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Novel Trophic Niches Drive Variable Progress Towards Ecological Speciation Within an Adaptive Radiation of Pupfishes
Molecular Ecology (2014) 23, 1846–1862 doi: 10.1111/mec.12658 Novel trophic niches drive variable progress towards ecological speciation within an adaptive radiation of pupfishes CHRISTOPHER H. MARTIN*† and LAURA C. FEINSTEIN†‡ *Department of Environmental Science, Policy, and Management, University of California, Berkeley, CA 94720, USA, †Department of Evolution & Ecology, University of California, Davis, CA 94616, USA, ‡California Council on Science and Technology, 1130 K Street, Sacramento, CA 95814, USA Abstract Adaptive radiation is recognized by a rapid burst of phenotypic, ecological and species diversification. However, it is unknown whether different species within an adaptive radiation evolve reproductive isolation at different rates. We compared patterns of genetic differentiation between nascent species within an adaptive radiation of Cyprin- odon pupfishes using genotyping by sequencing. Similar to classic adaptive radiations, this clade exhibits rapid morphological diversification rates and two species are novel trophic specialists, a scale-eater and hard-shelled prey specialist (durophage), yet the radiation is <10 000 years old. Both specialists and an abundant generalist species all coexist in the benthic zone of lakes on San Salvador Island, Bahamas. Based on 13 912 single-nucleotide polymorphisms (SNPs), we found consistent differences in genetic differentiation between each specialist species and the generalist across seven lakes. The scale-eater showed the greatest genetic differentiation and clustered by species across lakes, whereas durophage populations often clustered with sympatric generalist populations, consistent with parallel speciation across lakes. However, we found strong evidence of admixture between durophage populations in different lakes, sup- porting a single origin of this species and genome-wide introgression with sympatric generalist populations. -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
Adaptive Radiation Driven by the Interplay of Eco-Evolutionary and Landscape Dynamics R
Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics R. Aguilée, D. Claessen, A. Lambert To cite this version: R. Aguilée, D. Claessen, A. Lambert. Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics. Evolution - International Journal of Organic Evolution, Wiley, 2013, 67 (5), pp.1291-1306. 10.1111/evo.12008. hal-00838275 HAL Id: hal-00838275 https://hal.archives-ouvertes.fr/hal-00838275 Submitted on 13 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics Robin Aguil´eea;b;∗, David Claessenb and Amaury Lambertc;d Published in Evolution, 2013, 67(5): 1291{1306 with doi: 10.1111/evo.12008 a Institut des Sciences de l'Evolution´ de Montpellier (UMR 5554), Univ Montpellier II, CNRS, Montpellier, France b Laboratoire Ecologie´ et Evolution´ (UMR 7625), UPMC Univ Paris 06, Ecole´ Normale Sup´erieure,CNRS, Paris, France c Laboratoire Probabilit´eset Mod`elesAl´eatoires(LPMA) CNRS UMR 7599, UPMC Univ Paris 06, Paris, France. d Center for Interdisciplinary Research in Biology (CIRB) CNRS UMR 7241, Coll`egede France, Paris, France ∗ Corresponding author. -
Reticulate Evolutionary History in a Recent Radiation of Montane
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.12.426362; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Reticulate Evolutionary History in a Recent Radiation of Montane 2 Grasshoppers Revealed by Genomic Data 3 4 VANINA TONZO1, ADRIÀ BELLVERT2 AND JOAQUÍN ORTEGO1 5 6 1 Department of Integrative Ecology, Estación Biológica de Doñana (EBD-CSIC); Avda. 7 Américo Vespucio, 26 – 41092; Seville, Spain 8 2 Department of Evolutionary Biology, Ecology and Environmental Sciences, and 9 Biodiversity Research Institute (IRBio), Universitat de Barcelona; Av. Diagonal, 643 – 10 08028; Barcelona, Spain 11 12 13 Author for correspondence: 14 Vanina Tonzo 15 Estación Biológica de Doñana, EBD-CSIC, 16 Avda. Américo Vespucio 26, E-41092 Seville, Spain 17 E-mail: [email protected] 18 Phone: +34 954 232 340 19 20 21 22 Running title: Reticulate evolution in a grasshopper radiation bioRxiv preprint doi: https://doi.org/10.1101/2021.01.12.426362; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 23 Abstract 24 Inferring the ecological and evolutionary processes underlying lineage and phenotypic 25 diversification is of paramount importance to shed light on the origin of contemporary 26 patterns of biological diversity. However, reconstructing phylogenetic relationships in 27 recent evolutionary radiations represents a major challenge due to the frequent co- 28 occurrence of incomplete lineage sorting and introgression. -
Adaptive Radiation
