Conservation and Open Space County of Mariposa – Technical Background Report April 4, 2003
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Forage Fishes of the Southeastern Bering Sea Conference Proceedings
a OCS Study MMS 87-0017 Forage Fishes of the Southeastern Bering Sea Conference Proceedings 1-1 July 1987 Minerals Management Service Alaska OCS Region OCS Study MMS 87-0017 FORAGE FISHES OF THE SOUTHEASTERN BERING SEA Proceedings of a Conference 4-5 November 1986 Anchorage Hilton Hotel Anchorage, Alaska Prepared f br: U.S. Department of the Interior Minerals Management Service Alaska OCS Region 949 East 36th Avenue, Room 110 Anchorage, Alaska 99508-4302 Under Contract No. 14-12-0001-30297 Logistical Support and Report Preparation By: MBC Applied Environmental Sciences 947 Newhall Street Costa Mesa, California 92627 July 1987 CONTENTS Page ACKNOWLEDGMENTS .............................. iv INTRODUCTION PAPERS Dynamics of the Southeastern Bering Sea Oceanographic Environment - H. Joseph Niebauer .................................. The Bering Sea Ecosystem as a Predation Controlled System - Taivo Laevastu .... Marine Mammals and Forage Fishes in the Southeastern Bering Sea - Kathryn J. Frost and Lloyd Lowry. ............................. Trophic Interactions Between Forage Fish and Seabirds in the Southeastern Bering Sea - Gerald A. Sanger ............................ Demersal Fish Predators of Pelagic Forage Fishes in the Southeastern Bering Sea - M. James Allen ................................ Dynamics of Coastal Salmon in the Southeastern Bering Sea - Donald E. Rogers . Forage Fish Use of Inshore Habitats North of the Alaska Peninsula - Jonathan P. Houghton ................................. Forage Fishes in the Shallow Waters of the North- leut ti an Shelf - Peter Craig ... Population Dynamics of Pacific Herring (Clupea pallasii), Capelin (Mallotus villosus), and Other Coastal Pelagic Fishes in the Eastern Bering Sea - Vidar G. Wespestad The History of Pacific Herring (Clupea pallasii) Fisheries in Alaska - Fritz Funk . Environmental-Dependent Stock-Recruitment Models for Pacific Herring (Clupea pallasii) - Max Stocker. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
CHAPTER 2: Are Hypomesus Chishimaensis and H
MOLECULAR SYSTEMATICS AND BIOGEOGRAPHY OF THE HOLARCTIC SMELT FAMILY OSMERIDAE (PISCES). by KATRIINA LARISSA ILVES B.Sc., The University of British Columbia, 2000 B.A., The University of British Columbia, 2001 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES (Zoology) THE UNIVERSITY OF BRITISH COLUMBIA December 2007 © Katriina Larissa Ilves, 2007 ABSTRACT Biogeographers have long searched for common processes responsible for driving diversification in the Holarctic region. Although terrestrial flora and fauna have been well studied, much of the marine biogeographic work addresses patterns and processes occurring over a relatively recent timescale. A prerequisite to comparative biogeographic analysis requires well-resolved phylogenies of similarly distributed taxa that diverged over a similar timeframe. The overall aim of my Ph.D. thesis was to address fundamental questions in the systematics and biogeography of a family of Holarctic fish (Osmeridae) and place these results in a broad comparative biogeographic framework. With eight conflicting morphological hypotheses, the northern hemisphere smelts have long been the subjects of systematic disagreement. In addition to the uncertainty in the interrelationships within this family, the relationship of the Osmeridae to several other families remains unclear. Using DNA sequence data from three mitochondrial and three nuclear genes from multiple individuals per species, I reconstructed the phylogenetic relationships among the 6 genera and 15 osmerid species. Phylogenetic reconstruction and divergence dating yielded a well-resolved phylogeny of the osmerid genera and revealed several interesting evolutionary patterns within the family: (1) Hypomesus chishimaensis and H. nipponensis individuals are not reciprocally monophyletic, suggesting that they are conspecific and H. -
Effects of High Temperatures on Threatened Estuarine Fishes During Periods of Extreme Drought Ken M
