The Intracellular Ratio of Cysteine and Cystine in Various Tissues

Total Page:16

File Type:pdf, Size:1020Kb

The Intracellular Ratio of Cysteine and Cystine in Various Tissues Biochem. J. (1967) 105, 891 891 Printed in Great Britain The Intracellular Ratio of Cysteine and Cystine in Various Tissues By J. C. CRAWHALL* AND S. SEGALt Clinical Endocrinology Branch, National In8titute of Arthriti8 and Metabolic Di8ease8, National Institute8 of Health, Bethe8da, Md., U.S.A. (Received 20 February 1967) 1. The cysteine-cystine ratio was measured in rat kidney cortex, diaphragm, jejunum, liver and brain. 2. This ratio was determined by incubating these tissues in buffer containing [35S]cystine and then homogenizing the tissue in a buffered solution of N-ethyhnaleimide. The products of this reaction were separated by high-voltage electrophoresis and the radioactivity in the cystine and 2-(L-2'-amino- 2'-carboxyethylthio)-N-ethylsuccinimide regions was determined. 3. In these tissues cyst(e)ine was mainly present in the reduced form. 4. After incubation of [35S]cystine with rat jejunal segments it was found that 36% of the cystine in the medium has been reduced. 5. Anaerobiosis, Na+-free media, glucose and high concentrations of cystine and lysine were found not to affect significantly the cysteine-cystine ratio in rat kidney-cortex slices. Numerous studies of the kinetics of amino acid The method of measuring cystine-cysteine ratios transport into various tissues in vitro have been described in this paper has been designed to remove described. One of the requirements of this type of all the cellular enzyme activity as rapidly as study with radioactive isotopically labelled amino possible at the end ofthe tissue incubation period by acids is that the radioactivity measured within the precipitation of the enzymes with trichloroacetic tissue corresponds to the amino acid being studied acid. This prevents any further reduction of intra- and not a metabolite of that amino acid. Investiga- cellular cystine during the isolation procedure. The tions of cystine transport have so far not distin- reoxidation of cysteine was prevented by blocking guished between the intracellular oxidized and the free thiol group with NEM.4 It was found that reduced forms ofthe amino acid. This investigation this reagent reacted much faster with thiol groups was designed to use the active transport mechanism than did iodoacetate. Before true intracellular of various tissues to introduce radioactive iso- cystine-cysteine ratios can be calculated from topically labelled cystine into the tissue and then experiments in which tissues have been incubated the extent of reduction of the labelled cystine was in a buffer containing [35S]cystine, it is necessary measured. to make a correction for the amount of amino Previous studies of the ratio of reduced to acid retained in the tissue that is in the extra- oxidized glutathione and of cysteine to cystine in cellular fluid and has not entered the cells. This certain tissues by colorimetric methods have can be done by assuming that the concentration of indicated that glutathione and cysteine are amino acid in the extracellular fluid is the same as principally in the reduced state (Fujita & Numata, that in the incubating medium. This correction 1938a,b). More than one possible mechanism by was carried out according to the procedure of which this reduction can be maintained have been Rosenberg, Blair & Segal (1961). We have measured described. Cystine reduction can occur by coupling the cystine-cysteine ratio in the medium as well as through glutathione and glutathione reductase to the tissue at the end of the incubation period. In NADH (Pihl, Eldjarn & Bremer, 1957). A direct those cases where no reduction of cystine in the cystine reductase has been described (Patrick, medium occurred, it was assumed that all the 1962) but not characterized and the existence of cystine trapped in the ECF would be in