ADAPTIVE RADIATION Rosemary G. Gillespie,* Francis G. Howarth,† and George K. Roderick* *University of California, Berkeley and †Bishop Museum I. History of the Concept ecological release Expansion of habitat, or ecological II. Nonadaptive Radiations environment, often resulting from release of species III. Factors Underlying Adaptive Radiation from competition. IV. Are Certain Taxa More Likely to Undergo Adap- founder effect Random genetic sampling in which tive Radiation Than Others? only a few ‘‘founders’’ derived from a large popula- V. How Does Adaptive Radiation Get Started? tion initiate a new population. Since these founders VI. The Processes of Adaptive Radiation: Case carry only a small fraction of the parental popula- Studies tion’s genetic variability, radically different gene VII. The Future frequencies can become established in the new colony. key innovation A trait that increases the efficiency with GLOSSARY which a resource is used and can thus allow entry into a new ecological zone. adaptive shift A change in the nature of a trait (mor- natural selection The differential survival and/or re- phology, ecology, or behavior) that enhances sur- production of classes of entities that differ in one or vival and/or reproduction in an ecological environ- more hereditary characteristics. ment different from that originally occupied. sexual selection Selection that acts directly on mating allopatric speciation The process of genetic divergence success through direct competition between mem- between geographically separated populations lead- bers of one sex for mates or through choices made ing to distinct species. between the two sexes or through a combination of character displacement Divergence in a morphological both modes. -
Adaptive Radiation Adaptive Radiation by Prof
Workshop on Population and Speciation Genomics 2020 W. Salzburger | Adaptive Radiation Adaptive Radiation by Prof. Walter Salzburger Zoological Institute, University of Basel, Vesalgasse 1, 4051 Basel, Switzerland The diversity of life on Earth is governed, at the MACROEVOLUTIONARY scale, by two antagonistic ———————— MACROEVOLUTION processes: Evolutionary radiations increase and extinction events decrease the organismal diversity on our Evolution on the grand scale, that is, planet through time. Evolutionary radiations are termed adaptive radiations if new lifeforms emerge evolution at the level rapidly through the extensive ecological diversification of an organismal lineage. of species and above. Examples of adaptive radiations ECOLOGICAL NICHE The relational position of a species Adaptive radiation refers to the evolution of ecological and morphological disparity within a rapidly or population in an diversifying lineage. It is the diversification of an ancestral species into an array of new species that ecosystem. It includes the interactions of all occupy various ECOLOGICAL NICHES and that differ in traits used to exploit those niches. Adaptive biotic and abiotic radiation includes the origination of both new species (speciation) and phenotypic disparity. factors that determine how a species meets Archetypal examples of adaptive radiations include Darwin’s finches on the Galápagos archipelago; its needs for food and shelter, how it silversword plants on Hawaii; anole lizards on the islands of the Caribbean; threespine stickleback fish survives, and how it in north temperate waters; and cichlid fishes in the East Africa Great Lakes and in various tropical reproduces. crater lakes (see FIGURE 1). Adaptive radiations are also visible in the FOSSIL record. For example, the FOSSIL CAMBRIAN EXPLOSION is considered an adaptive radiation. -
Testing Island Biogeography Theory with an Eco-Evolutionary
bioRxiv preprint doi: https://doi.org/10.1101/100289; this version posted January 13, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 1 Original Article 2 Effects of time and isolation on plant diversity: testing island biogeography 3 theory with an eco-evolutionary model 4 Authors: Juliano Sarmento Cabral1,2,3*, Robert J. Whittaker4,5, Kerstin Wiegand6, Holger Kreft2 5 1 Ecosystem Modeling, Center of Computation and Theoretical Biology, University of Würzburg, 6 Campus Hubland-Nord, Building 32, D- 97074, Würzburg, Germany. 7 2 Department of Biodiversity, Macroecology & Biogeography, University of Göttingen, 8 Büsgenweg 1, D-37077, Göttingen, Germany. 9 3 Synthesis Centre of the German Centre for Integrative Biodiversity Research (iDiv), Deutscher 10 Platz 5e, D-04103 Leipzig, Germany. 11 4 Conservation Biogeography and Macroecology Group, School of Geography and the 12 Environment, University of Oxford, South Parks Road, Oxford, OX1 3QY, UK. 13 5 Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, 14 University of Copenhagen, Universitetsparken 15, 2100 Copenhagen Ø, Denmark. 15 6 Ecosystem Modelling, Büsgen-Institute, University of Göttingen, Büsgenweg 4, D-37077, 16 Göttingen, Germany. 17 *Corresponding author: Ecosystem Modeling, Center for Computation and Theoretical Biology, 18 University of Würzburg, am Hubland-Nord 32, D- 97074, Würzburg, Germany. E-mail: 19 [email protected] 20 bioRxiv preprint doi: https://doi.org/10.1101/100289; this version posted January 13, 2017. -