© 2016. Published by The Company of Biologists Ltd | Journal of Experimental Biology (2016) 219, 1705-1716 doi:10.1242/jeb.134528 RESEARCH ARTICLE Effects of high temperatures on threatened estuarine fishes during periods of extreme drought Ken M. Jeffries1,2,‡, Richard E. Connon1, Brittany E. Davis2,3, Lisa M. Komoroske1,2,*, Monica T. Britton4, Ted Sommer5, Anne E. Todgham3 and Nann A. Fangue2 ABSTRACT migratory fish species as direct and indirect effects of changing Climate change and associated increases in water temperatures may environmental conditions are integrated across their different life impact physiological performance in ectotherms and exacerbate stages (Dudgeon et al., 2006; Reist et al., 2006; Crozier et al., 2008; endangered species declines. We used an integrative approach to Robinson et al., 2009). For example, increases in water temperature assess the impact of elevated water temperature on two fishes of during development may alter the timing of seaward migration in immediate conservation concern in a large estuary system, the anadromous species, causing individuals to miss optimal feeding threatened longfin smelt (Spirinchus thaleichthys) and endangered conditions in the marine environment (Taylor, 2008). While the delta smelt (Hypomesus transpacificus). Abundances have reached majority of knowledge on the effects of climate change on migratory record lows in California, USA, and these populations are at imminent fishes is from studying economically important anadromous risk of extirpation. California is currently impacted by a severe species, such as Pacific salmon and Atlantic salmon (e.g. Jonsson drought, resulting in high water temperatures, conditions that will and Jonsson, 2009; Martins et al., 2012), much less is known about become more common as a result of climate change. -
(Hypomesus Transpacificus) and Wakasagi Smelt
Molecular Ecology Resources (2011) 11, 784–785 doi: 10.1111/j.1755-0998.2011.03011.x TaqMan assays for the genetic identification of delta smelt (Hypomesus transpacificus) and wakasagi smelt (Hypomesus nipponensis) MELINDA R. BAERWALD,* GREGG SCHUMER,† BRIAN M. SCHREIER‡ and BERNIE MAY* *Department of Animal Science, University of California, Davis, One Shields Ave, Davis, CA 95616, USA, †Cramer Fish Sciences, 13300 New Airport Rd Suite 102, Auburn, CA 95602, USA, ‡Aquatic Ecology Section, California Department of Water Resources, 3500 Industrial Blvd, West Sacramento, CA 95691, USA Abstract We have developed species-specific TaqMan assays for two California fish species, the threatened delta smelt (Hypomesus transpacificus) and the introduced wakasagi smelt (Hypomesus nipponensis). The assays are capable of correctly identifying each species with 100% accuracy, with no cross-species amplification. We anticipate these assays will prove useful for future scientific studies requiring genetic species identification (e.g. predation of smelt) or monitoring (e.g. detection of delta smelt near water diversions). Keywords: mitochondrial DNA, Sacramento—San Joaquin Delta, smelt, species identification Received 28 December 2010; revision received 28 January 2011; accepted 23 February 2011 The recent precipitous decline of delta smelt (Hypomesus when the delta smelt population is at risk of entrain- transpacificus) in the San Francisco Estuary watershed has ment. caught the attention of scientists, environmentalists, pol- Sample collection details are shown in Table 1. Loca- icy-makers and the general public (Service 2007). A con- tions were selected to encompass the distributional ranges gener of the delta smelt that has been introduced into the of both species to assess potential intra- and inter-species Sacramento—San Joaquin Delta is the wakasagi smelt genetic variation. -
Yukon and Kuskokwim Whitefish Strategic Plan