the oxidized such a separate enzyme mechanism of this type has form. If some of the cystine in the medium was been questioned (Black, 1963). reduced it was assumed that the same cystine- ratio would be in the ECF as was * Present address: Professorial Medical Unit, St cysteine present Bartholomew's Hospital, London, E.C. 1. present in the medium. t Present address: The Children's Hospital of Phila- $ Abbreviations: NEM, N-ethylmaleimide; Cys-NEM, delphia, Department of Pediatrics, University of Pennsyl- 2 - (L-2'-amino-2'-carboxyethylthio) - N - ethylsuccinimide; vania Medical School, Philadelphia, Pa., U.S.A. ECF, extracellular fluid; ICF, intracellular fluid. 892 J. C. CRAWHALL AND S. SEGAL 1967 MATERIALS AND METHODS washing the tissue was transferred to filter paper for blotting Isotopically labelled compounds. [35S]Cystine was pur- and weighing. Distribution ratios, the ratio counts/min./ml. chased from Schwarz BioResearch Inc. (Orangeburg, N.Y., of ICF to counts/min./ml. of medium, were calculated U.S.A.) and made up as a 2mM solution in dilute NaOH according to Rosenberg et al. (1961) after extracting the containing about lOpc/ml. Solutions were made frequently tissue amino acid pool with warm water. (about every 2 weeks) since analysis of these solutions by Determination of total tissue water and extracellular space. high-voltage electrophoresis revealed oxidation to cysteic Total tissue water was determined from the difference acid to occur with time. Unless stated otherwise 1OO,]. of between tissue weight after blotting the tissue slices and the this solution was added per flask to give a final concentration weight after drying them in a crucible at 1050 for 24hr. 0-1 mM. When cystine was converted into cysteine by This value was expressed as per cent of wet-tissue weight. dithiothreitol, 50,l. was added to give 0- mM-cysteine. The extracellular space of the tissues was determined by [carboxy-14C]Inulin was obtained from New England the method of Rosenberg, Downing & Segal (1962) with Nuclear Corp. (Boston, Mass., U.S.A.). [carboxy-14C]inulin. Chemicals. Dithiothreitol and NEM were obtained from Use of iodoacetate to block cysteine thiol groups and the rate Calbiochem (Los Angeles, Calif., U.S.A.). Cys-NEM was of [35S]cysteine reaction with iodoacetate. The method of prepared according to Smyth, Nagamatsu & Fruton (1960). Brigham, Stein & Moore (1959) was utilized. After incuba- High-voltage paper electrophoresis. This was carried out tion in [35S]cystine rat kidney-cortex slices were dipped in with a Gilson Electrophoretor model D in 6-8% formic acid 0-9% NaCl soln., blotted and homogenized in a Potter- at 450 at 4000v for 2 hr. with 43 in. Whatman 3MM papers Elvehjem homogenizer for 1 min. in 1 ml. of 0-IM-phosphate (Rosenberg, Crawhall & Segal, 1967). buffer, pH 7-6, containing 100mg. of iodoacetic acid, Under these conditions, cystine migrates on the filter 42mg. ofNaHCO3 and 20mg. ofdisodium EDTA. A 0-1 ml. paper 2 in. further than Cys-NEM and these are both sample was removed at increasing times (5, 10, 20 and separated by 6in. from the more acid products of cystine 30min.) and mixed with 0-1 ml. of 10% trichloroacetic acid. metabolism (cysteic acid, cysteinesulphinic acid and Each of these fractions was then submitted to high-voltage taurine). electrophoresis and the radioactivity in the cystine and Ninhydrin reagent used for staining marker amino acids carboxymethylcysteine regions was determined. As a was prepared as follows. Ninhydrin (4g.) was dissolved in zero-time incubation control three kidney slices were added 400ml. of acetone. Cadmium acetate (0-4g.) was dissolved to 1 ml. of iodoacetate soln. containing 0-02mM-[35S]cystine in a mixture of 8ml. of acetic acid and 16ml. of water. The and homogenized immediately. After 30min. lml. of cadmium acetate solution was then added to the ninhydrin trichloroacetic acid was added and samples of this mixture solution. The resulting reagent could be used for about were submitted to electrophoresis. 