives, and whose love for the ocean has carried over to me. The spatial, temporal and structural distribution of Antarctic seafloor biodiversity by Jan Jansen Abstract Biodiversity is nature’s most valuable resource. The Southern Ocean contains significant levels of marine biodiversity as a result of its isolated history and a combination of exceptional environmental conditions. However, little is known about the spatial and temporal distribution of biodiversity on the Antarctic continental shelf, hindering informed marine spatial planning, policy development underpinning regulation of human activity, and predicting the response of Antarctic marine ecosystems to environmental change. In this thesis, I provide detailed insight into the spatial and temporal distribution of Antarctic benthic macrofaunal and demersal fish biodiversity. Using data from the George V shelf region in East Antarctica, I address some of the main issues currently hindering understanding of the functioning of the Antarctic ecosystem and the distribution of biodiversity at the seafloor. The focus is on spatial biodiversity prediction with particular consideration given to previously unavailable environmental factors that are integral in determining where species are able to live, and the poor relationships often found between species distributions and other environmental factors. -
Mitochondrial DNA, Morphology, and the Phylogenetic Relationships of Antarctic Icefishes
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 28 (2003) 87–98 www.elsevier.com/locate/ympev Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae) Thomas J. Near,a,* James J. Pesavento,b and Chi-Hing C. Chengb a Center for Population Biology, One Shields Avenue, University of California, Davis, CA 95616, USA b Department of Animal Biology, 515 Morrill Hall, University of Illinois, Urbana, IL 61801, USA Received 10 July 2002; revised 4 November 2002 Abstract The Channichthyidae is a lineage of 16 species in the Notothenioidei, a clade of fishes that dominate Antarctic near-shore marine ecosystems with respect to both diversity and biomass. Among four published studies investigating channichthyid phylogeny, no two have produced the same tree topology, and no published study has investigated the degree of phylogenetic incongruence be- tween existing molecular and morphological datasets. In this investigation we present an analysis of channichthyid phylogeny using complete gene sequences from two mitochondrial genes (ND2 and 16S) sampled from all recognized species in the clade. In addition, we have scored all 58 unique morphological characters used in three previous analyses of channichthyid phylogenetic relationships. Data partitions were analyzed separately to assess the amount of phylogenetic resolution provided by each dataset, and phylogenetic incongruence among data partitions was investigated using incongruence length difference (ILD) tests. We utilized a parsimony- based version of the Shimodaira–Hasegawa test to determine if alternative tree topologies are significantly different from trees resulting from maximum parsimony analysis of the combined partition dataset. Our results demonstrate that the greatest phylo- genetic resolution is achieved when all molecular and morphological data partitions are combined into a single maximum parsimony analysis. -
Of RV Upolarsternu in 1998 Edited by Wolf E. Arntz And
The Expedition ANTARKTIS W3(EASIZ 11) of RV uPolarsternuin 1998 Edited by Wolf E. Arntz and Julian Gutt with contributions of the participants Ber. Polarforsch. 301 (1999) ISSN 0176 - 5027 Contents 1 Page INTRODUCTION........................................................................................................... 1 Objectives of the Cruise ................................................................................................l Summary Review of Results .........................................................................................2 Itinerary .....................................................................................................................10 Meteorological Conditions .........................................................................................12 RESULTS ...................................................................................................................15 Benthic Resilience: Effect of Iceberg Scouring On Benthos and Fish .........................15 Study On Benthic Resilience of the Macro- and Megabenthos by Imaging Methods .............................................................................................17 Effects of Iceberg Scouring On the Fish Community and the Role of Trematomus spp as Predator on the Benthic Community in Early Successional Stages ...............22 Effect of Iceberg Scouring on the Infauna and other Macrobenthos ..........................26 Begin of a Long-Term Experiment of Benthic Colonisation and Succession On the High Antarctic -
The Hemoglobins of Sub-Antarctic Fishes of the Suborder Notothenioidei
