Agalinis Auriculata (Michx.) S.F
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
"National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary."
Intro 1996 National List of Vascular Plant Species That Occur in Wetlands The Fish and Wildlife Service has prepared a National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary (1996 National List). The 1996 National List is a draft revision of the National List of Plant Species That Occur in Wetlands: 1988 National Summary (Reed 1988) (1988 National List). The 1996 National List is provided to encourage additional public review and comments on the draft regional wetland indicator assignments. The 1996 National List reflects a significant amount of new information that has become available since 1988 on the wetland affinity of vascular plants. This new information has resulted from the extensive use of the 1988 National List in the field by individuals involved in wetland and other resource inventories, wetland identification and delineation, and wetland research. Interim Regional Interagency Review Panel (Regional Panel) changes in indicator status as well as additions and deletions to the 1988 National List were documented in Regional supplements. The National List was originally developed as an appendix to the Classification of Wetlands and Deepwater Habitats of the United States (Cowardin et al.1979) to aid in the consistent application of this classification system for wetlands in the field.. The 1996 National List also was developed to aid in determining the presence of hydrophytic vegetation in the Clean Water Act Section 404 wetland regulatory program and in the implementation of the swampbuster provisions of the Food Security Act. While not required by law or regulation, the Fish and Wildlife Service is making the 1996 National List available for review and comment. -
Earleaf Foxglove (Agalinis Auriculata)
Community Conservation Assessment for Earleaf Foxglove (Agalinis Auriculata) USDA Forest Service, Eastern Region Date Name Location This document is undergoing peer review, comments welcome This Conservation Assessment was prepared to compile the published and unpublished information and serves as a Conservation Assessment for the Eastern Region of the Forest Service. It does not represent a management decision by the U.S. Forest Service. Though the best scientific information available was used and subject experts were consulted in preparation of this document, it is expected that new information will arise. In the spirit of continuous learning and adaptive management, if you have information that will assist in conserving the subject community, please contact the Eastern Region of the Forest Service - Threatened and Endangered Species Program at 310 Wisconsin Avenue, Suite 580 Milwaukee, Wisconsin 53203. Community Conservation Assessment forEarleaf Foxglove (Agalinis Auriculata) 2 Table of Contents EXECUTIVE SUMMARY .............................................................................................. 4 ACKNOWLEDGEMENTS ............................................................................................. 4 COMMUNITY CLASSIFICATION SYSTEM AND SYNONYMS............................ 4 DESCRIPTION OF COMMUNITY............................................................................... 4 COMMUNITY ECOLOGY/ENVIRONMENTAL CONDITIONSError! Bookmark not defined. RANGE OF NATURAL VARIABILITY: COMMUNITY DISTRIBUTION AND CONDITIONS -
State of New York City's Plants 2018
