Enantioselective Alcohol Synthesis Using Ketoreductases, Lipases Or an Aldolase
Total Page:16
File Type:pdf, Size:1020Kb
Enantioselective Alcohol Synthesis using Ketoreductases, Lipases or an Aldolase Menno J. Sorgedrager Cover: Representing “Diversity in Parameter Space” Part of a screenprint by J.C. van de Griendt; in honour of my father Enantioselective Alcohol Synthesis using Ketoreductases, Lipases or an Aldolase Proefschrift ter verkrijging van de graad van doctor aan de Technische Universiteit Delft, op gezag van Rector Magnificus, prof. dr. ir. J.T. Fokkema, voorzitter van het College van Promoties, in het openbaar te verdedigen op 29 mei 2006 om 12.30 uur door Menno Jort SORGEDRAGER ingenieur in de bioprocestechnologie geboren te Groningen Dit proefschrift is goedgekeurd door de promotor: Prof. dr. R.A. Sheldon Toegevoegd promotor: Dr. ir. F. van Rantwijk Samenstelling promotiecommissie: Rector Magnificus Voorzitter Prof. dr. R.A. Sheldon Technische Universiteit Delft, promotor Dr. ir. F. van Rantwijk Technische Universiteit Delft, toegevoegd promotor Prof. dr. W.R. Hagen Technische Universiteit Delft Prof. dr. J.A.M. de Bont Technische Universiteit Delft Prof. dr. A. Liese Technische Universiteit Hamburg Prof. dr. ir. A.P.G. Kieboom Universiteit van Leiden Dr. G. Huisman Codexis Inc. (USA, CA) The research described in this thesis was financially supported and performed in cooperation with Codexis inc. (Redwood City, USA). ISBN: 90-9020702-3 Copyright 2005 by M.J. Sorgedrager All rights reserved. No part of the material protected by this copyright notice may be reproduced or utilized in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage and retrieval system, without written approval from the author. Contents INTRODUCTION Chapter 1 Introduction 1 PART I: LIPASE CATALYSED RESOLUTION OF ALDOL ADDUCTS Chapter 2 Lipase catalysed Resolution of Nitro aldol Adducts 21 Chapter 3 Optimising the Deracemisation of Nitro aldol Adducts 33 PART II ENANTIOSELECTIVE CARBONYL REDUCTION Chapter 4 Asymmetric Reduction with Candida Magnoliae Ketoreductase S1 47 Chapter 5 Asymmetric Carbonyl-Reductions with Microbial Ketoreductases 63 PART III ENANTIOSELECTIVE ALDOL REACTION: DERA Chapter 6 Production and Optimisation of 2-deoxyribose-5-phosphate Aldolase 79 Chapter 7 DERA as Catalyst for Statin Precursors 97 Chapter 8 Cross-linked Enzyme Aggregates of DERA 113 Summary 125 Samenvatting 127 Dankwoord 129 Curriculum vitae 132 1 Introduction Introduction Introduction The carbonyl group is probably the most important functional group in organic chemistry. Besides aldehydes and ketones, many functional groups contain the C=O bond, to which they own much of their behaviour in chemistry, such as carboxylic acids, acidhalides, acid anhydrides, esters and amides. When the molecule is bearing at least one α-hydrogen, which is acidic due to the electron-withdrawing effect of the carbonyl group and therefore can be abstracted by a strong base, these compounds are able to react via the resulting enolate ion. This forms the basis for a variety of synthetically usefull C-C bond forming reactions. Michael addition, aldol and Claissen reactions are examples of this reaction pathway. One of the most important of these reactions is probably the aldol reaction. Besides taking a central role in synthetic organic chemistry, this reaction is vital for all living organisms in nature. Aldol-type reactions are the key step in the metabolic pathways of micro-organisms, where it takes part in the breakdown of carbohydrates. Besides its role in anabolism, the aldol reaction is often applied in catabolism as well. The aldol reaction is initiated by the formation of the enolate by a base, followed by nucleophilic attack hereof on another carbonyl carbon (Figure 1.1). Depending on the reaction conditions it is possible to isolate the β-Hydroxy carbonyl compound or the unsaturated product that is formed by subsequent dehydration. In the latter case it is referred to as aldol condensation. β-Hydroxy carbonyl compounds are versatile and interesting intermediates. They can easily be synthesised directly via an aldol reaction of the corresponding aldehydes. The β-ketoesters, later described in this Chapter in connection with their reduction into β-Hydroxy esters, are easily accessible via the aldol reaction analogue for esters known as the Claisen condensation. Base H H O OH dehyration O - - O H2C O H2C O O Figure 1.1 The aldol reaction and subsequent condensation of acetaldehyde 2 Chapter 1 The demand for optically pure intermediates has grown rapidly in recent years. Therefore it is of growing importance to control chirality during a reaction. Although there are various chemical methods available1 biocatalysts are more and more applied to achieve this goal.1,2 Enzymes from the classes hydrolases, oxidoreductases and lyases are synthetically interesting for this purpose. Lipases, able to hydrolyze esterbonds; Ketoreductases, able to reduce carbonyl groups and aldolases