2008-2009 Field Season Report Chapter 9 Antarctic Marine Living Resources Program NOAA-TM-NMFS-SWFSC-445
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Examples of Amino Acid Changes in Notothenioids Methods To
Supplementary Information S1 Candidate genes: examples of amino acid changes in notothenioids Methods To evaluate notothenioid amino acid changes in a cross‐section of genes, six candidates from a range of functional categories of interest were chosen for a more detailed examination. The selected genes comprised small, well‐characterised genes present in multiple fish species (mainly teleosts, but in some cases these analyses were extended to the Actinopterygii when sequences from the spotted gar (Lepisosteus oculatus) were available) and available in at least two notothenioids. The amino acid composition of a series of six candidate genes were further analysed in depth at the amino acid sequence level. These genes were superoxide dismutase 1 (SOD1), neuroglobin, dihydrofolate reductase (both paralogues), p53 and calmodulin. Clustal X alignments were constructed from orthologues identified in the four Notothenioid transcriptomes along with other fish orthologues extracted from either SwissProt (Bateman et al., 2017) or Ensembl release 91 (Aken et al., 2017). Alignment data were visualised and annotated in BoxShade version 3.21 (https://embnet.vital‐ it.ch/software/BOX_form.html). Notothenioid‐specific changes were noted and the type of substitution in terms of amino acid properties was noted. Results A range of amino acid changes were revealed, from virtually complete conservation between the notothenioids and other fish (calmodulin), to one amino acid substitution present in neuroglobin and SOD1, to more extensive changes in dihydrofolate reductase, dihydrofolate reductase‐like and p53. In the case of the latter three genes, notothenioid‐specific changes were at positions that were often highly variable in temperate fish species with up to six different amino acid substitutions and did not result in a definable pattern of directional substitution. -
High Seas Bottom Trawl Fisheries and Their Impacts on the Biodiversity Of
High Seas Bottom Trawl Fisheries and their Impacts on the Biodiversity of Vulnerable Deep-Sea Ecosystems: Options for International Action Matthew Gianni Cover Photography The author wishes to thank the following contributors for use of their photography. Clockwise from top right: A rare anglerfish or sea toad (Chaunacidae: Bathychaunax coloratus), measuring 20.5 cm in total length, on the Davidson Seamount (2461 meters). Small, globular, reddish, cirri or hairy protrusions cover the body. The lure on the forehead is used to attract prey. Credit: NOAA/MBARI 2002 Industrial fisheries of Orange roughy. Emptying a mesh full of Orange roughy into a trawler. © WWF / AFMA, Credit: Australian Fisheries Management Authority White mushroom sponge (Caulophecus sp). on the Davidson Seamount (1949 meters). Credit: NOAA/MBARI 2002 Bubblegum coral (Paragorgia sp.) and stylasterid coral (Stylaster sp.) at 150 meters depth off Adak Island, Alaska. Credit: Alberto Lindner/NOAA Cover design: James Oliver, IUCN Global Marine Programme Printing of this publication was made possible through the generous support of HIGH SEAS BOTTOM TRAWL FISHERIES AND THEIR IMPACTS ON THE BIODIVERSITY OF VULNERABLE DEEP-SEA ECOSYSTEMS: OPTIONS FOR INTERNATIONAL ACTION Matthew Gianni IUCN – The World Conservation Union 2004 Report prepared for IUCN - The World Conservation Union Natural Resources Defense Council WWF International Conservation International The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN, WWF, Conservation International or Natural Resources Defense Council concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. -
Jan Jansen, Dipl.-Biol
The spatial, temporal and structural distribution of Antarctic seafloor biodiversity by Jan Jansen, Dipl.-Biol. Under the supervision of Craig R. Johnson Nicole A. Hill Piers K. Dunstan and John McKinlay Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Quantitative Antarctic Science Institute for Marine and Antarctic Studies (IMAS), University of Tasmania May 2019 In loving memory of my dad, whose passion for adventure, sport and all of nature’s life and diversity inspired so many kids, including me, whose positive and generous attitude touched so many people’s lives, and whose love for the ocean has carried over to me. The spatial, temporal and structural distribution of Antarctic seafloor biodiversity by Jan Jansen Abstract Biodiversity is nature’s most valuable resource. The Southern Ocean contains significant levels of marine biodiversity as a result of its isolated history and a combination of exceptional environmental conditions. However, little is known about the spatial and temporal distribution of biodiversity on the Antarctic continental shelf, hindering informed marine spatial planning, policy development underpinning regulation of human activity, and predicting