STATE OF NEW YORK CITY’S PLANTS 2018 Daniel Atha & Brian Boom © 2018 The New York Botanical Garden All rights reserved ISBN 978-0-89327-955-4 Center for Conservation Strategy The New York Botanical Garden 2900 Southern Boulevard Bronx, NY 10458 All photos NYBG staff Citation: Atha, D. and B. Boom. 2018. State of New York City’s Plants 2018. Center for Conservation Strategy. The New York Botanical Garden, Bronx, NY. 132 pp. STATE OF NEW YORK CITY’S PLANTS 2018 4 EXECUTIVE SUMMARY 6 INTRODUCTION 10 DOCUMENTING THE CITY’S PLANTS 10 The Flora of New York City 11 Rare Species 14 Focus on Specific Area 16 Botanical Spectacle: Summer Snow 18 CITIZEN SCIENCE 20 THREATS TO THE CITY’S PLANTS 24 NEW YORK STATE PROHIBITED AND REGULATED INVASIVE SPECIES FOUND IN NEW YORK CITY 26 LOOKING AHEAD 27 CONTRIBUTORS AND ACKNOWLEGMENTS 30 LITERATURE CITED 31 APPENDIX Checklist of the Spontaneous Vascular Plants of New York City 32 Ferns and Fern Allies 35 Gymnosperms 36 Nymphaeales and Magnoliids 37 Monocots 67 Dicots 3 EXECUTIVE SUMMARY This report, State of New York City’s Plants 2018, is the first rankings of rare, threatened, endangered, and extinct species of what is envisioned by the Center for Conservation Strategy known from New York City, and based on this compilation of The New York Botanical Garden as annual updates thirteen percent of the City’s flora is imperiled or extinct in New summarizing the status of the spontaneous plant species of the York City. five boroughs of New York City. This year’s report deals with the City’s vascular plants (ferns and fern allies, gymnosperms, We have begun the process of assessing conservation status and flowering plants), but in the future it is planned to phase in at the local level for all species. -
OXYPOLIS RIGIDIOR, a NEW LARVAL FOOD PLANT RECORD for PAPILIO POLYXENES (Papilioniljae)
VOLUME 57, NUMBER 2 149 The author is grateful to the Indian Council of Agricultural Re MARSHALl., C. F. L. & L. DE NICEVILLE. 1883. The butterflies ofIn search, New Delhi for funding the project on Butterflies. dia, Burmah and Ceylon. A descriptive handbook of all the knOWIl species of Rhopalocerous Lepidoptera inhabiting that re LITERATURE CITED gion, with notices of allied species occurring in the neighbouring countries along the border; with numerous illustrations. Vol. 1. BINCHAM, C. T. 1905. Butterflies. Fauna Br. India, l:iv 5ll, pis. Part II. Calcutta Central Press, Calcutta. vii + 327 pp. 1- 10. PINRATANA, B. A. 1998. Butterflies in Thailand, Satyridae, Libythei CORBET, A. S. & H. M. PENDLEDURY. 1992. The butterflies of the dae and Riodinidae. The Viratham Press, Bangkok. 6:vii + 61 Malaya Peninsula. Eliot, J. N. (ed.). 4th ed. Malaya Nat. pp., 44 pis. Soc.:viii + 595 pp., 69 pis. TALBOT, C. 1947. The fauna of British India. Including Ceylon EVANS , w. H. 19,32. The identification ofTndian butterflies. 2nd ed. and Burma. Butterflies. Vol. 2. Taylor and Francis, London, revise,!. Madras, Bombay nat. Hist. Soc. , 1932:x + 454 pp., 32 .506 pp. pis. , 9 figs. WYNTER-BLYTH , M. A. 1957. Butterflies ofthe Indian region. Bom HEMMING , A. F. 1943. The types of genera established by Doublc bay Nat. Hist. Soc. , 19.57:xx + ,523 pp, 72 pis. day (E.) in the genera of diurnal Lepidoptera and by Westwood (J.O. ) in the continuation thereof: a correction regarding the genus Cor'lbas Westwood, (1850). J. Soc. Bib!. Nat. Hist. NAR EN DER SHARMA, Department of Entomology 1(12):470. -
Download Curriculum Vitae
Jason Ager Koontz Biology Department, Augustana College Phone: 309-794-3442 639-38th Street FAX: 309-794-8004 Rock Island, IL 61201 E-mail: [email protected] Education 1993 B.S. (Botany) Iowa State University, Ames, IA (with Distinction, Honors Program, and Phi Beta Kappa) 1995 M.S. (Botany) Miami University, Oxford, OH 2000 Ph.D. (Botany) Washington State University, Pullman, WA Current Position 7/14-present: Chair of Biology 8/11-7/14: Co-Chair of Biology 8/10: Tenured and promoted to Associate Professor 9/04-8/10: Assistant Professor of Biology Becoming Biologists (BI150), General Botany (BI220), Cell Biology (BI210), Nutrition (BI263; 2004-2006), Natural History of Ireland (BI328; 2010, 2013), Conservation Biology (BI410), Conservation Biology Senior Inquiry (BI464) Non-Academic Positions 5/12-present: Research Associate, Rancho Santa Ana Botanic Garden, Claremont, CA. 1/06-present: Research Associate, Department of Botany, The Field Museum of Natural History, Chicago, IL. 10/04-present: Adjunct Assistant Professional Scientist, Illinois Natural History Survey, Prairie Research Institute, University of Illinois Urbana-Champaign, IL. 5/00-9/04: Assistant Research Scientist III, Plant Systematist, Centers for Biodiversity and Wildlife and Plant Ecology, Illinois Natural History Survey, Champaign, IL. Academic Positions 10/01-12/07: Affiliate Assistant Professor, Department of Plant Biology, University of Illinois at Urbana-Champaign, IL. 8/95-5/00: Graduate Teaching Assistant, Department of Botany, Washington State University, -
