Disease of Aquatic Organisms 70:261
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Guide for Common Viral Diseases of Animals in Louisiana
Sampling and Testing Guide for Common Viral Diseases of Animals in Louisiana Please click on the species of interest: Cattle Deer and Small Ruminants The Louisiana Animal Swine Disease Diagnostic Horses Laboratory Dogs A service unit of the LSU School of Veterinary Medicine Adapted from Murphy, F.A., et al, Veterinary Virology, 3rd ed. Cats Academic Press, 1999. Compiled by Rob Poston Multi-species: Rabiesvirus DCN LADDL Guide for Common Viral Diseases v. B2 1 Cattle Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 2 Deer and Small Ruminants Please click on the principle system involvement Generalized viral disease Respiratory viral disease Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 3 Swine Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 4 Horses Please click on the principle system involvement Generalized viral diseases Neurological viral diseases Respiratory viral diseases Enteric viral diseases Abortifacient/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 5 Dogs Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. -
Comparative Analysis, Distribution, and Characterization of Microsatellites in Orf Virus Genome
www.nature.com/scientificreports OPEN Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome Basanta Pravas Sahu1, Prativa Majee 1, Ravi Raj Singh1, Anjan Sahoo2 & Debasis Nayak 1* Genome-wide in-silico identifcation of microsatellites or simple sequence repeats (SSRs) in the Orf virus (ORFV), the causative agent of contagious ecthyma has been carried out to investigate the type, distribution and its potential role in the genome evolution. We have investigated eleven ORFV strains, which resulted in the presence of 1,036–1,181 microsatellites per strain. The further screening revealed the presence of 83–107 compound SSRs (cSSRs) per genome. Our analysis indicates the dinucleotide (76.9%) repeats to be the most abundant, followed by trinucleotide (17.7%), mononucleotide (4.9%), tetranucleotide (0.4%) and hexanucleotide (0.2%) repeats. The Relative Abundance (RA) and Relative Density (RD) of these SSRs varied between 7.6–8.4 and 53.0–59.5 bp/ kb, respectively. While in the case of cSSRs, the RA and RD ranged from 0.6–0.8 and 12.1–17.0 bp/kb, respectively. Regression analysis of all parameters like the incident of SSRs, RA, and RD signifcantly correlated with the GC content. But in a case of genome size, except incident SSRs, all other parameters were non-signifcantly correlated. Nearly all cSSRs were composed of two microsatellites, which showed no biasedness to a particular motif. Motif duplication pattern, such as, (C)-x-(C), (TG)- x-(TG), (AT)-x-(AT), (TC)- x-(TC) and self-complementary motifs, such as (GC)-x-(CG), (TC)-x-(AG), (GT)-x-(CA) and (TC)-x-(AG) were observed in the cSSRs. -
Morphological and Molecular Characterization of Ceratomyxa Batam N. Sp. (Myxozoa: Ceratomyxidae) Infecting the Gallbladder of Th
Parasitology Research (2019) 118:1647–1651 https://doi.org/10.1007/s00436-019-06217-w FISH PARASITOLOGY - SHORT COMMUNICATION Morphological and molecular characterization of Ceratomyxa batam n. sp. (Myxozoa: Ceratomyxidae) infecting the gallbladder of the cultured Trachinotus ovatus (Perciformes: Carangidae) in Batam Island, Indonesia Ying Qiao1 & Yanxiang Shao1 & Theerakamol Pengsakul 2 & Chao Chen1 & Shuli Zheng3 & Weijian Wu3 & Tonny Budhi Hardjo3 Received: 5 September 2017 /Accepted: 17 January 2019 /Published online: 23 March 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract A new coelozoic myxozoan species, Ceratomyxa batam n. sp., was identified in cultured carangid fish, Trachinotus ovatus (Perciformes: Carangidae), in waters off Batam Island of Indonesia. The bi- and trivalved spores were observed in the gallbladder of T. ovatus. Mature bivalved spores of C. batam n. sp. were transversely elongated and narrowly crescent in shape, 3.8 ± 0.36 (2.7–4.6) μm long and 19.2 ± 1.75 (16.2–22.0) μm thick. Two sub-spherical polar capsules were 2.3 ± 0.18 (2.0–2.8) μmlong and 2.6 ± 0.16 (2.3–2.9) μm wide. Prevalence was 72.2% in 72 examined T. ovatus according to evaluations dating