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271 REFERENCES Abdullah, S.K. and Taj-Aldeen, S.J. (1989

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271 REFERENCES Abdullah, S.K. and Taj-Aldeen, S.J. (1989). Extracellular enzymatic activity of aquatic and aero-aquatic conidial fungi. Hydrobiologia 174: 217–223. Abler, S.W. (2003). Ecology and taxonomy of Leptosphaerulina spp. associated with turfgrasses in the United States. M.S. Thesis. Faculty of the Virginia Polytechnic Institute and State University, Blacksburg, Virginia. Adams, D.J. (2004). Fungal cell wall chitinases and glucanases. Microbiology 150: 2029–2035. Agrios, G.N. (2005). Plant Pathology. 5th ed. Department of Plant Pathology, University of Florida. Elsevier Academic Press. Ahn, Y. (1996). Taxonomic revision of taxa originally described in Leptosphaeria from species in the Ranunculaceae, Papaveraceae and Magnoliaceae. Ph.D. Thesis. University of Illinois at Urbana-Campaign. Ainsworth, G.C. and Bisby, G.R. (1943). Dictionary of The Fungi. Wallingford, UK, CAB International. Alexopoulos, C.J., Mims, C.W. and Blackwell, M. (1996). Introductory Mycology. 4th ed. New York, John Wiley & Sons, Inc. Alias, S.A., Kuthubutheen, A.J.and Jones, E.B.G. (1995). Frequency of occurrence of fungi on wood in Malaysian mangroves. Hydrobiologia 295 : 97–106. Allen, R.B., Buchanan, P.K., Clinton, P.W. and Cone, A.J. (2000). Composition and diversity of fungi on decaying logs in a New Zealand temperate beech 272 (Nothofagus) forest. Canadian Journal of Forest Research 30: 1025–1033. Anderson, N.H. and Sedell, J.R. (1979). Detritus processing by macroinvertebrates in stream ecosystems. Annual Review of Entomology 24: 351–377. Ando, K. (1992). A Study of terrestrial aquatic Hyphomycetes. Transaction of Mycological Society of Japan 33: 415–425. Anonymous. (1995). JMP® Statistics and graphics guide. Version 3.1 of JMP, SAS Institute Inc., Cary, NC. Archer, A. W. (2001). The lichen genus Graphis (Graphidaceae). Australian Systematic Botany 14: 245–271. Arnold, A.E. and Herre, E.A. (2003). Canopy cover and leaf age affect colonization by tropical fungal endophytes: ecological pattern and process in Theobroma cacao (Malvaceae). Mycologia 95: 388–398. Arnold, A.E., Maynard, Z., Gilbert, G.S., Coley, P.D. and Kursar, T.A. (2000). Are tropical fungal endophytes hyperdiverse? Ecological Letters 3: 267–274. Auerswald, B. (1866). Delitschia nov.gen. e grege Sphaeriacearum simplicium. Hedwigia 5: 49–64. Azuma, H., García-Franco, J.G., Rico-Gray, V. and Thien, L.B. (2001). Molecular phylogeny of the Magnoliaceae: The biogeography of the tropical and temperate disjunctions. American Journal of Botany 88: 2275–2285. Azuma, H., Thien, L.B. and Kawano, S. (1999). Molecular phylogeny of Magnolia (Magnoliaceae) inferred from cpDNA sequences and evolutionary divergence of the floral scents. Journal of Plant Research 112: 291–306. 273 Baayen, R.P., Bonants, P.J.M., Verkley, G., Carroll, G.C., van der Aa, H.A., de Weerdt, M., van Brouwershaven, I.R., Schutte, G.C., Maccheroni, W.Jr., Glienke de Blanco, C. and Azevedo, J.L. (2002). Nonpathogenic isolates of the citrus black spot fungus, Guignardia citricarpa, identified as a cosmopolitan endophyte of woody plants, G. mangiferae (Phyllosticta capitalensis). Phytopathology 92: 464–477. Bahl, J., Jeewon, R. and Hyde, K.D. (2005). Phylogeny of Rosellinia capetribulensis sp. nov. and its allies (Xylariaceae). Mycologia 97: 