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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Soil Calcium Availability Influences Shell Ecophenotype Formation in the Sub-Antarctic Land Snail, Notodiscus Hookeri
Soil Calcium Availability Influences Shell Ecophenotype Formation in the Sub-Antarctic Land Snail, Notodiscus hookeri Maryvonne Charrier1*, Arul Marie2, Damien Guillaume3, Laurent Bédouet4, Joseph Le Lannic5, Claire Roiland6, Sophie Berland4, Jean-Sébastien Pierre1, Marie Le Floch6, Yves Frenot7, Marc Lebouvier8 1 Université de Rennes 1, Université Européenne de Bretagne, UMR CNRS 6553, Campus de Beaulieu, Rennes, France, 2 Muséum National d’Histoire Naturelle, Plateforme de Spectrométrie de Masse et de Protéomique, UMR CNRS 7245, Département Régulation Développement et Diversité Moléculaire, Paris, France, 3 Université de Toulouse, Observatoire Midi-Pyrénées, Géosciences Environnement Toulouse, UMR 5563 (CNRS/UPS/IRD/CNES), Toulouse, France., 4 Muséum National d’Histoire Naturelle, Biologie des Organismes et Ecosystèmes Aquatiques, UMR CNRS 7208 / IRD 207, Paris, France, 5 Université de Rennes 1, Université Européenne de Bretagne, Service Commun de Microscopie Electronique à Balayage et micro-Analyse, Rennes, France, 6 Université de Rennes 1, Université Européenne de Bretagne, Sciences Chimiques de Rennes, UMR CNRS 6226, Campus de Beaulieu, Rennes, France, 7 Institut Polaire Français Paul Émile Victor, Technopôle Brest-Iroise, Plouzané, France, 8 Université de Rennes 1, Université Européenne de Bretagne, UMR CNRS 6553, Station Biologique, Paimpont, France Abstract Ecophenotypes reflect local matches between organisms and their environment, and show plasticity across generations in response to current living conditions. Plastic responses in shell morphology and shell growth have been widely studied in gastropods and are often related to environmental calcium availability, which influences shell biomineralisation. To date, all of these studies have overlooked micro-scale structure of the shell, in addition to how it is related to species responses in the context of environmental pressure. -
Part 4 Appendices
Part 4 Appendices HEARD ISLAND AND MCDONALD ISLANDS MARINE RESERVE 139 Appendix 1. Proclamation of Heard Island and McDonald Islands Marine Reserve 140 MANAGEMENT PLAN HEARD ISLAND AND MCDONALD ISLANDS MARINE RESERVE 141 142 MANAGEMENT PLAN Appendix 2. Native Fauna of the HIMI Marine Reserve Listed Under the EPBC Act Scientific Name Common Name Birds recorded as breeding Aptenodytes patagonicus king penguin S Catharacta lonnbergi subantarctic skua S Daption capense cape petrel S Diomeda exulans wandering albatross V S M B J A Diomeda melanophrys black–browed albatross S M B A Eudyptes chrysocome southern rockhopper penguin S Eudyptes chrysolophus macaroni penguin S Larus dominicanus kelp gull S Macronectes giganteus southern giant petrel E S M B A Oceanites oceanicus Wilson’s storm petrel S M J Pachyptila crassirostris fulmar prion S Pachyptila desolata Antarctic prion S Pelecanoides georgicus South Georgian diving petrel S Pelecanoides urinatrix common diving petrel S Phalacrocorax atriceps (e) Heard Island cormorant V S Phoebetria palpebrata light mantled sooty albatross S M B A Pygoscelis papua gentoo penguin S Sterna vittata Antarctic tern V S Non–breeding birds Catharacta maccormicki south polar skua S M J Diomedea epomophora southern royal albatross V S M B A Fregetta grallaria white–bellied storm petrel S Fregetta tropica black–bellied storm petrel S Fulmarus glacialoides southern fulmar S Garrodia nereis grey–backed storm petrel S Halobaena caerulea blue petrel V S Macronectes halli northern giant petrel V S M B A Pachyptila belcheri -
A Genus-Level Supertree of Adephaga (Coleoptera) Rolf G