the response of Antarctic marine ecosystems to environmental change. In this thesis, I provide detailed insight into the spatial and temporal distribution of Antarctic benthic macrofaunal and demersal fish biodiversity. Using data from the George V shelf region in East Antarctica, I address some of the main issues currently hindering understanding of the functioning of the Antarctic ecosystem and the distribution of biodiversity at the seafloor. The focus is on spatial biodiversity prediction with particular consideration given to previously unavailable environmental factors that are integral in determining where species are able to live, and the poor relationships often found between species distributions and other environmental factors. -
A GUIDE to IDENTIFICATION of FISHES CAUGHT ALONG with the ANTARCTIC KRILL Author(S) 1) Iwami, T
Document No. [ to be completed by the Secretariat ] WG-EMM-07/32 Date submitted [ to be completed by the Secretariat ] 1 July 2007 Language [ to be completed by the Secretariat ] Original: English Agenda Agenda Item No(s): 4.3 Title A GUIDE TO IDENTIFICATION OF FISHES CAUGHT ALONG WITH THE ANTARCTIC KRILL Author(s) 1) Iwami, T. and 2) M. Naganobu Affiliation(s) 1) Laboratory of Biology, Tokyo Kasei Gakuin University 2) National Research Institute of Far Seas Fisheries Published or accepted for publication elsewhere? Yes No x If published, give details ABSTRACT A field key to early life stages of Antarctic fish caught along with the Antarctic krill is produced. The key includes 8 families and 28 species mainly from the Atlantic sector of the Southern Ocean and uses distinguished characters which permit rapid field identification. In some cases, however, it is impossible to discriminate among species of the same family by remarkable characters. A species key is not shown for such resemble species and a brief summary of the main morphological features of species and genera is provided. SUMMARY OF FINDINGS AS RELATED TO NOMINATED AGENDA ITEMS Agenda Item Finding 4.3 We are producing a practical field key to juvenile fish caught along with the Antarctic Scientific krill. To our knowledge more than 40 species of fish have been found as by-catch. Observation However, the number of dominant fish species found in the krill catch never exceeds 20 species. An useful and practical identification key to these dominant species maybe facilitate the quantitative assessment of fish in the krill catch. -
Modeling the Evolutionary Loss of Erythroid Genes by Antarctic Icefishes: Analysis of the Hemogen Gene Using Transgenic and Mutant Zebrafish
Modeling the evolutionary loss of erythroid genes by Antarctic icefishes: analysis of the hemogen gene using transgenic and mutant zebrafish by Michael J. Peters B.S. in Biology, University of New Hampshire A dissertation submitted to The Faculty of the College of Science of Northeastern University in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 4, 2018 Dissertation directed by H. William Detrich, III Professor of Marine Molecular Biology and Biochemistry 1 Dedication For my Oma Oswald, who started this journey with me. 2 Acknowledgments I would like to thank my advisor, Dr. H William Detrich III, for encouraging me to be innovative and to pursue cutting-edge research. I thank the members of my committee, Drs. Erin Cram, Rebeca Rosengaus, Steven Vollmer, and Leonard Zon for their many helpful suggestions. I enjoyed working alongside Sandra Parker and Carmen Elenberger and appreciate their support. I also enjoyed working with many students including Caroline Benavides, Carolyn Dubnik, Carmen Elenberger, Laura Goetz, Urjeet Khanwalkar, Ben Moran, Alessia Santilli, Eileen Sheehan, Margaret Streeter, Kathleen Shusdock, and Sierra Smith. I especially thank Jonah Levin, who joined the lab as a high school student and has since continued working with me. I thank Corey Allard and Drs. Donald Yergeau and Jeffrey Grim for collecting samples that I used in my studies. I owe thanks to the staff of the Marine Science Center for their support, including Roberto Valdez, Sonya Simpson, Heather Sears, David Dawson, and Ryan Hill. I thank Drs. Joseph Ayers and Justin Ries for use of their facilities and Drs. -
Fishes of the Eastern Ross Sea, Antarctica