U.S. Fish & Wildlife Service Whitefish Biology, Distribution, and Fisheries in the Yukon and Kuskokwim River Drainages in Alaska: a Synthesis of Available Information Alaska Fisheries Data Series Number 2012-4 Fairbanks Fish and Wildlife Field Office Fairbanks, Alaska May 2012 The Alaska Region Fisheries Program of the U.S. Fish and Wildlife Service conducts fisheries monitoring and population assessment studies throughout many areas of Alaska. Dedicated professional staff located in Anchorage, Fairbanks, and Kenai Fish and Wildlife Offices and the Anchorage Conservation Genetics Laboratory serve as the core of the Program’s fisheries management study efforts. Administrative and technical support is provided by staff in the Anchorage Regional Office. Our program works closely with the Alaska Department of Fish and Game and other partners to conserve and restore Alaska’s fish populations and aquatic habitats. Our fisheries studies occur throughout the 16 National Wildlife Refuges in Alaska as well as off- Refuges to address issues of interjurisdictional fisheries and aquatic habitat conservation. Additional information about the Fisheries Program and work conducted by our field offices can be obtained at: http://alaska.fws.gov/fisheries/index.htm The Alaska Region Fisheries Program reports its study findings through the Alaska Fisheries Data Series (AFDS) or in recognized peer-reviewed journals. The AFDS was established to provide timely dissemination of data to fishery managers and other technically oriented professionals, for inclusion in agency databases, and to archive detailed study designs and results for the benefit of future investigations. Publication in the AFDS does not preclude further reporting of study results through recognized peer-reviewed journals. -
Euryhalinity in an Evolutionary Context Eric T
University of Connecticut OpenCommons@UConn EEB Articles Department of Ecology and Evolutionary Biology 2013 Euryhalinity in an Evolutionary Context Eric T. Schultz University of Connecticut - Storrs, [email protected] Stephen D. McCormick USGS Conte Anadromous Fish Research Center, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/eeb_articles Part of the Comparative and Evolutionary Physiology Commons, Evolution Commons, and the Terrestrial and Aquatic Ecology Commons Recommended Citation Schultz, Eric T. and McCormick, Stephen D., "Euryhalinity in an Evolutionary Context" (2013). EEB Articles. 29. https://opencommons.uconn.edu/eeb_articles/29 RUNNING TITLE: Evolution and Euryhalinity Euryhalinity in an Evolutionary Context Eric T. Schultz Department of Ecology and Evolutionary Biology, University of Connecticut Stephen D. McCormick USGS, Conte Anadromous Fish Research Center, Turners Falls, MA Department of Biology, University of Massachusetts, Amherst Corresponding author (ETS) contact information: Department of Ecology and Evolutionary Biology University of Connecticut Storrs CT 06269-3043 USA [email protected] phone: 860 486-4692 Keywords: Cladogenesis, diversification, key innovation, landlocking, phylogeny, salinity tolerance Schultz and McCormick Evolution and Euryhalinity 1. Introduction 2. Diversity of halotolerance 2.1. Empirical issues in halotolerance analysis 2.2. Interspecific variability in halotolerance 3. Evolutionary transitions in euryhalinity 3.1. Euryhalinity and halohabitat transitions in early fishes 3.2. Euryhalinity among extant fishes 3.3. Evolutionary diversification upon transitions in halohabitat 3.4. Adaptation upon transitions in halohabitat 4. Convergence and euryhalinity 5. Conclusion and perspectives 2 Schultz and McCormick Evolution and Euryhalinity This chapter focuses on the evolutionary importance and taxonomic distribution of euryhalinity. Euryhalinity refers to broad halotolerance and broad halohabitat distribution. -
Recovery Plan for the Marbled Murrelet (Washington, Oregon, and California Populations) for a 60-Day Public Comment Period, Ending on October 10, 1995 (60 FR 40851)
RECOVERY PLAN FOR THE MARBLED MURRELET (Washington, and California Populations) Region 1 U.S. Fish and Wildlife Service Portland, Oregon RECOVERY PLAN for the THREATENED MARBLED MURRELET (Brachyramph us marmoratus) in WASHINGTON, OREGON, AND CALIFORNIA Published by Region 1 U.S. Fish and Wildlife Service Portland, Oregon Approved: Date: A5 the Nation ~ principal conservation agency, die Department of die Interior has responsiAility form ost of our nationally own edpuAlic lands and natural resources. Thi5 includes fostering die wisest use of our land and water resources, protecting our fi5h and wildlife, preserving die environmental and cultural values of our national parks and historical places, and providing for die enjoyment oflife through outdoor recreation. The Department assesses our energy and mineral resources and works to assure that