Circumscription of Apiaceae Tribe Oenantheae
South African Journal of Botany 2004, 70(3): 393–406 Copyright © NISC Pty Ltd Printed in South Africa — All rights reserved SOUTH AFRICAN JOURNAL OF BOTANY ISSN 0254–6299 Circumscription of Apiaceae tribe Oenantheae TM Hardway1, K Spalik2, MF Watson3, DS Katz-Downie1 and SR Downie1* 1 Department of Plant Biology, University of Illinois, Urbana 61801, United States of America 2 Department of Plant Systematics and Geography, Warsaw University, Aleje Ujazdowskie 4, 00-478 Warsaw, Poland 3 Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland, United Kingdom * Corresponding author, email: [email protected] Received 18 August 2003, accepted in revised form 17 November 2003 Previous molecular systematic investigations into the Sium and Trepocarpus. Relationships inferred from higher-level relationships of Apiaceae subfamily phylogenetic analyses of nuclear rDNA ITS sequences Apioideae have revealed a strongly supported clade from 64 accessions representing all 17 genera reveal recognised as tribe Oenantheae Dumort. These plants that four genera are not monophyletic. Bifora and may have clusters of fibrous or tuberous-thickened Cryptotaenia have members that fall outside of the tribe; roots, corky-thickened fruits, and other adaptations for Berula and Sium each comprise two or more lineages existence in wet or aquatic habitats. In some species, within Oenantheae. The St Helena endemics, Sium the leaves may be finely dissected or linear-septate and bracteatum and S. burchellii, ally with African Berula much reduced. We have initiated collaborative studies erecta; this clade is sister to the African endemic to produce a comprehensive estimate of phylogeny of species Sium repandum and Afrocarum imbricatum, the tribe, but such investigations are thwarted because and this entire group is allied closely with north tem- information on the composition of the tribe is lacking. -
2019 Domain Management Plan
Domain Management Plan 2019-2029 FINAL DRAFT 12/20/2019 Owner Contact: Amy Turner, Ph.D., CWB Director of Environmental Stewardship and Sustainability The University of the South Sewanee, Tennessee Office: 931-598-1447 Office: Cleveland Annex 110C Email: [email protected] Reviewed by: The Nature Conservancy Forest Stewards Guild ____________________________________________________________________________ Tract Location: Franklin and Marion Counties, Tennessee Centroid Latitude 35.982963 Longitude -85.344382 Tract Size: 13,036 acres | 5,275 hectares Land Manager: Office of Environmental Stewardship and Sustainability, The University of the South, Sewanee, Tennessee 2 Executive Summary The primary objective of this management plan is to provide a framework to outline future management and outline operations for the Office of Environmental Stewardship and Sustainability (OESS) over the next ten years. In this plan, we will briefly introduce the physical and biological setting, past land use, and current uses of the Domain. The remainder of the plan consists of an assessment of the forest, which has been divided into six conservation areas. These conservation areas contain multiple management compartments, and the six areas have similarities in topographical position and past land use. Finally, the desired future condition and project summary of each conservation area and compartment has been outlined. Background The University of the South consists of an academic campus (382 acres) with adjacent commercial and residential areas (783 acres) that are embedded within and surrounded by diverse natural lands (11,838 acres). The term “Domain” is used interchangeably to describe both the entire ~13,000 acres and the 11,800-acre natural land matrix (also referred to as the “Greater Domain”). -