ARTICLE IN PRESS Organisms, Diversity & Evolution 7 (2008) 255–269 www.elsevier.de/ode A genus-level supertree of Adephaga (Coleoptera) Rolf G. Beutela,Ã, Ignacio Riberab, Olaf R.P. Bininda-Emondsa aInstitut fu¨r Spezielle Zoologie und Evolutionsbiologie, FSU Jena, Germany bMuseo Nacional de Ciencias Naturales, Madrid, Spain Received 14 October 2005; accepted 17 May 2006 Abstract A supertree for Adephaga was reconstructed based on 43 independent source trees – including cladograms based on Hennigian and numerical cladistic analyses of morphological and molecular data – and on a backbone taxonomy. To overcome problems associated with both the size of the group and the comparative paucity of available information, our analysis was made at the genus level (requiring synonymizing taxa at different levels across the trees) and used Safe Taxonomic Reduction to remove especially poorly known species. The final supertree contained 401 genera, making it the most comprehensive phylogenetic estimate yet published for the group. Interrelationships among the families are well resolved. Gyrinidae constitute the basal sister group, Haliplidae appear as the sister taxon of Geadephaga+ Dytiscoidea, Noteridae are the sister group of the remaining Dytiscoidea, Amphizoidae and Aspidytidae are sister groups, and Hygrobiidae forms a clade with Dytiscidae. Resolution within the species-rich Dytiscidae is generally high, but some relations remain unclear. Trachypachidae are the sister group of Carabidae (including Rhysodidae), in contrast to a proposed sister-group relationship between Trachypachidae and Dytiscoidea. Carabidae are only monophyletic with the inclusion of a non-monophyletic Rhysodidae, but resolution within this megadiverse group is generally low. Non-monophyly of Rhysodidae is extremely unlikely from a morphological point of view, and this group remains the greatest enigma in adephagan systematics. -
Rock Garden Quarterly
ROCK GARDEN QUARTERLY VOLUME 53 NUMBER 1 WINTER 1995 COVER: Aquilegia scopulorum with vespid wasp by Cindy Nelson-Nold of Lakewood, Colorado All Material Copyright © 1995 North American Rock Garden Society ROCK GARDEN QUARTERLY BULLETIN OF THE NORTH AMERICAN ROCK GARDEN SOCIETY formerly Bulletin of the American Rock Garden Society VOLUME 53 NUMBER 1 WINTER 1995 FEATURES Alpine Gesneriads of Europe, by Darrell Trout 3 Cassiopes and Phyllodoces, by Arthur Dome 17 Plants of Mt. Hutt, a New Zealand Preview, by Ethel Doyle 29 South Africa: Part II, by Panayoti Kelaidis 33 South African Sampler: A Dozen Gems for the Rock Garden, by Panayoti Kelaidis 54 The Vole Story, by Helen Sykes 59 DEPARTMENTS Plant Portrait 62 Books 65 Ramonda nathaliae 2 ROCK GARDEN QUARTERLY VOL. 53:1 ALPINE GESNERIADS OF EUROPE by Darrell Trout J. he Gesneriaceae, or gesneriad Institution and others brings the total family, is a diverse family of mostly Gesneriaceae of China to a count of 56 tropical and subtropical plants with genera and about 413 species. These distribution throughout the world, should provide new horticultural including the north and south temper• material for the rock garden and ate and tropical zones. The 125 genera, alpine house. Yet the choicest plants 2850-plus species include terrestrial for the rock garden or alpine house and epiphytic herbs, shrubs, vines remain the European genera Ramonda, and, rarely, small trees. Botanically, Jancaea, and Haberlea. and in appearance, it is not always easy to separate the family History Gesneriaceae from the closely related The family was named for Konrad Scrophulariaceae (Verbascum, Digitalis, von Gesner, a sixteenth century natu• Calceolaria), the Orobanchaceae, and ralist. -
Size Class Structure, Growth Rates, and Orientation of the Central Andean Cushion Azorella Compacta