3 weeks if stored in a dark bottle. Unstained areas corre- The rate ofreaction of [35S]cysteine with iodoacetate was sponding to cystine and Cys-NEM were cut from the measured as follows: 50,ul. of [35S]cystine (2mM) and 50,u1. papers, placed in glass vials with 10ml. of toluene-based of dithiothreitol (10mm) were added to 0-9ml. of potassium phosphor (Liquifluor; New England Nuclear Corp.) and the phosphate buffer (0-1M, pH7-4). After 10min. iodoacetate radioactivity was determined by liquid-scintillation count- solution (1 ml.) was added, after which 0-1 ml. samples were ing (Tri-Carb liquid-scintillation spectrometer; Packard removed at 0, 5, 10, 20 and 30min., and added to 0-1ml. of Instrument Co.) at approx. 50% efficiency. 6-8% formic acid. Samples (2Opl.) ofeach mixture were sub- Preparation of tissues for studies in vitro. Tissues were mitted to high-voltage electrophoresis and the cystine and obtained from 150g. male Sprague-Dawley rats, which had carboxymethylcysteine regions counted for radioactivity. been fed ad libitum on a Purina rat chow diet. Rate of reacion of cysteine with NEM and the effect of The technique for incubations and study of intracellular kidneyslices on [35S]cystine in the presence of NEM. The rate accumulation of isotopically labelled amino acids was of reaction of cysteine with NEM was studied in a similar essentially that described by Rosenberg et al. (1961) for manner to the previous experiment. [35$]Cystine (50zl., kidney-cortex slices and by Marsh, Rosenberg & Segal 2mM), dithiothreitol (50,u1., 10mM) and potassium phos- (1962) for jejunal segments and diaphragm. Kidney and phate buffer (0-1M, pH7-4; 0-9ml.) were mixed together. liver slices were prepared by a Stadie-Riggs microtome After 6min., NEM (lml., 20mM) in phosphate buffer (0-4mm. thick). (1 ml., 0-1 M, pH 7-4) was added and samples (0-1 ml.) were The following tissues were incubated in Krebs-Ringer removed at increasing intervals of time (0, 1, 2-5, 10min.) bicarbonate buffer, pH 7-4 (2 ml.) (Krebs & Henseleit, and added to 6-8% formic acid (0-lml.).
Recommended publications
  • Biochemistry I Enzymes
    BIOCHEMISTRY I 3rd. Stage Lec. ENZYMES Biomedical Importance: Enzymes, which catalyze the biochemical reactions, are essential for life. They participate in the breakdown of nutrients to supply energy and chemical building blocks; the assembly of those building blocks into proteins, DNA, membranes, cells, and tissues; and the harnessing of energy to power cell motility, neural function, and muscle contraction. The vast majority of enzymes are proteins. Notable exceptions include ribosomal RNAs and a handful of RNA molecules imbued with endonuclease or nucleotide ligase activity known collectively as ribozymes. The ability to detect and to quantify the activity of specific enzymes in blood, other tissue fluids, or cell extracts provides information that complements the physician’s ability to diagnose and predict the prognosis of many diseases. Further medical applications include changes in the quantity or in the catalytic activity of key enzymes that can result from genetic defects, nutritional deficits, tissue damage, toxins, or infection by viral or bacterial pathogens (eg, Vibrio cholerae). Medical scientists address imbalances in enzyme activity by using pharmacologic agents to inhibit specific enzymes and are investigating gene therapy as a means to remedy deficits in enzyme level or function. In addition to serving as the catalysts for all metabolic processes, their impressive catalytic activity, substrate specificity, and stereospecificity enable enzymes to fulfill key roles in additional processes related to human health and well-being. Proteases and amylases augment the capacity of detergents to remove dirt and stains, and enzymes play important roles in producing or enhancing the nutrient value of food products for both humans and animals.