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Available online at www.sciencedirect.com Polar Science 4 (2010) 295e308 http://ees.elsevier.com/polar/ The hemoglobins of sub-Antarctic fishes of the suborder Notothenioidei Daniela Coppola a, Daniela Giordano a, Alessandro Vergara b, Lelio Mazzarella b, Guido di Prisco a, Cinzia Verde a, Roberta Russo a,* a Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, I-80131 Naples, Italy b Department of Chemistry, University of Naples ‘Federico II’, Complesso Universitario Monte S. Angelo, Via Cinthia, I-80126 Naples, Italy Received 16 December 2009; revised 19 April 2010; accepted 19 April 2010 Available online 12 May 2010 Abstract Fishes of the perciform suborder Notothenioidei provide an excellent opportunity for studying the evolution and functional importance of evolutionary adaptations to temperature. To understand the unique biochemical features of high-Antarctic noto- thenioids, it is important to improve our knowledge of these highly cold-adapted stenotherms with new information on their sub- Antarctic relatives. This paper focuses on the oxygen-transport system of two non-Antarctic species, Eleginops maclovinus and Bovichtus diac- anthus. Unlike most Antarctic notothenioids, the blood of E. maclovinus and B. diacanthus displays high hemoglobin (Hb) multiplicity. E. maclovinus, the sister group of Antarctic notothenioids, has one cathodal (Hb C) and two anodal components (Hb 1, Hb 2). B. diacanthus, one of the most northern notothenioids, has three major Hbs. The multiple Hbs may have been maintained as a response to temperature differences and fluctuations of temperate waters, much larger than in the Antarctic. -
2008-2009 Field Season Report Chapter 9 Antarctic Marine Living Resources Program NOAA-TM-NMFS-SWFSC-445
2008-2009 Field Season Report Chapter 9 Antarctic Marine Living Resources Program NOAA-TM-NMFS-SWFSC-445 Demersal Finfi sh Survey of the South Orkney Islands Christopher Jones, Malte Damerau, Kim Deitrich, Ryan Driscoll, Karl-Hermann Kock, Kristen Kuhn, Jon Moore, Tina Morgan, Tom Near, Jillian Pennington, and Susanne Schöling Abstract A random, depth-stratifi ed bottom trawl survey of the South Orkney Islands (CCAMLR Subarea 48.2) fi nfi sh populations was completed as part of Leg II of the 2008/09 AMLR Survey. Data collection included abundance, spatial distribution, species and size composition, demographic structure and diet composition of fi nfi sh species within the 500 m isobath of the South Orkney Islands. Additional slope stations were sampled off the shelf of the South Orkney Islands and in the northern Antarctic Peninsula region (Subarea 48.1). During the 2008/09 AMLR Survey: • Seventy-fi ve stations were completed on the South Orkney Island shelf and slope area (63-764 m); • Th ree stations were completed on the northern Antarctic Peninsula slope (623-759 m); • A total of 7,693 kg (31,844 individuals) was processed from 65 fi nfi sh species; • Spatial distribution of standardized fi nfi sh densities demonstrated substantial contrast across the South Orkney Islands shelf area; • Th e highest densities of pooled fi nfi sh biomass occurred on the northwest shelf of the South Orkney Islands, at sta- tions north of Inaccessible and Coronation Islands, and the highest mean densities occurred within the 150-250 m depth stratum; • Th e greatest species diversity of fi nfi sh occurred at deeper stations on the southern shelf region; • Additional data collection of environmental and ecological features of the South Orkney Islands was conducted in order to further investigate Antarctic fi nfi sh in an ecosystem context. -
Biogeographic Atlas of the Southern Ocean
Census of Antarctic Marine Life SCAR-Marine Biodiversity Information Network BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN CHAPTER 7. BIOGEOGRAPHIC PATTERNS OF FISH. Duhamel G., Hulley P.-A, Causse R., Koubbi P., Vacchi M., Pruvost P., Vigetta S., Irisson J.-O., Mormède S., Belchier M., Dettai A., Detrich H.W., Gutt J., Jones C.D., Kock K.-H., Lopez Abellan L.J., Van de Putte A.P., 2014. In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d’Acoz C. d’, et al. (eds.). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 328-362. EDITED BY: Claude DE BROYER & Philippe KOUBBI (chief editors) with Huw GRIFFITHS, Ben RAYMOND, Cédric d’UDEKEM d’ACOZ, Anton VAN DE PUTTE, Bruno DANIS, Bruno DAVID, Susie GRANT, Julian GUTT, Christoph HELD, Graham HOSIE, Falk HUETTMANN, Alexandra POST & Yan ROPERT-COUDERT SCIENTIFIC COMMITTEE ON ANTARCTIC RESEARCH THE BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN The “Biogeographic Atlas of the Southern Ocean” is a legacy of the International Polar Year 2007-2009 (www.ipy.org) and of the Census of Marine Life 2000-2010 (www.coml.org), contributed by the Census of Antarctic Marine Life (www.caml.aq) and the SCAR Marine Biodiversity Information Network (www.scarmarbin.be; www.biodiversity.aq). The “Biogeographic Atlas” is a contribution to the SCAR programmes Ant-ECO (State of the Antarctic Ecosystem) and AnT-ERA (Antarctic Thresholds- Ecosys- tem Resilience and Adaptation) (www.scar.org/science-themes/ecosystems). Edited by: Claude De Broyer (Royal Belgian Institute -
The Molecular Evolution of Rhodopsin in Marine-Derived