National List of Vascular Plant Species That Occur in Wetlands 1996
National List of Vascular Plant Species that Occur in Wetlands: 1996 National Summary Indicator by Region and Subregion Scientific Name/ North North Central South Inter- National Subregion Northeast Southeast Central Plains Plains Plains Southwest mountain Northwest California Alaska Caribbean Hawaii Indicator Range Abies amabilis (Dougl. ex Loud.) Dougl. ex Forbes FACU FACU UPL UPL,FACU Abies balsamea (L.) P. Mill. FAC FACW FAC,FACW Abies concolor (Gord. & Glend.) Lindl. ex Hildebr. NI NI NI NI NI UPL UPL Abies fraseri (Pursh) Poir. FACU FACU FACU Abies grandis (Dougl. ex D. Don) Lindl. FACU-* NI FACU-* Abies lasiocarpa (Hook.) Nutt. NI NI FACU+ FACU- FACU FAC UPL UPL,FAC Abies magnifica A. Murr. NI UPL NI FACU UPL,FACU Abildgaardia ovata (Burm. f.) Kral FACW+ FAC+ FAC+,FACW+ Abutilon theophrasti Medik. UPL FACU- FACU- UPL UPL UPL UPL UPL NI NI UPL,FACU- Acacia choriophylla Benth. FAC* FAC* Acacia farnesiana (L.) Willd. FACU NI NI* NI NI FACU Acacia greggii Gray UPL UPL FACU FACU UPL,FACU Acacia macracantha Humb. & Bonpl. ex Willd. NI FAC FAC Acacia minuta ssp. minuta (M.E. Jones) Beauchamp FACU FACU Acaena exigua Gray OBL OBL Acalypha bisetosa Bertol. ex Spreng. FACW FACW Acalypha virginica L. FACU- FACU- FAC- FACU- FACU- FACU* FACU-,FAC- Acalypha virginica var. rhomboidea (Raf.) Cooperrider FACU- FAC- FACU FACU- FACU- FACU* FACU-,FAC- Acanthocereus tetragonus (L.) Humm. FAC* NI NI FAC* Acanthomintha ilicifolia (Gray) Gray FAC* FAC* Acanthus ebracteatus Vahl OBL OBL Acer circinatum Pursh FAC- FAC NI FAC-,FAC Acer glabrum Torr. FAC FAC FAC FACU FACU* FAC FACU FACU*,FAC Acer grandidentatum Nutt. -
Invisible Connections: Introduction to Parasitic Plants Dr
Invisible Connections: Introduction to Parasitic Plants Dr. Vanessa Beauchamp Towson University What is a parasite? • An organism that lives in or on an organism of another species (its host) and benefits by deriving nutrients at the other's expense. Symbiosis https://www.superpharmacy.com.au/blog/parasites-protozoa-worms-ectoparasites Food acquisition in plants: Autotrophy Heterotrophs (“different feeding”) • True parasites: obtain carbon compounds from host plants through haustoria. • Myco-heterotrophs: obtain carbon compounds from host plants via Image Credit: Flickr User wackybadger, via CC mycorrhizal fungal connection. • Carnivorous plants (not parasitic): obtain nutrients (phosphorus, https://commons.wikimedia.org/wiki/File:Pin nitrogen) from trapped insects. k_indian_pipes.jpg http://www.welivealot.com/venus-flytrap- facts-for-kids/ Parasite vs. Epiphyte https://chatham.ces.ncsu.edu/2014/12/does-mistletoe-harm-trees-2/ By © Hans Hillewaert /, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=6289695 True Parasitic Plants • Gains all or part of its nutrition from another plant (the host). • Does not contribute to the benefit of the host and, in some cases, causing extreme damage to the host. • Specialized peg-like root (haustorium) to penetrate host plants. https://www.britannica.com/plant/parasitic-plant https://chatham.ces.ncsu.edu/2014/12/does-mistletoe-harm-trees-2/ Diversity of parasitic plants Eudicots • Parasitism has evolved independently at least 12 times within the plant kingdom. • Approximately 4,500 parasitic species in Monocots 28 families. • Found in eudicots and basal angiosperms • 1% of the dicot angiosperm species • No monocot angiosperm species Basal angiosperms Annu. Rev. Plant Biol. 2016.67:643-667 True Parasitic Plants https://www.alamy.com/parasitic-dodder-plant-cuscuta-showing-penetration-parasitic-haustor The defining structural feature of a parasitic plant is the haustorium. -