    [Show full text]
  • The Cysteine Proteome 13 N Q114 Young-Mi Go, Joshua D
    Free Radical Biology and Medicine ∎ (∎∎∎∎) ∎∎∎–∎∎∎ 1 Contents lists available at ScienceDirect 2 3 4 Free Radical Biology and Medicine 5 6 journal homepage: www.elsevier.com/locate/freeradbiomed 7 8 9 Review Article 10 11 12 The cysteine proteome 13 n Q114 Young-Mi Go, Joshua D. Chandler, Dean P. Jones 15 Division of Pulmonary, Allergy and Critical Care Medicine, Department of Medicine, Emory University, Atlanta, GA 30322, USA 16 17 18 article info abstract 19 20 Article history: The cysteine (Cys) proteome is a major component of the adaptive interface between the genome and 21 Received 17 November 2014 the exposome. The thiol moiety of Cys undergoes a range of biologic modifications enabling biological 22 Received in revised form switching of structure and reactivity. These biological modifications include sulfenylation and disulfide 23 17 March 2015 formation, formation of higher oxidation states, S-nitrosylation, persulfidation, metalation, and other Accepted 22 March 2015 24 modifications. Extensive knowledge about these systems and their compartmentalization now provides 25 a foundation to develop advanced integrative models of Cys proteome regulation. In particular, detailed Keywords: 26 understanding of redox signaling pathways and sensing networks is becoming available to allow the Cysteine proteome discrimination of network structures. This research focuses attention on the need for atlases of Cys 27 Redox proteome modifications to develop systems biology models. Such atlases will be especially useful for integrative 28 Redox signaling studies linking the Cys proteome to imaging and other omics platforms, providing a basis for improved 29 Functional network Thiol redox-based therapeutics. Thus, a framework is emerging to place the Cys proteome as a complement to 30 Free radicals the quantitative proteome in the omics continuum connecting the genome to the exposome.
    [Show full text]
  • Metabolic Regulation of Ferroptosis in Cancer
    biology Review Metabolic Regulation of Ferroptosis in Cancer Min Ji Kim 1,2,† , Greg Jiho Yun 1,2,† and Sung Eun Kim 1,2,* 1 Department of Biosystems and Biomedical Sciences, College of Health Sciences, Korea University, Seoul 305-350, Korea; [email protected] (M.J.K.); [email protected] (G.J.Y.) 2 Department of Integrated Biomedical and Life Sciences, College of Health Sciences, Korea University, Seoul 305-350, Korea * Correspondence: [email protected]; Tel.: +82-2-3290-5647 † These authors contributed equally to this work as co-first authors. Simple Summary: Ferroptosis is a recently defined nonapoptotic form of cell death that is associated with various human diseases, including cancer. As ferroptosis is caused by an overdose of lipid peroxidation resulting from dysregulation of the cellular antioxidant system, it is inherently closely associated with cellular metabolism. Here, we provide an updated review of the recent studies that have shown mechanisms of metabolic regulation of ferroptosis in the context of cancer. Abstract: Ferroptosis is a unique cell death mechanism that is executed by the excessive accumulation of lipid peroxidation in cells. The relevance of ferroptosis in multiple human diseases such as neurodegeneration, organ damage, and cancer is becoming increasingly evident. As ferroptosis is deeply intertwined with metabolic pathways such as iron, cyst(e)ine, glutathione, and lipid metabolism, a better understanding of how ferroptosis is regulated by these pathways will enable the precise utilization or prevention of ferroptosis for therapeutic uses. In this review, we present an update of the mechanisms underlying diverse metabolic pathways that can regulate ferroptosis in cancer.
    [Show full text]
  • Molecular Basis for Redox Control by the Human Cystine/Glutamate Antiporter
    bioRxiv preprint doi: https://doi.org/10.1101/2021.08.09.455631; this version posted August 9, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Molecular basis for redox control by the human cystine/glutamate antiporter System xc-. Joanne L. Parker1, *, #, Justin C. Deme2,3,4#, Dimitrios Kolokouris1, Gabriel Kuteyi1, Philip C. Biggin1, Susan M. Lea2,3,4 *, Simon Newstead1,5*. 1Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK; 2Dunn School of Pathology, University of Oxford, Oxford, OX1 3RE, 3 Central Oxford Structural Molecular Imaging Centre, University of Oxford, South Parks Road, Oxford, OX1 3RE, 4Center for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA, 5The Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford, OX1 3QU, UK. Cysteine plays an essential role in cellular redox homeostasis as a key constituent of the tripeptide glutathione (GSH). A rate limiting step in cellular GSH synthesis is the availability of cysteine. However, circulating cysteine exists in the blood as the oxidised di-peptide cystine, requiring specialised transport systems for its import into the cell. System xc- is a dedicated cystine transporter, importing cystine in exchange for intracellular glutamate. To counteract elevated levels of reactive oxygen species in cancerous cells system xc- is frequently upregulated, making it an attractive target for anticancer therapies. However, the molecular basis for ligand recognition remains elusive, hampering efforts to specifically target this transport system.
