Mycosphaerella Spp Causing Leafspot Disease on Bananas Advanced Methods Supplement

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Mycosphaerella Spp Causing Leafspot Disease on Bananas Advanced Methods Supplement MYCOSPHAERELLA SPP CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT MYCOSPHAERELLA SPP. CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT Edited by J. Henderson (UQ/DPI&F Tree Pathology Centre ) K. Grice (Centre for Tropical Agriculture, DPI&F) Oc to ber 2008 1 MYCOSPHAERELLA SPP CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT MYCOSPHAERELLA SPP. CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT OCTOBER 2008 Contributors Juliane Henderson (UQ/DPI&F) Kathy Grice (DPI&F) Marie‐Françoise Zapater (CIRAD) Françoise Careel (CIRAD) The PCR primers and reaction conditions described in Protocol 4 of this document are pending publication and thus must be held in confidence until such time they appear in the public domain. Please also ensure these parameters do not appear in material including conference oral presentations, poster and funding body reports. No part of this document, including images, may be reproduced without permission of the authors. 2 MYCOSPHAERELLA SPP CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT INTRODUCTION .................................................................................................................... 5 1.0 IDENTIFICATION OF MYCOSPHAERELLA SPP. PATHOGENS ON BANANA (IN SITU) USING LIGHT MICROSCOPY..................................................................................... 8 1.1 AIM................................................................................................................................ 8 1.2 METHODOLOGY.......................................................................................................... 8 1.3 MATERIALS AND REAGENTS .................................................................................... 8 1.4 PROCEDURE ............................................................................................................... 9 Lesion Selection.................................................................................................................. 9 Glass Slide Preparation .................................................................................................... 10 Decolourisation ................................................................................................................. 10 Lesion Observation ........................................................................................................... 10 1.5 PATHOGEN IDENTIFICATION .................................................................................. 12 2.0 PRODUCTION OF CULTURES FROM ASCOSPORES OR DIRECT ISOLATION FROM LEAF MATERIAL TO IDENTIFY MYCOSPHAERELLA SPP. ON BANANA.......... 19 2.1 AIM.............................................................................................................................. 19 2.2 METHODOLOGY........................................................................................................ 19 2.3 MATERIALS AND REAGENTS .................................................................................. 19 2.3.1 RECIPES ................................................................................................................. 20 2.4 PROCEDURE ............................................................................................................. 20 Ascospore Ejection ........................................................................................................... 20 Ascospore Culture ............................................................................................................ 22 Direct Isolation .................................................................................................................. 23 2.5 MORPHOLOGICAL CHARACTERISTICS OF THE PERFECT FORM OF MYCOSPHAERELLA SPP................................................................................................ 24 3.0 IN VITRO PRODUCTION OF MYCOSPHAERELLA SPP ASEXUAL STRUCTURES FOR IDENTIFICATION USING LIGHT MICROSCOPY....................................................... 27 3.1 AIM.............................................................................................................................. 27 3.2 METHODOLOGY........................................................................................................ 27 3.3 MATERIALS AND REAGENTS .................................................................................. 27 3.3.1 RECIPES ................................................................................................................. 28 3.4 PROCEDURE ............................................................................................................. 28 Culture and sporulation..................................................................................................... 28 Cotton blue staining .......................................................................................................... 29 4.0 DETECTION AND IDENTIFICATION OF MYCOSPHAERELLA SPP. ON BANANA USING REAL-TIME PCR ..................................................................................................... 30 4.1 AIM.............................................................................................................................. 30 4.2 METHODOLOGY........................................................................................................ 30 Real-Time PCR Background............................................................................................. 30 TaqMan® Hybridisation Probe Assays .............................................................................. 30 Mycosphaerella spp on Banana Real-time PCR Diagnostic Assay Design...................... 32 Internal Amplification Control ............................................................................................ 36 Enzyme Mastermix ........................................................................................................... 36 3 MYCOSPHAERELLA SPP CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT 4.3 MATERIALS AND REAGENTS .................................................................................. 37 Equipment......................................................................................................................... 37 Reagents and Suppliers.................................................................................................... 37 4.4 PROCEDURE ............................................................................................................. 39 Preparation and storage of real-time PCR stocks............................................................. 39 Notes on Real-time PCR set up........................................................................................ 39 Real-time PCR Set Up Protocol........................................................................................ 40 Real-time PCR Thermal Cycling Protocol......................................................................... 43 4.5 RESULTS INTERPRETATION ................................................................................... 44 Control Assays.................................................................................................................. 44 Mycosphaerella spp on Banana Probe Assays................................................................. 45 Calling a Sample Result.................................................................................................... 46 ACKNOWLEDGEMENT....................................................................................................... 48 REFERENCES ..................................................................................................................... 48 4 MYCOSPHAERELLA SPP CAUSING LEAFSPOT DISEASE ON BANANAS ADVANCED METHODS SUPPLEMENT INTRODUCTION This supplement appends the original Sigatoka Leafspot Disease Manual (2006). The purpose of this supplement is to describe advanced methods for the diagnosis of Mycosphaerella fijiensis (black Sigatoka, BS), Mycosphaerella musicola (yellow Sigatoka, YS) and Mycosphaerella eumusae (Eumusae leafspot disease, ELS). Real-time PCR assays are now routinely used to support the morphological diagnosis of Sigatoka leafspot diseases in Australia. Recently, updated in situ and in vitro techniques were acquired during a laboratory exchange with French scientists Drs Jean Carlier, Marie- Françoise Zapater and Françoise Carreel at the French Agricultural Research Centre for International Development (CIRAD) in Montpellier. In return, Australian-developed, molecular diagnostic assays for black Sigatoka, yellow Sigatoka and Eumusae leafspot disease were transferred to CIRAD for use in routine surveillance of bananas grown in French offshore regions (French Guiana, Guadaloupe, Martinique, New Caledonia and Réunion). Over 20 species of Mycosphaerella have now been shown to occur on banana (Arzanlou et al., 2008). Three of these species are involved in the Sigatoka disease complex (M. fijiensis, M. musicola and M. eumusae) and surveillance for these pathogens is carried out in Australia. A fourth species, Mycosphaerella musae, causes speckle disease which is common in the sub-tropical growing regions of South-east Queensland and New South Wales. Mycosphaerella speckle presents with distinct symptoms making diagnosis straightforward. Light-brown or tan-coloured irregular blotches on the lower leaf surface (appearing as smoky patches on the upper surfaces) tending towards dark purple/black, irregularly-shaped, speckled
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