Size class structure, growth rates, and orientation of the central Andean cushion Azorella compacta Catherine Kleier1, Tim Trenary2, Eric A. Graham3, William Stenzel4 and Philip W. Rundel5 1 Department of Biology, Regis University, Denver, CO, USA 2 Department of Mathematics, Regis University, Denver, CO, USA 3 Nexleaf Analytics, Los Angeles, CA, USA 4 Department of Computer Information Systems, Metropolitan State University, Denver, CO, USA 5 Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA ABSTRACT Azorella compacta (llareta; Apiaceae) forms dense, woody, cushions and characterizes the high elevation rocky slopes of the central Andean Altiplano. Field studies of an elevational gradient of A. compacta within Lauca National Park in northern Chile found a reverse J-shape distribution of size classes of individuals with abundant small plants at all elevations. A new elevational limit for A. compacta was established at 5,250 m. A series of cushions marked 14 years earlier showed either slight shrinkage or small degrees of growth up to 2.2 cm yr−1. Despite their irregularity in growth, cushions of A. compacta show a strong orientation, centered on a north-facing aspect and angle of about 20◦ from horizontal. This exposure to maximize solar irradiance closely matches previous observations of a population favoring north-facing slopes at a similar angle. Populations of A. compacta appear to be stable, or even expanding, with young plants abundant. Subjects Ecology Keywords Andes, Parque Nacional Lauca, Growth rate, Cushion plant, Puna Submitted 19 November 2014 Accepted 27 February 2015 Published 17 March 2015 INTRODUCTION Azorella compacta (Apiaceae), a large woody cushion plant, forms an iconic species of the Corresponding author Catherine Kleier, [email protected] Altiplano Plateau of northern Chile, Bolivia, Argentina, and Peru (Kleier& Rundel, 2004 ). -
Taxonomy and Population Genetics of the Flightless Moth Genus, Pringleophaga in the Sub-Antarctic
Taxonomy and Population Genetics of the Flightless Moth Genus, Pringleophaga in the Sub-Antarctic by Catharina Wilhelmina Groenewald Thesis presented in partial fulfilment of the requirements for the degree "Master of Science in Zoology" at Stellenbosch University Supervisor: Prof. Bettine Jansen van Vuuren Co-supervisor: Prof. Steven L. Chown Faculty of Science March 2013 Stellenbosch University http://scholar.sun.ac.za II DECLARATION By submitting this thesis/dissertation electronically, I declare that the entirety of the work contained therein is my own, original work, that I am the sole author thereof (save to the extent explicitly otherwise stated), that reproduction and publication thereof by Stellenbosch University will not infringe any third party rights and that I have not previously in its entirety or in part submitted it for obtaining any qualification. March 2013 ………………………………………. Catharina Wilhelmina Groenewald Copyright © 2013 Stellenbosch University All rights reserved Stellenbosch University http://scholar.sun.ac.za III ABSTRACT Sub-Antarctic Islands are of considerable conservation importance due to their high endemicity and unique ecosystems. Furthermore, the rich geological and glaciological histories of these islands provide a unique platform to study the biodiversity and biogeography of its biota. Sub-Antarctic islands are divided into three biogeographic regions; the South Indian Ocean Province includes the Prince Edward Islands, Îles Kerguelen, Îles Crozet, Heard Island and McDonald Island. One of the taxa that have long fascinated biogeographers and taxonomists alike is the flightless moth, genus Pringleophaga, which is endemic to the Kerguelen, Crozet and Prince Edward Islands. This study addressed three questions relating to the genus Pringleophaga at various spatial and evolutionary scales. -
Leptinella Squalida Subsp. Squalida