    [Show full text]
  • O O2 Enzymes Available from Sigma Enzymes Available from Sigma
    COO 2.7.1.15 Ribokinase OXIDOREDUCTASES CONH2 COO 2.7.1.16 Ribulokinase 1.1.1.1 Alcohol dehydrogenase BLOOD GROUP + O O + O O 1.1.1.3 Homoserine dehydrogenase HYALURONIC ACID DERMATAN ALGINATES O-ANTIGENS STARCH GLYCOGEN CH COO N COO 2.7.1.17 Xylulokinase P GLYCOPROTEINS SUBSTANCES 2 OH N + COO 1.1.1.8 Glycerol-3-phosphate dehydrogenase Ribose -O - P - O - P - O- Adenosine(P) Ribose - O - P - O - P - O -Adenosine NICOTINATE 2.7.1.19 Phosphoribulokinase GANGLIOSIDES PEPTIDO- CH OH CH OH N 1 + COO 1.1.1.9 D-Xylulose reductase 2 2 NH .2.1 2.7.1.24 Dephospho-CoA kinase O CHITIN CHONDROITIN PECTIN INULIN CELLULOSE O O NH O O O O Ribose- P 2.4 N N RP 1.1.1.10 l-Xylulose reductase MUCINS GLYCAN 6.3.5.1 2.7.7.18 2.7.1.25 Adenylylsulfate kinase CH2OH HO Indoleacetate Indoxyl + 1.1.1.14 l-Iditol dehydrogenase L O O O Desamino-NAD Nicotinate- Quinolinate- A 2.7.1.28 Triokinase O O 1.1.1.132 HO (Auxin) NAD(P) 6.3.1.5 2.4.2.19 1.1.1.19 Glucuronate reductase CHOH - 2.4.1.68 CH3 OH OH OH nucleotide 2.7.1.30 Glycerol kinase Y - COO nucleotide 2.7.1.31 Glycerate kinase 1.1.1.21 Aldehyde reductase AcNH CHOH COO 6.3.2.7-10 2.4.1.69 O 1.2.3.7 2.4.2.19 R OPPT OH OH + 1.1.1.22 UDPglucose dehydrogenase 2.4.99.7 HO O OPPU HO 2.7.1.32 Choline kinase S CH2OH 6.3.2.13 OH OPPU CH HO CH2CH(NH3)COO HO CH CH NH HO CH2CH2NHCOCH3 CH O CH CH NHCOCH COO 1.1.1.23 Histidinol dehydrogenase OPC 2.4.1.17 3 2.4.1.29 CH CHO 2 2 2 3 2 2 3 O 2.7.1.33 Pantothenate kinase CH3CH NHAC OH OH OH LACTOSE 2 COO 1.1.1.25 Shikimate dehydrogenase A HO HO OPPG CH OH 2.7.1.34 Pantetheine kinase UDP- TDP-Rhamnose 2 NH NH NH NH N M 2.7.1.36 Mevalonate kinase 1.1.1.27 Lactate dehydrogenase HO COO- GDP- 2.4.1.21 O NH NH 4.1.1.28 2.3.1.5 2.1.1.4 1.1.1.29 Glycerate dehydrogenase C UDP-N-Ac-Muramate Iduronate OH 2.4.1.1 2.4.1.11 HO 5-Hydroxy- 5-Hydroxytryptamine N-Acetyl-serotonin N-Acetyl-5-O-methyl-serotonin Quinolinate 2.7.1.39 Homoserine kinase Mannuronate CH3 etc.