from November 2016. The maximum likelihood phylogenetic tree based on small subunit rDNA sequence showed similarity with Ceratomyxa robertsthomsoni and Ceratomyxa thalassomae found in Australia. This is the first report of Ceratomyxa species identified in a seawater fish at Batam Island, Indonesia. Keywords Ceratomyxa Batam n. sp. Characterization . Parasite . Gallbladder . Trachinotus ovatus Introduction Cryptocaryonidae) (Dan et al. 2006), Paradeontacylix mcintosh (Trematoda: Sanguinicolidae), Benedenia diesing The Carangid fish ovate pompano (Trachinotus ovatus)isthe (Monogenea: Capsalidae), and Trichodibna ehrenberg most successfully cultured marine fish in the world. -
Assessing Myxozoan Presence and Diversity with Environmental DNA
*Manuscript Click here to view linked References Assessing myxozoan presence and diversity with environmental DNA Hanna Hartikainen1,2,3*, David Bass3,4, Andrew G. Briscoe3, Hazel Knipe3,5, Andy J. Green6, Beth 5 Okamura3 1 Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600 Dübendorf, Switzerland 2 Institute for Integrative Biology, ETH Zurich, 8092 Zurich, Switzerland 3 Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, 10 UK 4 Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK 5 Cardiff School of Biosciences, Sir Martin Evans Building, Museum Place, Cardiff, CF10 3AX, UK 15 6Department of Wetland Ecology, Estación Biológica de Doñana, EBD-CSIC, Américo Vespucio s/n, 41092 Sevilla, Spain *Corresponding author: Hanna Hartikainen; Eawag, Ueberlandstrasse 133, Duebendorf, Switzerland; phone: +41 58 765 5446; [email protected] 20 Note: Supplementary data associated with this article Abstract Amplicon sequencing on a High Throughput Sequencing (HTS) platform (custom barcoding) was used to detect and characterise myxosporean communities in environmental DNA samples from 25 marine and freshwater environments and in faeces of animals that may serve as hosts or whose prey may host myxosporean infections. A diversity of myxozoans in filtered water samples and in faeces of piscivores (otters and great cormorants) was detected, demonstrating the suitability of lineage specific amplicons for characterising otherwise difficult to sample parasite communities. The importance of using the approach was highlighted by the lack of myxosporean detection using 30 commonly employed, broadly-targeted eukaryote primers. These results suggest that, despite being frequently present in eDNA samples, myxozoans have been generally overlooked in ‘eukaryote- wide’ surveys. -
Modulation of NF-Κb Signalling by Microbial Pathogens
REVIEWS Modulation of NF‑κB signalling by microbial pathogens Masmudur M. Rahman and Grant McFadden Abstract | The nuclear factor-κB (NF‑κB) family of transcription factors plays a central part in the host response to infection by microbial pathogens, by orchestrating the innate and acquired host immune responses. The NF‑κB proteins are activated by diverse signalling pathways that originate from many different cellular receptors and sensors. Many successful pathogens have acquired sophisticated mechanisms to regulate the NF‑κB signalling pathways by deploying subversive proteins or hijacking the host signalling molecules. Here, we describe the mechanisms by which viruses and bacteria micromanage the host NF‑κB signalling circuitry to favour the continued survival of the pathogen. The nuclear factor-κB (NF-κB) family of transcription Signalling targets upstream of NF‑κB factors regulates the expression of hundreds of genes that NF-κB proteins are tightly regulated in both the cyto- are associated with diverse cellular processes, such as pro- plasm and the nucleus6. Under normal physiological liferation, differentiation and death, as well as innate and conditions, NF‑κB complexes remain inactive in the adaptive immune responses. The mammalian NF‑κB cytoplasm through a direct interaction with proteins proteins are members of the Rel domain-containing pro- of the inhibitor of NF-κB (IκB) family, including IκBα, tein family: RELA (also known as p65), RELB, c‑REL, IκBβ and IκBε (also known as NF-κBIα, NF-κBIβ and the NF-κB p105 subunit (also known as NF‑κB1; which NF-κBIε, respectively); IκB proteins mask the nuclear is cleaved into the p50 subunit) and the NF-κB p100 localization domains in the NF‑κB complex, thus subunit (also known as NF‑κB2; which is cleaved into retaining the transcription complex in the cytoplasm. -