Leptinella squalida subsp. squalida SYNONYMS Cotula squalida (Hook.f.) Hook.f. FAMILY Asteraceae AUTHORITY Leptinella squalida Hook.f. subsp. squalida FLORA CATEGORY Vascular – Native ENDEMIC TAXON Yes ENDEMIC GENUS No ENDEMIC FAMILY No STRUCTURAL CLASS Herbs - Dicotyledonous composites NVS CODE LEPSSS CHROMOSOME NUMBER 2n = 260 Leptinella squalida subsp. squalida showing CURRENT CONSERVATION STATUS growth habit, Cultivated Hamilton, ex Waikato 2012 | Not Threatened River. Photographer: Peter de Lange PREVIOUS CONSERVATION STATUSES 2009 | Not Threatened 2004 | Not Threatened DISTRIBUTION Endemic. North, South (North-West Nelson only) and Chatham Islands. In North Island uncommon north of the Waikato. HABITAT Mostly coastal or inland (0-300 m a.s.l.), in open turf, on coastal cliffs, in coastal turf, along river beds or in open grassland and open, damp places within shrubland and lowland forest. In some urban areas reported as as a lawn weed. Often found growing with Hydrocotyle heteromeria A.Rich. and H. microphylla A.Cunn. Some forms of L. squalida subsp. squalida have also been gathered from subalpine to alpine habitats in the central North Island. Leptinella squalida subsp. squalida close up of flowering capitula, Nov 2006, Terawhiti Station, South Wellington Coast. Photographer: Jeremy Rolfe FEATURES Dioecious, widely creeping, fast-growing perennial herb forming dense monospecific turfs or intermingled with other turf species. Rhizomes at or near soil surface, green, dark green to red-green, flexible, pilose hairy; branches usually single at flowering nodes; leaves in two rows, single at apex, 5-30 mm apart. Short shoots alternate on both sides of the rhizomes with distant leaves. Roots slender and weak, up to 0.8 mm diameter. -
Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa
Systematic Botany (2010), 35(2): pp. 425–441 © Copyright 2010 by the American Society of Plant Taxonomists Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa David C. Tank 1,2,3 and Michael J. Donoghue 1 1 Peabody Museum of Natural History & Department of Ecology & Evolutionary Biology, Yale University, P. O. Box 208106, New Haven, Connecticut 06520 U. S. A. 2 Department of Forest Resources & Stillinger Herbarium, College of Natural Resources, University of Idaho, P. O. Box 441133, Moscow, Idaho 83844-1133 U. S. A. 3 Author for correspondence ( [email protected] ) Communicating Editor: Javier Francisco-Ortega Abstract— Previous attempts to resolve relationships among the primary lineages of Campanulidae (e.g. Apiales, Asterales, Dipsacales) have mostly been unconvincing, and the placement of a number of smaller groups (e.g. Bruniaceae, Columelliaceae, Escalloniaceae) remains uncertain. Here we build on a recent analysis of an incomplete data set that was assembled from the literature for a set of 50 campanulid taxa. To this data set we first added newly generated DNA sequence data for the same set of genes and taxa. Second, we sequenced three additional cpDNA coding regions (ca. 8,000 bp) for the same set of 50 campanulid taxa. Finally, we assembled the most comprehensive sample of cam- panulid diversity to date, including ca. 17,000 bp of cpDNA for 122 campanulid taxa and five outgroups. Simply filling in missing data in the 50-taxon data set (rendering it 94% complete) resulted in a topology that was similar to earlier studies, but with little additional resolution or confidence. -
2017REN1B041.Pdf
ANNÉE 2017 THÈSE / UNIVERSITÉ DE RENNES 1 sous le sceau de l’Université Bretagne Loire pour le grade de DOCTEUR DE L’UNIVERSITÉ DE RENNES 1 Mention : Biologie et Sciences de la Santé Ecole doctorale Ecologie, Géosciences, Agronomie ALimentation Alice GADEA Préparée dans l’unité de recherche UMR CNRS 6553 EcoBio - PHENOME Ecosystèmes, Biodiversité, Evolution - UFR des Sciences de la Vie et de l’Environnement et dans l’unité de recherche UMR CNRS 6226 ISCR - CORINT Institut des Sciences Chimiques de Rennes - Faculté de Pharmacie Thèse soutenue à Rennes Lichens et le 11 décembre 2017 devant le jury composé de : Gastéropode du Catherine LEBLANC Directrice de Recherche au CNRS, Station Biologique