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2006/0275279 A1 Rozzell Et Al
    US 20060275279A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2006/0275279 A1 ROZZell et al. (43) Pub. Date: Dec. 7, 2006 (54) METHODS FOR DISSOLVING CYSTINE (22) Filed: Jun. 6, 2005 STONES AND REDUCING CYSTINE IN URINE Publication Classification (76) Inventors: J. David Rozzell, Burbank, CA (US); (51) Int. Cl. Kavitha Vedha-Peters, Pasadena, CA A6II 38MSI (2006.01) (US) (52) U.S. Cl. ............................................................ 424/94.5 Correspondence Address: CHRISTIE, PARKER & HALE, LLP (57) ABSTRACT PO BOX 7O68 PASADENA, CA 91109–7068 (US) The present invention is directed to an improved method of treating cystinuria, utilizing the catalytic ability of cystinase (21) Appl. No.: 11/146,551 to increase the rate of cystine Stone dissolution. Patent Application Publication Dec. 7, 2006 Sheet 1 of 4 US 2006/0275279 A1 Hs1N1 Ncoh L-Homocysteine -- H2 O HOC n1ns 1-1N CO2H Cystathionine?3-lyase ls CO2H H2 Pyruvate L-Cystathionine H NH FIG. 1. Metabolic Reaction Catalyzed by Cystathionine-?s-Lyase Patent Application Publication Dec. 7, 2006 Sheet 2 of 4 US 2006/0275279 A1 NH2 Hs1 S Y1Ncoh L-Thiocysteine -- NH2 O Hozen-1- 1N1 no H Cystathionine e i 2 B-lyase CO2H NH2 P L-CystineA- y ruvate -- NH FIG. 2. "Un-Natural" Reaction Catalyzed by Cystathionine-?s-Lyase on L-Cystine Patent Application Publication Dec. 7, 2006 Sheet 3 of 4 US 2006/0275279 A1 Dissolution of Cystine Stones with Cystathionine beta-lyase (MetC) s -o-control (no MetC) al -H 1 mg/mL MetC g - 5 mg/mL MetC 3. -- 10 mg/mL MetC S.
    [Show full text]
  • Redox Homeostatis and Stress in Mouse Livers Lacking the Nadph
    REDOX HOMEOSTASIS AND STRESS IN MOUSE LIVERS LACKING THE NADPH-DEPENDENT DISULFIDE REDUCTASE SYSTEMS by Colin Gregory Miller A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemistry MONTANA STATE UNIVERSITY Bozeman, Montana November 2019 ©COPYRIGHT by Colin Gregory Miller 2019 All Rights Reserved ii DEDICATION I would like to dedicate this thesis to my dear friends Adrienne Arnold, Jacob Artz, Aoife Casey, Michael Christman, Phil Hartman, Ky Mickelsen, Sarah Partovi, Greg Prussia and Danica Walsh. Your support has been indescribably generous and completely invaluable. My quality of life, especially during graduate school, has been immeasurably improved by you all and I count myself incredibly lucky to call you my friends and colleagues. Most importantly, I would like to dedicate this degree to my mom. Any standard of excellence I have ever held has been inspired by you. Your compassion and generosity to others, your unwavering positivity and resilience are a constant source of inspiration. I would consider myself a complete success if I grow up to be half the person you are. iii ACKNOWLEDGEMENTS First, I would like to acknowledge support for the work presented in this thesis provided by the NIH (AG055022) and Montana State University. I would also like to acknowledge committee members Dr. Mary Cloninger and Dr. Brian Bothner for invaluable scientific support and guidance. I would like to thank Dr. Loretta Dorn, Dr. James Hohman and the Chemistry Department of Fort Hays State University for providing me the training and desire to pursue a life in science.