Specimen Type, Collection Methods, and Diagnostic Assays Available For
Specimen type, collection methods, and diagnostic assays available for the detection of poxviruses from human specimens by the Poxvirus and Rabies Branch, Centers for Disease Control and Prevention1. Specimen Orthopoxvirus Parapoxvirus Yatapoxvirus Molluscipoxvirus Specimen type collection method PCR6 Culture EM8 IHC9,10 Serology11 PCR12 EM8 IHC9,10 PCR13 EM8 PCR EM8 Lesion material Fresh or frozen Swab 5 Lesion material [dry or in media ] [vesicle / pustule Formalin fixed skin, scab / crust, etc.] Paraffin block Fixed slide(s) Container Lesion fluid Swab [vesicle / pustule [dry or in media5] fluid, etc.] Touch prep slide Blood EDTA2 EDTA tube 7 Spun or aliquoted Serum before shipment Spun or aliquoted Plasma before shipment CSF3,4 Sterile 1. The detection of poxviruses by electron microscopy (EM) and immunohistochemical staining (IHC) is performed by the Infectious Disease Pathology Branch of the CDC. 2. EDTA — Ethylenediaminetetraacetic acid. 3. CSF — Cerebrospinal fluid. 4. In order to accurately interpret test results generated from CSF specimens, paired serum must also be submitted. 5. If media is used to store and transport specimens a minimal amount should be used to ensure as little dilution of DNA as possible. 6. Orthopoxvirus generic real-time polymerase chain reaction (PCR) assays will amplify DNA from numerous species of virus within the Orthopoxvirus genus. Species-specific real-time PCR assays are available for selective detection of DNA from variola virus, vaccinia virus, monkeypox virus, and cowpox virus. 7. Blood is not ideal for the detection of orthopoxviruses by PCR as the period of viremia has often passed before sampling occurs. 8. EM can reveal the presence of a poxvirus in clinical specimens or from virus culture, but this technique cannot differentiate between virus species within the same genus. -
Cefas PANDA Report
Project no. SSPE-CT-2003-502329 PANDA Permanent network to strengthen expertise on infectious diseases of aquaculture species and scientific advice to EU policy Coordination Action, Scientific support to policies WP4: Report on the current best methods for rapid and accurate detection of the main disease hazards in aquaculture, requirements for improvement, their eventual standardisation and validation, and how to achieve harmonised implementation throughout Europe of the best diagnostic methods Olga Haenen*, Inger Dalsgaard, Jean-Robert Bonami, Jean-Pierre Joly, Niels Olesen, Britt Bang Jensen, Ellen Ariel, Laurence Miossec and Isabelle Arzul Work package leader & corresponding author: Dr Olga Haenen, CIDC-Lelystad, NL ([email protected]) PANDA co-ordinator: Dr Barry Hill, CEFAS, UK; www.europanda.net © PANDA, 2007 Cover image: Koi with Koi Herpes Virus Disease: enophthalmia and gill necrosis (M.Engelsma acknowl.) Contents Executive summary 5 Section 1 Introduction 7 1.1 Description of work 7 1.2 Deliverables 8 1.3 Milestones and expected results 9 1.4 Structure of the report and how to use it 9 1.5 General remarks and links with other WPs of PANDA 9 Section 2 Materials and methods 10 2.1 Task force 10 2.2 Network 10 2.3 Workshops and dissemination 10 2.4 Analysis of data 10 2.5 Why harmonization throughout Europe background and aim 11 2.6. CRL functions 11 Section 3 Results 12 3.1 Task force 12 3.2 Network 12 3.3 Workshops and dissemination 12 3.4 Analysis of data 14 Diseases/pathogens of fish 14 3.4.1 Epizootic haematopoietic necrosis -
Treatment of Metastatic Disease Through Natural Killer Cell Modulation by Infected Cell Vaccines