1102–1110. Baker, W.A., Patridge, E.C. and Morgan-Jones, G. (2002). Notes on hyphomycetes. LXXXV. Junewangia, a genus in which to classify four Acrodictys species and a new taxon. Mycotaxon 81: 293–319. Bärlocher, F. and Kendrick, B. (1976). Hyphomycetes as intermediates of energy flow in streams. In E.B.G. Jones (Ed.), Recent Advances in Aquatic Mycology (pp. 435–447), London, Elek Science. Barr, M.E. (1979). A classification of loculoascomycetes. Mycologia 71: 935–957. Barr, M.E. (1980). On the family Tubeufiaceae (Pleosporales). Mycotaxon 12: 137– 167. Barr, M.E. (1982). On the Pleomassariaceae (Pleosporales) in north America. Mycotaxon 15: 345–348. Barr, M.E. (1987a). New taxa and combinations in the loculoascomycetes. Mycotaxon 29: 501–505. Barr, M.E. (1987b). Prodomus to Class Loculoascomycetes. Hamilton I. Newell, Inc.: Amherst, Massachussetts, U.S.A. 274 Barr, M.E. (1990). Prodomus to nonlichenzied, pyrenomycetous members of class hymenoascomycetes. Mycotaxon 39: 43–184. Barr, M.E. (1993a). Notes on the Pleomassariaceae. Mycotaxon 49: 129–142. Barr, M.E. (1993b). Redisposition of some taxa described by J.B. Ellis. Mycotaxon 46: 45–76. Barr, M.E. (1997). Notes on some ‘dimeriaceous’ fungi. Mycotaxon 65: 149–171. Barr, M.E., Rogerson, C.T., Smith, S.J. and Haines, J.H. (1986). An annotated catalog of the pyrenomycetes described by Charles H. Peck. Bulletin of the New York State Museum 459: 74 pp. Bennett, J.W. (1998). Mycotechnology: The role of fungi in biotechnology. Journal of Biotechnology 66: 101–107. Berbee, M.L. (1996). Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data. Molecular Biology and Evolution 13: 462–470. Berbee, M.L., Pirseyedi, M. and Hubbard, S. (1999). Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91: 964–977. Bernier, B. (1958). The production of polysaccharides by fungi active in the decomposition of wood and forest litter. Canadian Journal of Microbiology 4: 195–204. 275 Berres, M.E., Szabo, L.J. and McLaughlin, D.J. (1995). Phylogenetic relationships in auriculariaceous basidiomycees based on 25S ribosomal DNA sequences. Mycologia 87: 821–840. Besitulo, A.D., Sarma, V.V. and Hyde, K.D. (2002). Mangrove fungi from Siargao Island, Philippines. In K.D. Hyde (Ed.), Fungi in Marine Environments (pp. 267–283). Fungal Diversity Research Series 7, Hong Kong, Fungal Diversity Press. Bettucci, L. and Saravay, M. (1993). Endophytic fungi of Eucalyptus globulus: A preliminary study. Mycological Research 97: 679–682. Bhat, D.J. and Sutton, B.C. (1985). New and interesting hyphomycetes from Ethiopia. Transactions of the British Mycological Society 85: 107–122. Bilby, R.E. and Likens, G.E. (1980). Importance of organic debris dams in the structure and function of stream ecosystems. Ecology 61: 1107–1113. Bills, G.F. (1996). Isolation and analysis of endophytic fungal communities from woody plants. In S.C. Redlin and L.M. Carris (Eds.), Endophytic Fungi in Grasses and Woody Plants. Systematics, Ecology and Evolution (pp. 31í65), St. Paul, Minnesota, USA, APS Press. Bills, G.F. and Polishook, J.D. (1994). Abundance and diversity of microfungi in leaf litter of a lowland rain forest in Costa Rica. Mycologia 86: 187–198. Bills, G.F., Dombrowski, A., Peláez, F., Polishook, J. and An, Z. (2002). Recent and future disconeries of pharmacologically active metabolites from tropical fungi. In R. Watling, J.C. Frankland, A.M. Ainsworth, S. Isaac and C.H. Robinson 276 (Eds.), Tropical Mycology, Vol. 