    [Show full text]
  • Cysteine: an Overlooked Energy and Carbon Source
    www.nature.com/scientificreports OPEN Cysteine: an overlooked energy and carbon source Luise Göbbels1, Anja Poehlein2, Albert Dumnitch1, Richard Egelkamp2, Cathrin Kröger1, Johanna Haerdter3, Thomas Hackl3, Artur Feld4, Horst Weller4, Rolf Daniel2, Wolfgang R. Streit1 & Marie Charlotte Schoelmerich1* Biohybrids composed of microorganisms and nanoparticles have emerged as potential systems for bioenergy and high-value compound production from CO2 and light energy, yet the cellular and metabolic processes within the biological component of this system are still elusive. Here we dissect the biohybrid composed of the anaerobic acetogenic bacterium Moorella thermoacetica and cadmium sulphide nanoparticles (CdS) in terms of physiology, metabolism, enzymatics and transcriptomic profling. Our analyses show that while the organism does not grow on l-cysteine, it is metabolized to acetate in the biohybrid system and this metabolism is independent of CdS or light. CdS cells have higher metabolic activity, despite an inhibitory efect of Cd2+ on key enzymes, because of an intracellular storage compound linked to arginine metabolism. We identify diferent routes how cysteine and its oxidized form can be innately metabolized by the model acetogen and what intracellular mechanisms are triggered by cysteine, cadmium or blue light. Anaerobic microorganisms play a pivotal role in the global cycling of elements and nutrients, are key in determin- ing the health of animals and humans and are important players for biotechnological and industrial processes to solve tomorrow’s challenges of pollution, resource scarcity and energy requirements 1,2. An innovative proof-of- concept study has recently been described in which a non-photosynthetic anaerobic bacterium becomes photo- synthetic by coupling it to CdS nanoparticles3.
    [Show full text]
  • Molecular Mechanism and Metabolic Function of the S
    MOLECULAR MECHANISM AND METABOLIC FUNCTION OF THE S- NITROSO-COENZYME A REDUCTASE AKR1A1 by COLIN T. STOMBERSKI Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Dissertation Advisor: Jonathan S. Stamler Department of Biochemistry CASE WESTERN RESERVE UNIVERSITY May, 2019 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the dissertation of COLIN T. STOMBERSKI candidate for the degree of Doctor of Philosophy*. Committee Chair Focco van den Akker Committee Members Jonathan Stamler George Dubyak Mukesh Jain Hung-Ying Kao 03-22-2019 *We also certify that written approval has been obtained for any proprietary material contained therein TABLE OF CONTENTS Table of Contents ………………………………………………………………………… i List of Tables ……………………………………………………………………………. v List of Figures ………………………………………………………………………….. vi List of Abbreviations …………………………………………………………………… ix Acknowledgements …………………………………………………………………….. xi Abstract ………………………………………………………………………………….. 1 Foundation and Experimental Framework ……………………………………………….. 3 Chapter 1: Protein S-nitrosylation: Determinants of specificity and enzymatic regulation of S-nitrosothiol-based signaling …………………………………………….. 5 1.1 Introduction …………………………………………………………………. 6 1.2 S-nitrosothiol specificity …………………………………………………….. 8 1.2.1 Acid-base and hydrophobic motifs ……………………………… 9 1.2.2 Interaction with nitric oxide synthases ………………………….. 13 1.3 S-nitrosothiol stability and reactivity ……………………………………….. 15 1.3.1 RSNO bond chemistry ………………………………………….. 16 1.3.2 Protein SNO—thiol reaction bias ………………………………. 18 1.3.3 SNO sites do not overlap S-oxidation sites …………………….. 19 1.4 Enzymatic denitrosylation ………………………………………………….. 20 1.4.1 The thioredoxin system ………………………………………… 21 1.4.2 LMW-SNO reductases …………………………………………. 23 1.4.3 The GSNO reductase system …………………………………… 24 1.4.4 GSNOR in physiology and pathophysiology …………………… 26 i 1.4.5 The SNO-CoA reductase system ……………………………….. 31 1.5 Specificity in denitrosylation ……………………………………………….