Polar Biol (2004) 27: 637–650 DOI 10.1007/s00300-004-0632-2 REVIEW Joseph Donnelly Æ Joseph J. Torres Tracey T. Sutton Æ Christina Simoniello Fishes of the eastern Ross Sea, Antarctica Received: 26 November 2003 / Revised: 16 April 2004 / Accepted: 20 April 2004 / Published online: 16 June 2004 Ó Springer-Verlag 2004 Abstract Antarctic fishes were sampled with 41 midwater in Antarctica is dominated by a few fish families and 6 benthic trawls during the 1999–2000 austral (Bathylagidae, Gonostomatidae, Myctophidae and summer in the eastern Ross Sea. The oceanic pelagic Paralepididae) with faunal diversity decreasing south assemblage (0–1,000 m) contained Electrona antarctica, from the Antarctic Polar Front to the continent (Ever- Gymnoscopelus opisthopterus, Bathylagus antarcticus, son 1984; Kock 1992; Kellermann 1996). South of the Cyclothone kobayashii and Notolepis coatsi. These were Polar Front, the majority of meso- and bathypelagic replaced over the shelf by notothenioids, primarily Ple- fishes have circum-Antarctic distributions (McGinnis uragramma antarcticum. Pelagic biomass was low and 1982; Gon and Heemstra 1990). Taken collectively, the concentrated below 500 m. The demersal assemblage fishes are significant contributors to the pelagic biomass was characteristic of East Antarctica and included seven and are important trophic elements, both as predators species each of Artedidraconidae, Bathydraconidae and and prey (Rowedder 1979; Hopkins and Torres 1989; Channichthyidae, ten species of Nototheniidae, and Lancraft et al. 1989, 1991; Duhamel 1998). Over the three species each of Rajidae and Zoarcidae. Common continental slope and shelf, notothenioids dominate the species were Trematomus eulepidotus (36.5%), T. scotti ichthyofauna (DeWitt 1970). Most members of this (32.0%), Prionodraco evansii (4.9%), T. -
Contribution to the Knowledge of the Parasitic Fauna of Fish Off Adelie Land, Antarctica
vol. 34, no. 4, pp. 429–435, 2013 doi: 10.2478/popore−2013−0023 Contribution to the knowledge of the parasitic fauna of fish off Adelie Land, Antarctica Krzysztof ZDZITOWIECKI 1 and Catherine OZOUF−COSTAZ 2 1 Instytut Parazytologii, Polska Akademia Nauk, ul. Twarda 51/55, 00−818 Warszawa, Poland <[email protected] > 2 Muséum National d’Histoire Naturelle, 43 Rue Cuvier, 75231 Paris Cedex 05, France <[email protected]> Abstract: In total, 42 fish belonging to 16 species were examined. All fish were infected. Parasitic worms were endoparasites: Digenea (eight species), Cestoda (three mixed groups of larval forms), Acanthocephala (two species) and Nematoda (one species in adult and one in larval stage, and two Contracaecum spp. in larval stage). Undetermined parasitic Cope− poda and Hirudinea were external parasites. Summing up previous and new data 25 species and mixed groups were found. Parasites in larval stage using fish as intermediate or paratenic hosts were more numerous than species maturing in fish. For example, 1913 nem− atodes Contracaecum spp. were recorded in one fish, whereas the digenean, Genolinea bowersi, was the most numerous maturing parasite (168 specimens in one fish). Key words: Antarctica, Adelie Land, fish parasites. Introduction Only limited data on the occurrence of helminths in fish at Adelie Land have previously been published. Ten species were recorded in fish examined in neigh− bouring sub−coastal waters, but without numerical data regarding infections (Johnston and Best 1937; Johnston 1938; Johnston and Mawson 1945; Prudhoe 1969; Prudhoe and Bray 1973). Recently Zdzitowiecki (1998, 2001), Zdzito− wiecki et al. (1998) and Laskowski et al. -
University of Groningen Frozen Desert Alive Flores, Hauke
University of Groningen Frozen desert alive Flores, Hauke IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2009 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Flores, H. (2009). Frozen desert alive: The role of sea ice for pelagic macrofauna and its predators. s.n. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 26-09-2021 Sorting samples. In the foreground: Antarctic krill Euphausia superba. CHAPTER 2 Diet of two icefish species from the South Shetland Islands and Elephant Island, Champsocephalus gunnari and Chaenocephalus aceratus in 2001 ‐ 2003 Hauke Flores, Karl‐Herman Kock, Sunhild Wilhelms & Christopher D. Jones Abstract The summer diet of two species of icefishes (Channichthyidae) from the South Shetland Islands and Elephant Island, Champsocephalus gunnari and Chaenocephalus aceratus, was investigated from 2001 to 2003. -
Advances in MARINE BIOLOGY
Advances in MARINE BIOLOGY VOLUME 46 ThisPageIntentionallyLeftBlank Advances in MARINE BIOLOGY Edited by A. J. SOUTHWARD Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK P. A. TYLER School of Ocean and Earth Science, University of Southampton, Southampton Oceanography Centre, European Way, Southampton, SO14 3ZH, UK C. M. YOUNG Oregon Institute of Marine Biology, University of Oregon P.O. Box 5389, Charleston, Oregon 97420, USA and L. A. FUIMAN Marine Science Institute, University of Texas at Austin, 750 Channel View Drive, Port Aransas, Texas 78373, USA Amsterdam – Boston – Heidelberg – London – New York – Oxford Paris – San Diego – San Francisco – Singapore – Sydney – Tokyo This book is printed on acid-free paper. ß 2003 Elsevier Science Ltd. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (222 Rosewood Drive, Danvers, Massachusetts 01923), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. -
(MSC) Announcement Comment Draft Report for Client Jeong Il