2, Micromycetes (pp. 165–194), Wallingford, UK, CABI Publishing. Blodgett, J.T., Swart, W.J., Louw, S.M. and Weeks, W.J. (2000). Species composition of endophytic fungi in Amaranthus hybridus leaves, petioles stems, and roots. Mycologia 92: 853í859. Bock, C. and Hauck, M. (2005). Graphis tetralocularis, a new lichen with four-celled ascospores from tropical Africa. The Lichenologist 35: 105–107. Boddy, L. (1986). Wood as a venue for fungal activity: study of decomposition processes and community dynamics. In F. Megusar and M. Gantar (Eds.), Perspectives in Microbial Ecology (pp. 394–400). Ljubljana, Slovania Society for Microbiology. Boddy, L. (2001). Fungal community ecology and wood decomposition processes in angiosperms: from standing tree to complete decay of coarse woody debris. Ecological Bulletins 49: 43–56. Boddy, L. and Griffith, G.S. (1989). Role of endophytes and latent invasion in the development of decay communities in sapwood of angiospermous trees. Sydowia 41: 41–73. Boddy, L. and Watkinson, S.C. (1995). Wood decomposition, higher fungi, and their role in nutrient redistribution. Canadian Journal of Botany 73: S1377–S1383. Boise, J. (1985). New combinations in the Pleomassariaceae and the Massarinaceae. Mycotaxon 22: 477–482. Boomsma, J.J., Borm, S.V. and Billen, J. (2002). The diversity of microorganisms associated with Acromyrmex leafcutter ants. BMC Evolutionary Biology 2: 9– 19. 277 Brayford, D. (1996). Fusarium-molecules maketh the mould? Sydowia 48: 163–183. Brummitt, R.K. (1992). Vascular Plant Families and Genera. Royal Botanic Gardens, Kew. Bucheli, E., Gautschi, B. and Shykoff, J.A. (2000). Host-specific differentiation in the anther smut fungus Microbotryum violaceum as revealed by microsatellites. Journal of Evolutionary Biology 13: 188–198. Bucheli, E., Gautschi, B. and Shykoff, J.A. (2001). Differences in population structure of the anther smut fungus Microbotryum violaceum on two closely related host species, Silene latifolia and S. dioica. Molecular Ecology 10: 285–294. Bucher, V.V.C., Hyde, K.D., Pointing, S.B. and Reddy, C.A. (2004). Production of wood decay enzymes, mass loss and lignin solubilization in wood by marine ascomycetes and their anamorphs. Fungal Diversity 15: 1–14. Burnett, J.H. (2003). Fungal Populations and Species. Oxford, Oxford University Press. Bussaban, B. (2005). Biodiversity of endophytic and saprobic fungi in wild and cultivates Zingiberaceae. Ph.D. Thesis. Graduate School, Chiang Mai University, Chiang Mai, Thailand. Bussaban, B., Lumyong, P., McKenzie, E.H.C., Hyde, K.D and Lumyong, S. (2004). Fungi on Zingiberaceae (ginger). In E.B.G. Jones, M. Tantichareon and K.D. Hyde (Eds.), Thai Fungal Diversity (pp. 189–195), BIOTEC, Bangkok, Thailand. Bussaban, B., Lumyong, S., Lumyong, P., Hyde, K.D and McKenzie, E.H.C. (2003). Three new species of Pyricularia are isolated as Zingiberaceous endophytes from Thailand. Mycologia 95: 521–526. 278 Bussaban, B., Lumyong, S., Lumyong, P., Seelanan, T., Park, D.C., McKenzie, E.H.C. and Hyde, K.D. (2005). Molecular and morphological characterization of Pyricularia and allied genera. Mycologia 97: 1002–1011. Cai, L., Hyde, K.D. and Tsui, C.K.M. (2006a). Genera of Freshwater Fungi. Fungal Diversity Research Series 17, Hong Kong, Fungal Diversity Press.
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  • Checklist of the Lichens and Allied Fungi of Kathy Stiles Freeland Bibb County Glades Preserve, Alabama, U.S.A