Graptoloid Diversity and Disparity Became Decoupled During the Ordovician Mass Extinction
Graptoloid diversity and disparity became decoupled during the Ordovician mass extinction David W. Bapsta,b,1, Peter C. Bullockc, Michael J. Melchinc, H. David Sheetsd, and Charles E. Mitchellb aDepartment of the Geophysical Sciences, University of Chicago, Chicago, IL 60637; bDepartment of Geology, University at Buffalo, The State University of New York, Buffalo, NY 14260; cDepartment of Earth Sciences, St. Francis Xavier University, Antigonish, NS, Canada B2G 2W5; and dDepartment of Physics, Canisius College, Buffalo, NY 14208 Edited by Douglas H. Erwin, Smithsonian National Museum of Natural History, Washington, DC, and accepted by the Editorial Board January 19, 2012 (received for review August 31, 2011) The morphological study of extinct taxa allows for analysis of a HME (Fig. 1), they were driven to extinction during the Hir- diverse set of macroevolutionary hypotheses, including testing for nantian glaciation (7, 15). In contrast, the Neograptina simulta- change in the magnitude of morphological divergence, extinction neously speciated rapidly after the first extinction episode of the selectivity on form, and the ecological context of radiations. Late HME (15). Ordovician graptoloids experienced a phylogenetic bottleneck at The changes in morphological diversity during this interval have the Hirnantian mass extinction (∼445 Ma), when a major clade of not been studied quantitatively. Previous work suggests that only a graptoloids was driven to extinction while another clade simulta- single morphotype survived the HME (16, 17) and that the number neously radiated. In this study, we developed a dataset of 49 eco- of morphotypes recovered in the Silurian. Mitchell (18) demon- logically relevant characters for 183 species with which we tested strated that the Silurian Neograptina evolved a number of mor- i two main hypotheses: ( ) could the biased survival of one grapto- phologies that converged upon pre-Hirnantian diplograptine loid clade over another have resulted from morphological selectiv- forms. -
Adaptive Radiation Causes
NEET (/neet/) > NEET Study Material (/neet/neet-study-material/) > NEET Biology (/neet/neet-biology/) > Adaptive Radiation (/neet/important-notes-of-biology-for-neet- adaptive-radiation/) What is adaptive radiation? Adaptive radiation is the evolutionary diversification of many related species from a common ancestral species in a relatively short period. Osborne (1902) coined the term “Adaptive Radiation”. He stated that each large and isolated region, with sufficiently varied topogr aphy, soil, vegetation, climate, will lead to organisms with diverse characteristics. Darwin had called it “Divergence”, i.e. the tendency in an organism descended from the same ancestor to diverge in character as they undergo changes. Adaptive radiation plays a significant role in macroevolution. Adaptive radiation gives rise to species diversity in a geographical area. Adaptiv e Radiation Causes: Adaptive radiation is more common during major environmental changes and physical disturbances. It also helps an organism to successfully spread into other environments. Furthermore, it leads to speciation. Moreover, it also leads to phenotypically dissimilar, but related species. Major causes of adaptive radiation are: Ecological opportunities: When an organism enters a new area with lots of ecological opportunities, species diversify to exploit these resources. When a group of organism enter a new adaptive zone then organisms tend to adapt themselves differently. It results in adaptive divergence An adaptive zone is an unexploited area with numerous ecological opportunities, e.g. nocturnal flying to catch small insects, grazing on the grass while migrating across Savana, and swimming at the ocean’s surface to filter out Plankton Vacant adaptive zones are more common on islands, as fewer species inhabit islands compared to mainland When adaptive zones are empty, they get filled by species, which diversify quickly, e.g. -
(Lepidoptera: Gracillariidae: Epicephala) and Leafflower Trees (Phyllanthaceae: Phyllanthus Sensu Lato [Glochidion]) in Southeastern Polynesia