Species List For: Valley View Glades NA 418 Species
Species List for: Valley View Glades NA 418 Species Jefferson County Date Participants Location NA List NA Nomination and subsequent visits Jefferson County Glade Complex NA List from Gass, Wallace, Priddy, Chmielniak, T. Smith, Ladd & Glore, Bogler, MPF Hikes 9/24/80, 10/2/80, 7/10/85, 8/8/86, 6/2/87, 1986, and 5/92 WGNSS Lists Webster Groves Nature Study Society Fieldtrip Jefferson County Glade Complex Participants WGNSS Vascular Plant List maintained by Steve Turner Species Name (Synonym) Common Name Family COFC COFW Acalypha virginica Virginia copperleaf Euphorbiaceae 2 3 Acer rubrum var. undetermined red maple Sapindaceae 5 0 Acer saccharinum silver maple Sapindaceae 2 -3 Acer saccharum var. undetermined sugar maple Sapindaceae 5 3 Achillea millefolium yarrow Asteraceae/Anthemideae 1 3 Aesculus glabra var. undetermined Ohio buckeye Sapindaceae 5 -1 Agalinis skinneriana (Gerardia) midwestern gerardia Orobanchaceae 7 5 Agalinis tenuifolia (Gerardia, A. tenuifolia var. common gerardia Orobanchaceae 4 -3 macrophylla) Ageratina altissima var. altissima (Eupatorium rugosum) white snakeroot Asteraceae/Eupatorieae 2 3 Agrimonia pubescens downy agrimony Rosaceae 4 5 Agrimonia rostellata woodland agrimony Rosaceae 4 3 Allium canadense var. mobilense wild garlic Liliaceae 7 5 Allium canadense var. undetermined wild garlic Liliaceae 2 3 Allium cernuum wild onion Liliaceae 8 5 Allium stellatum wild onion Liliaceae 6 5 * Allium vineale field garlic Liliaceae 0 3 Ambrosia artemisiifolia common ragweed Asteraceae/Heliantheae 0 3 Ambrosia bidentata lanceleaf ragweed Asteraceae/Heliantheae 0 4 Ambrosia trifida giant ragweed Asteraceae/Heliantheae 0 -1 Amelanchier arborea var. arborea downy serviceberry Rosaceae 6 3 Amorpha canescens lead plant Fabaceae/Faboideae 8 5 Amphicarpaea bracteata hog peanut Fabaceae/Faboideae 4 0 Andropogon gerardii var. -
Missouriensis Volume 28 / 29
Missouriensis Volume 28/29 (2008) In this issue: Improved Status of Auriculate False Foxglove (Agalinis auriculata) in Missouri in 2007 Tim E. Smith, Tom Nagel, and Bruce Schuette ......................... 1 Current Status of Yellow False Mallow (Malvastrum hispidum) in Missouri Tim E. Smith.................................................................................... 5 Heliotropium europaeum (Heliotropiaceae) New to Missouri Jay A. Raveill and George Yatskievych ..................................... 10 Melica mutica (Poaceae) New for the Flora of Missouri Alan E. Brant ................................................................................. 18 Schoenoplectus californicus (Cyperaceae) New to Missouri Timothy E. Vogt and Paul M. McKenzie ................................. 22 Flora of Galloway Creek Nature Park, Howell County, Missouri Bill Summers .................................................................................. 27 Journal of the Missouri Native Plant Society Missouriensis, Volume 28/29 2008 1 IMPROVED STATUS OF AURICULATE FALSE FOXGLOVE (AGALINIS AURICULATA) IN MISSOURI IN 2007 Tim E. Smith Missouri Department of Conservation P.O. Box 180, Jefferson City, MO 65102-0180 Tom Nagel Missouri Department of Conservation 701 James McCarthy Drive St. Joseph, MO 64507-2194 Bruce Schuette Missouri Department of Natural Resources Cuivre River State Park 678 State Rt. 147 Troy, MO 63379 Populations of annual plant species are known to have periodic “boom” and “bust” years as well as years when plant numbers more closely approach long-term averages. In tracking populations of plant species of conservation concern (Missouri Natural Heritage Program, 2007), there are sometimes also boom years in the number of reports of new populations. Because of reports of five new populations and a surge in numbers of plants at some previously-known sites, 2007 provided encouraging news for the conservation of the auriculate false foxglove [Agalinis auriculata (Michx.) Blake] in Missouri.