viruses Review Treatment of Metastatic Disease through Natural Killer Cell Modulation by Infected Cell Vaccines Seyedeh Raheleh Niavarani 1, Christine Lawson 1 and Lee-Hwa Tai 1,2,* 1 Department of Anatomy and Cell Biology, Université de Sherbrooke, Sherbrooke QC J1E 4K8, Canada; [email protected] (S.R.N.); [email protected] (C.L.) 2 Centre de Recherche du Centre Hospitalier de l’Université de Sherbrooke, Sherbrooke QC J1E 4K8, Canada * Correspondence: [email protected]; Tel.: +1-819-821-8000 (ext. 71199) Received: 26 March 2019; Accepted: 10 May 2019; Published: 11 May 2019 Abstract: Oncolytic viruses (OVs) are a form of immunotherapy that release tumor antigens in the context of highly immunogenic viral signals following tumor-targeted infection and destruction. Emerging preclinical and clinical evidence suggests that this in situ vaccine effect is critical for successful viro-immunotherapy. In this review, we discuss the application of OV as an infected cell vaccine (ICV) as one method of enhancing the potency and breadth of anti-tumoral immunity. We focus on understanding and manipulating the critical role of natural killer (NK) cells and their interactions with other immune cells to promote a clinical outcome. With a synergistic tumor killing and immune activating mechanism, ICVs represent a valuable new addition to the cancer fighting toolbox with the potential to treat malignant disease. Keywords: immunotherapy; oncolytic virus; autologous cancer vaccines; infected cell vaccines; natural killer cells; immunomonitoring 1. Introduction While the field of oncology has seen great advances in treating primary solid cancers, malignant cancers that have spread to multiple sites of the body have rarely been cured. -
DNA and Peptide Aptamer Selection for Diagnostic Applications
DNA and Peptide Aptamer Selection for Diagnostic Applications vorgelegt von Diplom-Ingenieurin Janine Michel aus Berlin Von der Fakultät III – Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Ingenieurwissenschaften -Dr.-Ing.- genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. Leif-A. Garbe Berichter: Prof. Dr. Jens Kurreck Berichter: PD Dr. Andreas Nitsche Tag der wissenschaftlichen Aussprache: 27.09.2013 Berlin 2013 D83 To Olaf and my loving family, especially to grandpa Bernd. I miss you! I Acknowledgments This work would have been impossible to complete without the help of many persons, including colleagues, family, and friends. Since there are so many of them I cannot acknowledge every single contribution by name, but I would like to thank everyone who helped me through this demanding and challenging but interesting time, regardless of the type of support. Above all, I would like to thank Andreas Nitsche for giving me the opportunity to do my PhD project and for the continuous support. Many thanks go to my dear colleagues Lilija Miller and Daniel Stern who helped me especially in the beginning of this project. Thank you for introducing me to the basics of phage display and aptamers and for the fruitful and valuable scientific discussions and for frequent encouragement. I am grateful to Lilija Miller who helped me with phage display selections and subsequent peptide characterizations. Further, I would like to thank all members of the ZBS1 group for the friendly atmosphere and the company during lunch. A considerable contribution was made by students I supervised during my PhD project. Carolin Ulbricht, Daniel John and Alina Sobiech contributed to the “DNA aptamer selection and characterization project” during their bachelor’s thesis, internships, and master’s thesis, respectively. -
Risk Groups: Viruses (C) 1988, American Biological Safety Association
Rev.: 1.0 Risk Groups: Viruses (c) 1988, American Biological Safety Association BL RG RG RG RG RG LCDC-96 Belgium-97 ID Name Viral group Comments BMBL-93 CDC NIH rDNA-97 EU-96 Australia-95 HP AP (Canada) Annex VIII Flaviviridae/ Flavivirus (Grp 2 Absettarov, TBE 4 4 4 implied 3 3 4 + B Arbovirus) Acute haemorrhagic taxonomy 2, Enterovirus 3 conjunctivitis virus Picornaviridae 2 + different 70 (AHC) Adenovirus 4 Adenoviridae 2 2 (incl animal) 2 2 + (human,all types) 5 Aino X-Arboviruses 6 Akabane X-Arboviruses 7 Alastrim Poxviridae Restricted 4 4, Foot-and- 8 Aphthovirus Picornaviridae 2 mouth disease + viruses 9 Araguari X-Arboviruses (feces of children 10 Astroviridae Astroviridae 2 2 + + and lambs) Avian leukosis virus 11 Viral vector/Animal retrovirus 1 3 (wild strain) + (ALV) 3, (Rous 12 Avian sarcoma virus Viral vector/Animal retrovirus 1 sarcoma virus, + RSV wild strain) 13 Baculovirus Viral vector/Animal virus 1 + Togaviridae/ Alphavirus (Grp 14 Barmah Forest 2 A Arbovirus) 15 Batama X-Arboviruses 16 Batken X-Arboviruses Togaviridae/ Alphavirus (Grp 17 Bebaru virus 2 2 2 2 + A Arbovirus) 18 Bhanja X-Arboviruses 19 Bimbo X-Arboviruses Blood-borne hepatitis 20 viruses not yet Unclassified viruses 2 implied 2 implied 3 (**)D 3 + identified 21 Bluetongue X-Arboviruses 22 Bobaya X-Arboviruses 23 Bobia X-Arboviruses Bovine 24 immunodeficiency Viral vector/Animal retrovirus 3 (wild strain) + virus (BIV) 3, Bovine Bovine leukemia 25 Viral vector/Animal retrovirus 1 lymphosarcoma + virus (BLV) virus wild strain Bovine papilloma Papovavirus/ -