THE MOLECULAR EVOLUTION OF RHODOPSIN IN MARINE-DERIVED AND OTHER FRESHWATER FISHES by Alexander Van Nynatten A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Cell and Systems Biology University of Toronto © Copyright by Alexander Van Nynatten (2019) THE MOLECULAR EVOLUTION OF RHODOPSIN IN MARINE-DERIVED AND OTHER FRESHWATER FISHES A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Cell and Systems Biology University of Toronto © Copyright by Alexander Van Nynatten (2019) ABSTRACT Visual system evolution can be influenced by the spectral properties of light available in the environment. Variation in the dim-light specialized visual pigment rhodopsin is thought to result in functional shifts that optimize its sensitivity in relation to ambient spectral environments. Marine and freshwater environments have been shown to be characterized by different spectral properties and might be expected to place the spectral sensitivity of rhodopsin under different selection pressures. In Chapter two, I show that the rate ratio of non- synonymous to synonymous substitutions is significantly elevated in the rhodopsin gene of a South American clade of freshwater anchovies with marine ancestry. This signature of positive selection is not observed in the rhodopsin gene of the marine sister clade or in non-visual genes. ii In Chapter three I functionally characterize the effects of positively selected substitutions occurring on another independent invasion of freshwater made by ancestrally marine croakers. In vitro spectroscopic assays on ancestrally resurrected rhodopsin pigments reveal a red-shift in peak spectral sensitivity along the transitional branch, consistent with the wavelengths of light illuminating freshwater environments. -
The Role of Notothenioid Fish in the Food Web of the Ross Sea Shelf Waters
Polar Biol (2004) 27: 321–338 DOI 10.1007/s00300-004-0599-z REVIEW M. La Mesa Æ J. T. Eastman Æ M. Vacchi The role of notothenioid fish in the food web of the Ross Sea shelf waters: a review Received: 27 June 2003 / Accepted: 23 January 2004 / Published online: 12 March 2004 Ó Springer-Verlag 2004 Abstract The Ross Sea, a large, high-latitude (72–78°S) are benthic predators on fish while smaller species feed embayment of the Antarctic continental shelf, averages mainly on benthic crustaceans. Channichthyids are less 500 m deep, with troughs to 1,200 m and the shelf break dependent on the bottom for food than other notothe- at 700 m. It is covered by pack ice for 9 months of the nioids. Some species combine benthic and pelagic life year. The fish fauna of about 80 species includes pri- styles; others are predominantly pelagic and all consume marily 4 families and 53 species of the endemic perci- euphausiids and/or fish. South polar skuas, Antarctic form suborder Notothenioidei. This review focuses on petrels, Ade´lie and emperor penguins, Weddell seals and the diet and role in the food web of notothenioids and minke and killer whales are the higher vertebrate com- top-level bird and mammal predators, and also includes ponents of the food web, and all prey on notothenioids new information on the diets of artedidraconids and to some extent. Based on the frequency of occurrence of bathydraconids. Although principally a benthic group, prey items in the stomachs of fish, bird and mammal notothenioids have diversified to form an adaptive predators, P. -
Phylogenetic Analysis of Antarctic Notothenioids Illuminates the Utility of 7 Radseq for Resolving Cenozoic Adaptive Radiations
0ROHFXODU3K\ORJHQHWLFVDQG(YROXWLRQ ² Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic analysis of Antarctic notothenioids illuminates the utility of 7 RADseq for resolving Cenozoic adaptive radiations Thomas J. Neara,b,⁎, Daniel J. MacGuigana, Elyse Parkera, Carl D. Struthersc, Christopher D. Jonesd, Alex Dornburge a Department of Ecology & Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, CT 06520, USA b Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA c Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand d Antarctic Ecosystem Research Division, NOAA Southwest Fisheries Science Center, La Jolla, CA 92037, USA e North Carolina Museum of Natural Sciences, Raleigh, NC 27601, USA ARTICLE INFO ABSTRACT Keywords: Notothenioids are a clade of ∼120 species of marine fishes distributed in extreme southern hemisphere tem- Notothenioidei perate near-shore habitats and in the Southern Ocean surrounding Antarctica. Over the past 25 years, molecular Phylogenomics and morphological approaches have redefined hypotheses of relationships among notothenioid lineages as well Phylogenetic informativeness as their relationships among major lineages of percomorph teleosts. These phylogenies provide a basis for in- Signal noise vestigation of mechanisms of evolutionary diversification within the clade and have enhanced our understanding Icefishes of the notothenioid adaptive radiation. Despite extensive efforts, there remain several questions concerning the phylogeny of notothenioids. In this study, we deploy DNA sequences of ∼100,000 loci obtained using RADseq to investigate the phylogenetic relationships of notothenioids and to assess the utility of RADseq loci for lineages that exhibit divergence times ranging from the Paleogene to the Quaternary. -
Blood Physiology and Ecological Consequences in Weddell Sea Fishes (Antarctica)