Coevolutionary Diversification of Leafflower Moths (Lepidoptera: Gracillariidae: Epicephala) and Leafflower Trees (Phyllanthaceae: Phyllanthus sensu lato [Glochidion]) in Southeastern Polynesia By David Howard Hembry A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Environmental Science, Policy, and Management in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Rosemary Gillespie, Chair Professor Bruce Baldwin Professor Patrick O’Grady Spring 2012 1 2 Abstract Coevolution between phylogenetically distant, yet ecologically intimate taxa is widely invoked as a major process generating and organizing biodiversity on earth. Yet for many putatively coevolving clades we lack knowledge both of their evolutionary history of diversification, and the manner in which they organize themselves into patterns of interaction. This is especially true for mutualistic associations, despite the fact that mutualisms have served as models for much coevolutionary research. In this dissertation, I examine the codiversification of an obligate, reciprocally specialized pollination mutualism between leafflower moths (Lepidoptera: Gracillariidae: Epicephala) and leafflower trees (Phyllanthaceae: Phyllanthus sensu lato [Glochidion]) on the oceanic islands of southeastern Polynesia. Leafflower moths are the sole known pollinators of five clades of leafflowers (in the genus Phyllanthus s. l., including the genera Glochidion and Breynia), and thus this interaction is considered to be obligate. Female moths actively transfer pollen from male flowers to female flowers, using a haired proboscis to transfer pollen into the recessed stigmatic surface at the end of the fused stylar column. The moths then oviposit into the flowers’ ovaries, and the larva which hatches consumes a subset, but not all, of the developing fruit’s seed set. -
Phylogenetic Comparative Methods
Phylogenetic Comparative Methods Luke J. Harmon 2019-3-15 1 Copyright This is book version 1.4, released 15 March 2019. This book is released under a CC-BY-4.0 license. Anyone is free to share and adapt this work with attribution. ISBN-13: 978-1719584463 2 Acknowledgements Thanks to my lab for inspiring me, my family for being my people, and to the students for always keeping us on our toes. Helpful comments on this book came from many sources, including Arne Moo- ers, Brian O’Meara, Mike Whitlock, Matt Pennell, Rosana Zenil-Ferguson, Bob Thacker, Chelsea Specht, Bob Week, Dave Tank, and dozens of others. Thanks to all. Later editions benefited from feedback from many readers, including Liam Rev- ell, Ole Seehausen, Dean Adams and lab, and many others. Thanks! Keep it coming. If you like my publishing model try it yourself. The book barons are rich enough, anyway. Except where otherwise noted, this book is licensed under a Creative Commons Attribution 4.0 International License. To view a copy of this license, visit https: //creativecommons.org/licenses/by/4.0/. 3 Table of contents Chapter 1 - A Macroevolutionary Research Program Chapter 2 - Fitting Statistical Models to Data Chapter 3 - Introduction to Brownian Motion Chapter 4 - Fitting Brownian Motion Chapter 5 - Multivariate Brownian Motion Chapter 6 - Beyond Brownian Motion Chapter 7 - Models of discrete character evolution Chapter 8 - Fitting models of discrete character evolution Chapter 9 - Beyond the Mk model Chapter 10 - Introduction to birth-death models Chapter 11 - Fitting birth-death models Chapter 12 - Beyond birth-death models Chapter 13 - Characters and diversification rates Chapter 14 - Summary 4 Chapter 1: A Macroevolutionary Research Pro- gram Section 1.1: Introduction Evolution is happening all around us. -
Repeated Adaptive Divergence of Microhabitat Specialization in Avian Feather Lice Kevin P Johnson1*, Scott M Shreve2 and Vincent S Smith3
Johnson et al. BMC Biology 2012, 10:52 http://www.biomedcentral.com/1741-7007/10/52 RESEARCH ARTICLE Open Access Repeated adaptive divergence of microhabitat specialization in avian feather lice Kevin P Johnson1*, Scott M Shreve2 and Vincent S Smith3 Abstract Background: Repeated adaptive radiations are evident when phenotypic divergence occurs within lineages, but this divergence into different forms is convergent when compared across lineages. Classic examples of such repeated adaptive divergence occur in island (for example, Caribbean Anolis lizards) and lake systems (for example, African cichlids). Host-parasite systems in many respects are analogous to island systems, where host species represent isolated islands for parasites whose life cycle is highly tied to that of their hosts. Thus, host-parasite systems might exhibit interesting cases of repeated adaptive divergence as seen in island and lake systems. The feather lice of birds spend their entire life cycle on the body of the host and occupy distinct microhabitats on the host: head, wing, body and generalist. These microhabitat specialists show pronounced morphological differences corresponding to how they escape from host preening. We tested whether these different microhabitat specialists were a case of repeated adaptive divergence by constructing both morphological and molecular phylogenies for a diversity of avian feather lice, including many examples of head, wing, body and generalist forms. Results: Morphological and molecular based phylogenies were highly incongruent, which could be explained by rampant convergence in morphology related to microhabitat specialization on the host. In many cases lice from different microhabitat specializations, but from the same group of birds, were sister taxa.