that perform aldol reactions are well suited to synthesize enantiopure secondary alcohols. Biocatalysis: Kinetic resolution vs asymmetric synthesis Two strategies are possible to obtain homochiral compounds. One is a kinetic resolution of a racemic mixture, in which the enzyme catalyses the reaction of the two enantiomers of the substrate with different rates. The lipase mediated esterification of racemic secondary alcohols (Chapters 2 and 3) is a well known example of applying a kinetic resolution strategy. The other is an asymmetric synthesis starting from a prochiral substrate. In an asymmetric synthesis a new chiral centre is introduced into the substrate molecule. Examples of asymmetric syntheses, which are reported in this thesis, are the asymmetric reduction mediated by ketoreductases (Chapters 4 and 5) and the DERA catalysed aldol reaction (Chapters 6-8). The efficiency of a resolution process is dependent on the difference in rate in which the two enantiomers are converted. This is indicated with the enantiomeric ratio (E), which is the ratio of the two pseudo-first order kinetic rate constants (eq. 1.1). The enantiomeric excess of a compound (ee) is the excess amount of one enantiomer compared to the total amount of both enantiomers (eq. 1.2). The enantiomeric ratio: R RR k ()VKmax / m E ≡= (eq. 1.1) S SS k ()VKmax / m 3 Introduction The enantiomeric excess: ()cc− ee = RS (eq. 1.2) ()ccRS+ cx: Concentration enantiomer x The E value can be determined from experimental data via the conversion and either the ee of the substrate or the ee of the product.3 ln{() 1−−ξ ( 1 ees )} Via substrate: E = (eq. 1.3) ln{}()() 1−+ξ 1 ees ln{ 1−+ξ ( 1 eep )} Via product: E = (eq. 1.4) ln{} 1−−ξ () 1 eep E: Enantiomeric ratio ees: Enantiomeric excess of the substrate eep: Enantiomeric excess of the product ξ: Conversion An alternative method for calculating the enantiomeric ratio (E) directly from the enantiomeric excess of the substrate (ees) and the product (eep) is given by equation 1.5. The conversion of an irreversible reaction without substrate inhibition (up to 40% conversion) can then be calculated directly from the optical purities of the substrate (ees) and the product (eep) according to equation 1.6.3 ()11−+ee() ee Direct from ee’s: E = lnss ln (eq. 1.5) 11++ee ee ee ee ()sp() sp ee Conversion: ξ = s (eq. 1.6) ()ees + eep In a classical kinetic resolution two enantiomers of a racemic mixture are transformed to product with different reaction rates. In the ideal situation only one of the enantiomers reacts to product and thus yields a maximum conversion of 50 % of the total amount of substrate. To overcome this limitation many efforts have been made to combine the racemisation of the substrate in the resolution proces4 in a so-called dynamic kinetic resolution 4 Chapter 1 (DKR, Figure 1.2) The biggest challenge here is to find conditions that are compatible with both processes. Fast Fast (S)-Substrate (S)-Product (S)-Substrate (S)-Product in Situ Racemisation Slow Slow (R)-Substrate (R)-Product (R)-Substrate (R)-Product Classical kinetic resolution Dynamic kinetic resolution Figure 1.2 General schemes for a classical kinetic resolution and a dynamic kinetic resolution Lipase resolution Lipases are enzymes of the hydrolase group. In nature they catalyse the hydrolysis of triglycerides and other long chain fats and oils. Besides their normal substrates most lipases accept a very broad range of acyl donors and acyl acceptors5. Since lipases generally exhibit mostly a high stability, accept a wide variety of substrates and have a wide occurrence in nature, they have become readily available and industrially applicable enzymes. They have current industrial applications as detergent enzymes, in food and paper technology and in the pharmaceutical and speciality chemicals industry5. In their natural reaction lipases operate at an oil/water interface and convert sparingly water soluble triglycerides. Therefore, it is perhaps not surprising that they exhibit high stability and activity in organic media. Whereas in aqueous media ester hydrolysis is the main reaction of a lipase, in non- aqueous media the reaction with other nucleophiles such as alcohols, esters, hydrogenperoxides, ammonia and amines becomes possible. 5 Introduction Asp O O H His N N H O Asp - Asp O O O O O Ser O O NH HN H H His O N O His N R N N O O Asp H O H O O Ser O O Ser O NH HN H HN His NH O N O O O N R Free ROAc H O Acyl enzyme enzyme intermediate - (with acyldonor) O O (with alcohol) Ser NH HN O O Tetrahedral intermediates Figure 1.3 Catalytic machanism of a lipase catalyzed esterification of a chiral alcohol with vinyl acetate as model acyl donor. The active site of a lipase consists of a catalytic triad of serine, histidine and aspartate. In most lipases a flexible lid of one or more short α helices covers this active site. In the open form the substrate (acyl donor) can enter the active site and bind with the serine to form the tetrahedral intermediate.