Blood Physiology and Ecological Consequences in Weddell Sea Fishes (Antarctica) Blutphysiologie und ökologisch Konsequenzen von Fischen des Weddellmeeres (Antarktis) Andreas Kunzmann Ber. Polarforsch. 91 (1991) ISSN 0176 - 5027 Andreas Kunzmann Institut füPolarökologie Christian-Albrechts-Universitä zu Kiel, Olshausenstraß40-60, D-2300 Kiel 1, Bundesrepublik Deutschland Printed version of a Ph. D. Thesis of the mathematisch-naturwissenschaftlicheFakultä of the University of Kiel Druckfassung einer Dissertation füdie mathematisch-naturwissenschaftliche Fakultä der Christian-Albrechts-Universitäzu Kiel Summary ..................................................... l Zusammenfassung ............................................. 3 Introduction ................................................... 5 BLOOD FWNCTIONS ........................................ 5 FISHBLOOD .............................................. 5 Haematological adaptations ............................... 6 Multiple components .................................... 7 Haemoglobin structure and function .......................... 7 ANTARCTIC FISHES AND THEIR ENVIRONMENT ................. 10 Present knowledge in respiratory physiology .................... 12 HYPOTHESES ............................................. 14 Materials and Methods ..........................................15 COLLECTION OF FISHES ....................................15 ANALYSIS OF BLOOD SAMPLES .............................. 16 STRUCTURAL STUDIES .....................................24 FWNCTIONAL STUDIES -
Identification Key an Talogue O Larval Antarctic Fishe Dited by Adolf Kellerrnann
Identification Key an talogue o Larval Antarctic Fishe dited by Adolf Kellerrnann Prepared and published with the support of the Alfred-Wegener-Institut füPolar- und Meeresforschung, SCAR (Scientific Committee on Antarctic Research) and CCAMLR (Commission for the Conservation of Antarctic Marine Living Resources) Ber. Polarforsch. 67 (1990) ISSN 0176-5027. This volurne will also be oublished in the BIOMASS Scientific Series, Vol. 10 Dr. Adolf Kellermann Alfred-Wegener-Institute for Polar and Marine Research 2850 Bremerhaven FRG present address: University of Hawaii Oceanic Biology, MSB R622 1000 Pope Road Honolulu, Hl 96822 USA Mr. Anthony W. North British Antarctic Survey Madingley Road Cambridge CB3 OET UK .. - 111 - CONTENTS Key to the early stages of Antarctic fish (A.W. North and A. Kellermann) .........................................................................1 Catalogue of early life stages of Antarctic notothenioid fishes (A. Kellermann) .....................................................................................................45 Preface This booklet has two parts which are cornplementary to each other: an identification key which atternpts to include larvae from all fish families occurring in the Southern Ocean, and a catalogue which considers only the early Stages of the most abundant bottorn dwel- ling fishes, the percomorph notothenioid fishes. The original idea conceived in 1985 was to produce a synopsis of what was known about the larval development and ecology of notothenioid fishes as the peculiar element of the Antarctic fish fauna. Later On, when ichthyologists had become aware that difficulties still existed in identifying these larvae, it was suggested during the BIOMASS Post-SIBEX Fish Data Evaluation Workshop held at Carnbridge, 1986, to have both, a key and a catalogue in one volume, with the key to be produced in collaboration with Tony North of the British Antarctic Survey. -
Parasite Fauna of the Antarctic Dragonfish Parachaenichthys Charcoti
Münster et al. Parasites & Vectors (2017) 10:235 DOI 10.1186/s13071-017-2176-7 RESEARCH Open Access Parasite fauna of the Antarctic dragonfish Parachaenichthys charcoti (Perciformes: Bathydraconidae) and closely related Bathydraconidae from the Antarctic Peninsula, Southern Ocean Julian Münster*, Judith Kochmann, Juline Grigat, Sven Klimpel and Thomas Kuhn Abstract Background: As members of the Notothenioidei - the dominant fish taxon in Antarctic waters - the family Bathydraconidae includes 12 genera and 17 species. The knowledge of these species inhabiting an isolated environment is rather fragmentary, including their parasite fauna. Studies on fish hosts and their associated parasites can help gain insights into even remote ecosystems and be used to infer ecological roles in food webs; however, ecological studies on the Bathydraconidae are scarce. Results: In this study, stomach contents and parasite fauna of the Antarctic dragonfish species Parachaenichthys charcoti (n =47specimens)aswellasofGerlachea australis (n =5),Gymnodraco acuticeps (n =9)andRacovitzia glacialis (n =6) were examined. The parasite fauna of P. charcoti consisted of eight genera represented by 11 species, with three of them being new host records. Overall, 24 parasite genera and 26 species were found in the sampled fish, including eleven new host records. Conclusion: Analyses revealed that the majority of the parasite species found in the different fish hosts are endemic to Antarctic waters and are characterized by a broad host range. These findings are evidence