    Checklist of the Lichens and Allied Fungi of Kathy Stiles Freeland Bibb County Glades Preserve, Alabama, U.S.A

    Opuscula Philolichenum, 18: 420–434. 2019. *pdf effectively published online 2December2019 via (http://sweetgum.nybg.org/philolichenum/) Checklist of the lichens and allied fungi of Kathy Stiles Freeland Bibb County Glades Preserve, Alabama, U.S.A. J. KEVIN ENGLAND1, CURTIS J. HANSEN2, JESSICA L. ALLEN3, SEAN Q. BEECHING4, WILLIAM R. BUCK5, VITALY CHARNY6, JOHN G. GUCCION7, RICHARD C. HARRIS8, MALCOLM HODGES9, NATALIE M. HOWE10, JAMES C. LENDEMER11, R. TROY MCMULLIN12, ERIN A. TRIPP13, DENNIS P. WATERS14 ABSTRACT. – The first checklist of lichenized, lichenicolous and lichen-allied fungi from the Kathy Stiles Freeland Bibb County Glades Preserve in Bibb County, Alabama, is presented. Collections made during the 2017 Tuckerman Workshop and additional records from herbaria and online sources are included. Two hundred and thirty-eight taxa in 115 genera are enumerated. Thirty taxa of lichenized, lichenicolous and lichen-allied fungi are newly reported for Alabama: Acarospora fuscata, A. novomexicana, Circinaria contorta, Constrictolumina cinchonae, Dermatocarpon dolomiticum, Didymocyrtis cladoniicola, Graphis anfractuosa, G. rimulosa, Hertelidea pseudobotryosa, Heterodermia pseudospeciosa, Lecania cuprea, Marchandiomyces lignicola, Minutoexcipula miniatoexcipula, Monoblastia rappii, Multiclavula mucida, Ochrolechia trochophora, Parmotrema subsumptum, Phaeographis brasiliensis, Phaeographis inusta, Piccolia nannaria, Placynthiella icmalea, Porina scabrida, Psora decipiens, Pyrenographa irregularis, Ramboldia blochiana, Thyrea confusa, Trichothelium
  • Taxonomy and Multigene Phylogenetic Evaluation of Novel Species in Boeremia and Epicoccum with New Records of Ascochyta and Didymella (Didymellaceae)

    Taxonomy and Multigene Phylogenetic Evaluation of Novel Species in Boeremia and Epicoccum with New Records of Ascochyta and Didymella (Didymellaceae)

    Mycosphere 8(8): 1080–1101 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/8/9 Copyright © Guizhou Academy of Agricultural Sciences Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae) Jayasiri SC1,2, Hyde KD2,3, Jones EBG4, Jeewon R5, Ariyawansa HA6, Bhat JD7, Camporesi E8 and Kang JC1 1 Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guiyang, Guizhou Province 550025, P.R. China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3World Agro forestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201, P. R. China 4Botany and Microbiology Department, College of Science, King Saud University, Riyadh, 1145, Saudi Arabia 5Department of Health Sciences, Faculty of Science, University of Mauritius, Reduit, Mauritius 6Department of Plant Pathology and Microbiology, College of BioResources and Agriculture, National Taiwan University, No.1, Sec.4, Roosevelt Road, Taipei 106, Taiwan, ROC. 7No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha, 403108, India 89A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy; A.M.B. CircoloMicologico “Giovanni Carini”, C.P. 314, Brescia, Italy; Società per gliStudiNaturalisticidella Romagna, C.P. 144, Bagnacavallo (RA), Italy *Correspondence: [email protected] Jayasiri SC, Hyde KD, Jones EBG, Jeewon R, Ariyawansa HA, Bhat JD, Camporesi E, Kang JC 2017 – Taxonomy and multigene phylogenetic evaluation of novel species in Boeremia and Epicoccum with new records of Ascochyta and Didymella (Didymellaceae).
  • Diversity of Entomopathogens Fungi: Which Groups Conquered

