RESEARCH ARTICLE Comparative chloroplast genomes of eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny Xiang-Qin Yu1,2, Bryan T. Drew3, Jun-Bo Yang1, Lian-Ming Gao2*, De-Zhu Li1* 1 Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China, 2 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China, 3 Department of a1111111111 Biology, University of Nebraska, Kearney, NE, United States of America a1111111111 a1111111111 *
[email protected] (DZL);
[email protected] (LMG) a1111111111 a1111111111 Abstract Schima is an ecologically and economically important woody genus in tea family (Thea- ceae). Unresolved species delimitations and phylogenetic relationships within Schima limit OPEN ACCESS our understanding of the genus and hinder utilization of the genus for economic purposes. Citation: Yu X-Q, Drew BT, Yang J-B, Gao L-M, Li In the present study, we conducted comparative analysis among the complete chloroplast D-Z (2017) Comparative chloroplast genomes of (cp) genomes of 11 Schima species. Our results indicate that Schima cp genomes possess eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny. PLoS ONE 12(6): a typical quadripartite structure, with conserved genomic structure and gene order. The size e0178026. https://doi.org/10.1371/journal. of the Schima cp genome is about 157 kilo base pairs (kb). They consistently encode 114 pone.0178026 unique genes, including 80 protein-coding genes, 30 tRNAs, and 4 rRNAs, with 17 dupli- Editor: Genlou Sun, Saint Mary's University, cated in the inverted repeat (IR).