Subantarctique : de Roscoff / rapporteur Olivier GROVEL Professeur à l’Université de Nantes / rapporteur Ecologie chimique et Martin GRUBE Professeur à l’Université de Graz, Autriche / examinateur relations trophiques Luc MADEC Professeur à l’Université de Rennes 1 / examinateur Anne-Cécile LE LAMER Maître de Conférences à l’Université de Toulouse 3 / Examinatrice Françoise LOHEZIC-LE DEVEHAT Maître de Conférences à l’Université de Rennes 1 / Examinatrice Joël BOUSTIE Professeur à l’Université de Rennes 1 / Co-directeur de thèse Maryvonne CHARRIER Maître de Conférences à l’Université de Rennes 1 / Directrice de thèse Lexique de lichnologie Apothécie : organe produit par le mycobiote permettant la reproduction sexuée du lichen par la production de spores. Céphalodie : Petit organe bien délimité, soit à l’intérieur du thalle, soit émergent en petite excroissance à la surface de celui-ci, contenant les cyanobactéries lorsqu’elles sont présentes en tant que photosymbiote secondaire. Cordon axial : Ensemble d’hyphes très serrés parallèles à l’axe, formant un cordon très résistant dans la partie centrale du thalle (essentiellement chez les usnées). -
Overcoming Deterrent Metabolites by Gaining Essential Nutrients a Lichen
Overcoming deterrent metabolites by gaining essential nutrients A lichen/snail case study Alice Gadea, Maryvonne Charrier, Mathieu Fanuel, Philippe Clerc, Corentin Daugan, Aurélie Sauvager, Hélène Rogniaux, Joël Boustie, Anne-Cécile Le Lamer, Françoise Lohezic-Le Devehat To cite this version: Alice Gadea, Maryvonne Charrier, Mathieu Fanuel, Philippe Clerc, Corentin Daugan, et al.. Overcom- ing deterrent metabolites by gaining essential nutrients A lichen/snail case study. Phytochemistry, Elsevier, 2019, 164, pp.86-93. 10.1016/j.phytochem.2019.04.019. hal-02150227 HAL Id: hal-02150227 https://hal-univ-rennes1.archives-ouvertes.fr/hal-02150227 Submitted on 18 Feb 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Title page Overcoming deterrent metabolites by gaining essential nutrients: a lichen/snail case study 1 Gadea Alice a,b, Charrier Maryvonne b, Fanuel Mathieu c, Clerc Philippe d, Daugan Corentin a, Sauvager 2 Aurélie a, Rogniaux Hélène c, Boustie Joël a, Le Lamer Anne-Cécile e¥ and Lohézic – Le Devehat Françoise 3 a*¥ 4 5 a Univ Rennes, -
Southland Threatened Plant List
Southland Threatened Common name or Plant list (2009) 2009 status plant form Habitat Abrotanella muscosa Naturally Uncommon a daisy fellfield/herbfield Abrotanella rostrata Naturally Uncommon a daisy fellfield/herbfield Abrotanella rosulata Naturally Uncommon a daisy fellfield/herbfield Abrotanella spathulata Naturally Uncommon a daisy fellfield/herbfield Acaena microphylla var. pauciglochidiata Naturally Uncommon a daisy turf and cushion Acaena minor var. antarctica Naturally Uncommon a daisy coastal tussockland Acaena minor var. minor Naturally Uncommon a daisy coastal tussockland Acaena tesca Naturally Uncommon a daisy fellfield/herbfield Aciphylla cartilaginea Naturally Uncommon a speargrass fellfield/herbfield Aciphylla congesta Naturally Uncommon a speargrass fellfield/herbfield Aciphylla crosby- smithiana Naturally Uncommon a speargrass fellfield/herbfield Aciphylla lecomtei Naturally Uncommon a speargrass cliff/tall tussockland Aciphylla leighii Naturally Uncommon a speargrass cliff Aciphylla multisecta Naturally Uncommon a speargrass fellfield/herbfield Aciphylla spedenii Naturally Uncommon a speargrass fellfield/herbfield Aciphylla stannensis Naturally Uncommon a speargrass fellfield/herbfield Aciphylla subflabellifolia Declining a speargrass short tussock Aciphylla takahea Naturally Uncommon a speargrass tall tussockland Aciphylla traillii Naturally Uncommon a speargrass fellfield/herbfield turf and cushion/fellfiield- Agrostis subulata Naturally Uncommon a grass herbfield Alepis flavida Declining yellow mistletoe closed forest