D070p001.Pdf
DISEASES OF AQUATIC ORGANISMS Vol. 70: 1–36, 2006 Published June 12 Dis Aquat Org OPENPEN ACCESSCCESS FEATURE ARTICLE: REVIEW Guide to the identification of fish protozoan and metazoan parasites in stained tissue sections D. W. Bruno1,*, B. Nowak2, D. G. Elliott3 1FRS Marine Laboratory, PO Box 101, 375 Victoria Road, Aberdeen AB11 9DB, UK 2School of Aquaculture, Tasmanian Aquaculture and Fisheries Institute, CRC Aquafin, University of Tasmania, Locked Bag 1370, Launceston, Tasmania 7250, Australia 3Western Fisheries Research Center, US Geological Survey/Biological Resources Discipline, 6505 N.E. 65th Street, Seattle, Washington 98115, USA ABSTRACT: The identification of protozoan and metazoan parasites is traditionally carried out using a series of classical keys based upon the morphology of the whole organism. However, in stained tis- sue sections prepared for light microscopy, taxonomic features will be missing, thus making parasite identification difficult. This work highlights the characteristic features of representative parasites in tissue sections to aid identification. The parasite examples discussed are derived from species af- fecting finfish, and predominantly include parasites associated with disease or those commonly observed as incidental findings in disease diagnostic cases. Emphasis is on protozoan and small metazoan parasites (such as Myxosporidia) because these are the organisms most likely to be missed or mis-diagnosed during gross examination. Figures are presented in colour to assist biologists and veterinarians who are required to assess host/parasite interactions by light microscopy. KEY WORDS: Identification · Light microscopy · Metazoa · Protozoa · Staining · Tissue sections Resale or republication not permitted without written consent of the publisher INTRODUCTION identifying the type of epithelial cells that compose the intestine. -
A New Species Myxodavisia Jejuensis N. Sp. (Myxosporea: Sinuolineidae) Isolated from Cultured Olive Flounder Paralichthys Olivaceus in South Korea
Parasitology Research (2019) 118:3105–3112 https://doi.org/10.1007/s00436-019-06454-z FISH PARASITOLOGY - ORIGINAL PAPER A new species Myxodavisia jejuensis n. sp. (Myxosporea: Sinuolineidae) isolated from cultured olive flounder Paralichthys olivaceus in South Korea Sang Phil Shin1 & Chang Nam Jin1 & Han Chang Sohn1 & Hiroshi Yokoyama2 & Jehee Lee1 Received: 10 April 2019 /Accepted: 4 September 2019/Published online: 14 September 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract A new myxosporean parasite, Myxodavisia jejuensis n. sp. (Myxozoa; Bivalvulida) is described from the urinary bladder of olive flounder Paralichthys olivaceus cultured on Jeju Island, Korea. Two long lateral appendages with whip-like extensions were attached to mature spores of triangular to semi-circular shape. The spores were measured at 13.1 ± 1.1 μm in length, 17.2 ± 1.0 μmin thickness, and 13.1 ± 1.0 μm in width. Two spherical polar capsules, with a diameter of 5.0 ± 0.4 μm, were observed on opposite sides in the middle of the spore. The suture line was straight or slightly sinuous on the middle of spores. The 18S rDNA from M. jejuensis n. sp. was used in BLAST and molecular phylogenetic analysis. The results demonstrated that M. jejuensis n. sp. was closest to Sinuolinea capsularis and that the infection site tropism was correlated with the phylogeny of marine myxosporeans. In addition, we designed specific primers to detect the 18S rDNA gene of M. jejuensis n. sp.; the results showed specific amplification in M. jejuensis n. sp. among the myxosporeans isolated from the urinary bladder of the cultured olive flounder.