their development is in the Lest interests ofall our people. The Department also has a major responsiLility for American Indian reservation communities and for people ~h0 live in island Territories under US. administration. DISCLAIMER Recovery plans delineate reasonable actions required to recover andlor protect listed species. Plans are published by the U.S. Fish and Wildlife Service (Service), sometimes prepared with the assistance ofrecovery teams, contractors, State agencies, and other affected and interested parties. Recovery teams serve as independent advisors to the Service. Objectives ofthe plan will be attained and any necessary funds made available, subject to budgetary and other constraints affecting the parties involved, as well as the need to address other priorities. Recovery plans do not obligate other parties to undertake specific tasks and may not represent the views nor the official positions or approval of any individuals or agencies involved in the plan formulation, other than the Service. -
Restoration of Salmonid Fishes in the Columbia River Ecosystem
RETURN TO THE RIVER : Prepublication Copy 10 September 1996 -- PREPUBLICATION COPY -- Return to the River: Restoration of Salmonid Fishes in the Columbia River Ecosystem Development of an Alternative Conceptual Foundation and Review and Synthesis of Science underlying the Fish and Wildlife Program of the Northwest Power Planning Council by The Independent Scientific Group Richard N. Williams, ISG Chair Lyle D. Calvin Charles C. Coutant Michael W. Erho, Jr. James A. Lichatowich William J. Liss Willis E. McConnaha Phillip R. Mundy Jack A. Stanford Richard R. Whitney Invited contributors: Daniel L. Bottom Christopher A. Frissell 10 September 1996 i RETURN TO THE RIVER : Prepublication Copy 10 September 1996 Independent Scientific Group (ISG) Lyle D. Calvin, Ph.D., statistics, Emeritus Faculty and Chair, Statistics Department, Oregon State University Charles C. Coutant, Ph.D., fisheries ecology, juvenile migration, Senior Resource Ecologist, Oak Ridge National Laboratory Michael W. Erho, Jr. , M.S., fisheries management, Independent Fisheries Consultant, formerly with Grant County Public Utility District. James A. Lichatowich, M.S., salmon ecology and life history, Independent Fisheries Consultant, formerly Assistant Chief of Fisheries, Oregon Department of Fish and Wildlife . William J. Liss, Ph.D., population and community ecology, Professor, Department of Fisheries, Oregon State University Phillip R. Mundy, Ph.D., population dynamics, harvest management, Independent Fisheries Consultant, former Manager of Fisheries Science Department for the Columbia River Inter-Tribal Fish Commission. Jack A. Stanford, Ph.D., large river and lake ecology, Bierman Professor and Director, Flathead Lake Biological Station, University of Montana Richard R. Whitney, Ph.D., fisheries management, juvenile bypass, Professor (retired), School of Fisheries, University of Washington Richard N. -
A “Stupid Little Fish”: Science, Law and the Politics of Environmental Decline in California by Caleb Richard Scoville A
A “Stupid Little Fish”: Science, Law and the Politics of Environmental Decline in California By Caleb Richard Scoville A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Sociology in the Graduate Division of the University of California, Berkeley Committee in Charge: Professor Marion Fourcade, Chair Professor Neil Fligstein Professor Calvin Morrill Professor Andrew Lakoff Summer 2020 Abstract A “Stupid Little Fish”: Science, Law and the Politics of Environmental Decline in California by Caleb Richard Scoville Doctor of Philosophy in Sociology University of California, Berkeley Professor Marion Fourcade, Chair This dissertation presents an in-depth study of one of the most controversial endangered species in United States history, and advances a theoretical framework for understanding the emergence of environmental problems in contemporary society. The delta smelt is a tiny fish found only in the Sacramento-San Joaquin Delta, the lynchpin of California’s water system. Legal protections of this once obscure species have made it a central player in California’s “water wars,” mobilizing political actors from the local level to the presidency. Drawing on archival sources, field observations, interviews, thousands of news articles, and social media data, I argue that far from being a mere conflict between interested actors, the contemporary controversy over the delta smelt emerged via sequential clashes among social domains which share jurisdiction over the nonhuman environment yet see “nature” in different ways. I call this process the “intervention cascade.” In the first chapter, “Becoming Endangered,” I show that it was only through the process of reengineering California’s river systems that the delta smelt came to be understood as a unique species, and one in danger of becoming extinct. -