Marine Stewardship Council (MSC) Announcement Comment Draft Report for Client Jeong Il Corporation Antarctic krill fishery On Behalf of Jeong Il Corporation, Seoul Prepared by Control Union UK Ltd. September 2020 Authors: Henry Ernst Julian Addison Gudrun Gaudian Sophie des Clers Jung-Hee Cho Control Union UK Ltd. 56 High Street, Lymington, Hampshire, SO41 9AH United Kingdom Tel: 01590 613007 Fax: 01590 671573 Email: [email protected] Website: http.uk.controlunion.com Contents CONTENTS ...................................................................................................................................... 1 QA ............................................................................................................................................... 2 GLOSSARY ...................................................................................................................................... 1 1 EXECUTIVE SUMMARY ................................................................................................................ 3 2 REPORT DETAILS ....................................................................................................................... 6 2.1 Authorship and Peer Reviewers .............................................................................................. 6 2.2 Version details ......................................................................................................................... 8 3 UNIT(S) OF ASSESSMENT AND CERTIFICATION .................................................................................. -
Notothenioid Lepidonotothen Nudifrons
J Comp Physiol B (1999) 169: 597±604 Ó Springer-Verlag 1999 ORIGINAL PAPER I. Hardewig á L. S. Peck á H. O. PoÈ rtner Thermal sensitivity of mitochondrial function in the Antarctic Notothenioid Lepidonotothen nudifrons Accepted: 2 September 1999 Abstract The thermal sensitivity of mitochondrial Introduction function was investigated in the stenothermal Antarctic ®sh Lepidonotothen nudifrons. State 3 respiration in- The Antarctic marine fauna is constantly exposed to creases with increasing temperature between 0 °C and extremely low temperatures only ranging between 18 °C with a Q of 2.43±2.63. State 4 respiration in the 10 )1.8 °C and 1 °C. Organisms inhabiting the extreme presence of oligomycin, an inhibitor of mitochondrial Antarctic environment must have developed special ATP synthase, quanti®es the leakage of protons through physiological adaptations to overcome the adverse the inner mitochondrial membrane, which causes oxygen eects of low temperatures on metabolism. consumption without concomitant ATP production. Despite uncompensated low resting metabolic rates This parameter shows an unusually high Q of 10 (Clarke 1991), polar animals show a compensatory in- 4.21 0.42 (0±18 °C), which indicates that proton crease in tissue oxidative capacity (van Dijk et al. 1998), leakage does not depend merely on ion diusion but is which is re¯ected in higher mitochondrial densities an enzyme-catalysed process. The dierential thermal compared to temperate zone animals (Archer and sensitivity of oxidative phosphorylation (=state 3) and Johnston 1991; Johnston et al. 1998). Accordingly, some proton leakage (=state 4 in the presence of oligomycin) oxidative enzymes show 1.5 to 5-fold increased maximal leads to progressive uncoupling of the mitochondria and activities in Antarctic ®sh tissues (Crockett and Sidell decreased eciency of oxidative phosphorylation under 1990). -
Vascular Morphometry of the Retina in Antarctic Fishes Is Dependent Upon the Level of Hemoglobin in Circulation Jody M
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library 2006 Vascular Morphometry of the Retina in Antarctic Fishes is Dependent upon the Level of Hemoglobin in Circulation Jody M. Wujcik Follow this and additional works at: http://digitalcommons.library.umaine.edu/etd Part of the Ecology and Evolutionary Biology Commons, and the Oceanography Commons Recommended Citation Wujcik, Jody M., "Vascular Morphometry of the Retina in Antarctic Fishes is Dependent upon the Level of Hemoglobin in Circulation" (2006). Electronic Theses and Dissertations. 135. http://digitalcommons.library.umaine.edu/etd/135 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. VASCULAR MORPHOMETRY OF THE RETINA IN ANTARCTIC FISHES IS DEPENDENT UPON THE LEVEL OF HEMOGLOBIN IN CIRCULATION BY Jody M. Wujcik B.S. East Stroudsburg University, 2004 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Marine Biology) The Graduate School The University of Maine August, 2006 Advisory Committee: Bruce D. Sidell, Professor of Marine Sciences, Advisor Harold B. Dowse, Professor of Biological Sciences Seth Tyler, Professor of Zoology and Cooperating Professor of Marine Sciences VASCULAR MORPHOMETRY OF THE RETINA IN ANTARCTIC FISHES IS DEPENDENT UPON THE LEVEL OF HEMOGLOBIN IN CIRCULATION By Jody M. Wujcik Thesis Advisor: Dr. Bruce D. Side11 An Abstract of the Thesis Presented in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Marine Biology) August, 2006 Antarctic notothenioids express the circulating oxygen-binding protein hemoglobin (Hb) over a broad range of blood concentrations.