    Diversity of Entomopathogens Fungi: Which Groups Conquered

    bioRxiv preprint doi: https://doi.org/10.1101/003756; this version posted April 4, 2014. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Diversity of entomopathogens Fungi: Which groups conquered the insect body? João P. M. Araújoa & David P. Hughesb aDepartment of Biology, Penn State University, University Park, Pennsylvania, United States of America. bDepartment of Entomology and Department of Biology, Penn State University, University Park, Pennsylvania, United States of America. [email protected]; [email protected]; Abstract The entomopathogenic Fungi comprise a wide range of ecologically diverse species. This group of parasites can be found distributed among all fungal phyla and as well as among the ecologically similar but phylogenetically distinct Oomycetes or water molds, that belong to a different kingdom (Stramenopila). As a group, the entomopathogenic fungi and water molds parasitize a wide range of insect hosts from aquatic larvae in streams to adult insects of high canopy tropical forests. Their hosts are spread among 18 orders of insects, in all developmental stages such as: eggs, larvae, pupae, nymphs and adults exhibiting completely different ecologies. Such assortment of niches has resulted in these parasites evolving a considerable morphological diversity, resulting in enormous biodiversity, much of which remains unknown. Here we gather together a huge amount of records of these entomopathogens to comparing and describe both their morphologies and ecological traits. These findings highlight a wide range of adaptations that evolved following the evolutionary transition to infecting the most diverse and widespread animals on Earth, the insects.
  • Pseudodidymellaceae Fam. Nov.: Phylogenetic Affiliations Of

    Pseudodidymellaceae Fam. Nov.: Phylogenetic Affiliations Of

    available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 87: 187–206 (2017). Pseudodidymellaceae fam. nov.: Phylogenetic affiliations of mycopappus-like genera in Dothideomycetes A. Hashimoto1,2, M. Matsumura1,3, K. Hirayama4, R. Fujimoto1, and K. Tanaka1,3* 1Faculty of Agriculture and Life Sciences, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori, 036-8561, Japan; 2Research Fellow of the Japan Society for the Promotion of Science, 5-3-1 Kojimachi, Chiyoda-ku, Tokyo, 102-0083, Japan; 3The United Graduate School of Agricultural Sciences, Iwate University, 18–8 Ueda 3 chome, Morioka, 020-8550, Japan; 4Apple Experiment Station, Aomori Prefectural Agriculture and Forestry Research Centre, 24 Fukutami, Botandaira, Kuroishi, Aomori, 036-0332, Japan *Correspondence: K. Tanaka, [email protected] Abstract: The familial placement of four genera, Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina, was taxonomically revised based on morphological observations and phylogenetic analyses of nuclear rDNA SSU, LSU, tef1, and rpb2 sequences. ITS sequences were also provided as barcode markers. A total of 130 sequences were newly obtained from 28 isolates which are phylogenetically related to Melanommataceae (Pleosporales, Dothideomycetes) and its relatives. Phylo- genetic analyses and morphological observation of sexual and asexual morphs led to the conclusion that Melanommataceae should be restricted to its type genus Melanomma, which is characterised by ascomata composed of a well-developed, carbonaceous peridium, and an aposphaeria-like coelomycetous asexual morph. Although Mycodidymella, Petrakia, Pseudodidymella, and Xenostigmina are phylogenetically related to Melanommataceae, these genera are characterised by epi- phyllous, lenticular ascomata with well-developed basal stroma in their sexual morphs, and mycopappus-like propagules in their asexual morphs, which are clearly different from those of Melanomma.
  • Taxonomic Utility of Old Names in Current Fungal Classification and Nomenclature: Conflicts, Confusion & Clarifications

    Taxonomic Utility of Old Names in Current Fungal Classification and Nomenclature: Conflicts, Confusion & Clarifications

    Mycosphere 7 (11): 1622–1648 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/7/11/2 Copyright © Guizhou Academy of Agricultural Sciences Taxonomic utility of old names in current fungal classification and nomenclature: Conflicts, confusion & clarifications Dayarathne MC1,2, Boonmee S1,2, Braun U7, Crous PW8, Daranagama DA1, Dissanayake AJ1,6, Ekanayaka H1,2, Jayawardena R1,6, Jones EBG10, Maharachchikumbura SSN5, Perera RH1, Phillips AJL9, Stadler M11, Thambugala KM1,3, Wanasinghe DN1,2, Zhao Q1,2, Hyde KD1,2, Jeewon R12* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan China3Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China 4Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China5Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, P.O. Box 34, Al-Khod 123,Oman 6Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, No 9 of ShuGuangHuaYuanZhangLu, Haidian District Beijing 100097, China 7Martin Luther University, Institute of Biology, Department of Geobotany, Herbarium, Neuwerk 21, 06099 Halle, Germany 8Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584CT Utrecht, The Netherlands. 9University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal. 10Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand 11Helmholtz-Zentrum für Infektionsforschung GmbH, Dept.