Predicting Nutrient Content of Ray-Finned Fishes Using
ARTICLE DOI: 10.1038/s41467-018-06199-w OPEN Predicting nutrient content of ray-finned fishes using phylogenetic information Bapu Vaitla1, David Collar 2, Matthew R. Smith 3, Samuel S. Myers3,4, Benjamin L. Rice5 & Christopher D. Golden 1,3 Human food and nutrition security is dependent on marine ecosystems threatened by overfishing, climate change, and other processes. The consequences on human nutritional 1234567890():,; status are uncertain, in part because current methods of analyzing fish nutrient content are expensive. Here, we evaluate the possibility of predicting nutrient content of ray-finned fishes using existing phylogenetic and life history information. We focus on nutrients for which fish are important sources: protein, total fat, omega-3 and omega-6 fatty acids, iron, zinc, vitamin A, vitamin B12, and vitamin D. Our results show that life history traits are weak predictors of species nutrient content, but phylogenetic relatedness is associated with similar nutrient profiles. Further, we develop a method for predicting the nutrient content of 7500+ species based on phylogenetic relationships to species with known nutrient content. Our approach is a cost-effective means for estimating potential changes in human nutrient intake associated with altered access to ray-finned fishes. 1 Department of Nutrition, Harvard TH Chan School of Public Health, Harvard University, 665 Huntington Ave, Boston, MA 02115, USA. 2 Department of Organismal & Environmental Biology, Christopher Newport University, One Avenue of the Arts, Newport News, VA 23606, USA. 3 Department of Environmental Health, Harvard TH Chan School of Public Health, Harvard University, 677 Huntington Ave, Boston, MA 02115, USA. 4 Harvard University Center for the Environment, Harvard University, 26 Oxford St, 4th Floor, Cambridge, MA 02138, USA. -
Environmental Impact Assessment 12 July 2021
The Ocean Cleanup Final Environmental Impact Assessment 12 July 2021 Prepared for: Prepared by: The Ocean Cleanup CSA Ocean Sciences, Inc. Batavierenstraat 15, 4-7th floor 8502 SW Kansas Avenue 3014 JH Rotterdam Stuart, Florida 34997 The Netherlands United States THE OCEAN CLEANUP DRAFT ENVIRONMENTAL IMPACT ASSESSMENT DOCUMENT NO. CSA-THEOCEANCLEANUP-FL-21-81581-3648-01-REP-01-FIN-REV01 Internal review process Version Date Description Prepared by: Reviewed by: Approved by: J. Tiggelaar Initial draft for A. Lawson B. Balcom INT-01 04/20/2021 K. Olsen science review G. Dodillet R. Cady K. Olen J. Tiggelaar INT-02 04/24/2021 TE review K. Metzger K. Olsen K. Olen Client deliverable Version Date Description Project Manager Approval 01 04/27/2021 Draft Chapters 1-4 K. Olsen Combined 02 05/07/2021 K. Olsen deliverable Incorporation of The Ocean Cleanup and 03 05/17/2021 K. Olsen Neuston Expert Comments Incorporate legal FIN 07/09/2021 comments and add K. Olsen additional 2 cruises FIN REV01 07/12/2021 Revised Final K. Olsen The electronic PDF version of this document is the Controlled Master Copy at all times. A printed copy is considered to be uncontrolled and it is the holder’s responsibility to ensure that they have the current version. Controlled copies are available upon request from the CSA Document Production Department. Executive Summary BACKGROUND The Ocean Cleanup has developed a new Ocean System (S002) which is made by a Retention System (RS) comprising two wings of 391 m in length each and a Retention Zone (RZ), that will be towed by two vessels to collect buoyant plastic debris from the within the North Pacific Subtropical Gyre (NPSG) located roughly midway between California and Hawaii.