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2012/0266329 A1 Mathur Et Al
    US 2012026.6329A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2012/0266329 A1 Mathur et al. (43) Pub. Date: Oct. 18, 2012 (54) NUCLEICACIDS AND PROTEINS AND CI2N 9/10 (2006.01) METHODS FOR MAKING AND USING THEMI CI2N 9/24 (2006.01) CI2N 9/02 (2006.01) (75) Inventors: Eric J. Mathur, Carlsbad, CA CI2N 9/06 (2006.01) (US); Cathy Chang, San Marcos, CI2P 2L/02 (2006.01) CA (US) CI2O I/04 (2006.01) CI2N 9/96 (2006.01) (73) Assignee: BP Corporation North America CI2N 5/82 (2006.01) Inc., Houston, TX (US) CI2N 15/53 (2006.01) CI2N IS/54 (2006.01) CI2N 15/57 2006.O1 (22) Filed: Feb. 20, 2012 CI2N IS/60 308: Related U.S. Application Data EN f :08: (62) Division of application No. 1 1/817,403, filed on May AOIH 5/00 (2006.01) 7, 2008, now Pat. No. 8,119,385, filed as application AOIH 5/10 (2006.01) No. PCT/US2006/007642 on Mar. 3, 2006. C07K I4/00 (2006.01) CI2N IS/II (2006.01) (60) Provisional application No. 60/658,984, filed on Mar. AOIH I/06 (2006.01) 4, 2005. CI2N 15/63 (2006.01) Publication Classification (52) U.S. Cl. ................... 800/293; 435/320.1; 435/252.3: 435/325; 435/254.11: 435/254.2:435/348; (51) Int. Cl. 435/419; 435/195; 435/196; 435/198: 435/233; CI2N 15/52 (2006.01) 435/201:435/232; 435/208; 435/227; 435/193; CI2N 15/85 (2006.01) 435/200; 435/189: 435/191: 435/69.1; 435/34; CI2N 5/86 (2006.01) 435/188:536/23.2; 435/468; 800/298; 800/320; CI2N 15/867 (2006.01) 800/317.2: 800/317.4: 800/320.3: 800/306; CI2N 5/864 (2006.01) 800/312 800/320.2: 800/317.3; 800/322; CI2N 5/8 (2006.01) 800/320.1; 530/350, 536/23.1: 800/278; 800/294 CI2N I/2 (2006.01) CI2N 5/10 (2006.01) (57) ABSTRACT CI2N L/15 (2006.01) CI2N I/19 (2006.01) The invention provides polypeptides, including enzymes, CI2N 9/14 (2006.01) structural proteins and binding proteins, polynucleotides CI2N 9/16 (2006.01) encoding these polypeptides, and methods of making and CI2N 9/20 (2006.01) using these polynucleotides and polypeptides.
    [Show full text]
  • All Enzymes in BRENDA™ the Comprehensive Enzyme Information System
    All enzymes in BRENDA™ The Comprehensive Enzyme Information System http://www.brenda-enzymes.org/index.php4?page=information/all_enzymes.php4 1.1.1.1 alcohol dehydrogenase 1.1.1.B1 D-arabitol-phosphate dehydrogenase 1.1.1.2 alcohol dehydrogenase (NADP+) 1.1.1.B3 (S)-specific secondary alcohol dehydrogenase 1.1.1.3 homoserine dehydrogenase 1.1.1.B4 (R)-specific secondary alcohol dehydrogenase 1.1.1.4 (R,R)-butanediol dehydrogenase 1.1.1.5 acetoin dehydrogenase 1.1.1.B5 NADP-retinol dehydrogenase 1.1.1.6 glycerol dehydrogenase 1.1.1.7 propanediol-phosphate dehydrogenase 1.1.1.8 glycerol-3-phosphate dehydrogenase (NAD+) 1.1.1.9 D-xylulose reductase 1.1.1.10 L-xylulose reductase 1.1.1.11 D-arabinitol 4-dehydrogenase 1.1.1.12 L-arabinitol 4-dehydrogenase 1.1.1.13 L-arabinitol 2-dehydrogenase 1.1.1.14 L-iditol 2-dehydrogenase 1.1.1.15 D-iditol 2-dehydrogenase 1.1.1.16 galactitol 2-dehydrogenase 1.1.1.17 mannitol-1-phosphate 5-dehydrogenase 1.1.1.18 inositol 2-dehydrogenase 1.1.1.19 glucuronate reductase 1.1.1.20 glucuronolactone reductase 1.1.1.21 aldehyde reductase 1.1.1.22 UDP-glucose 6-dehydrogenase 1.1.1.23 histidinol dehydrogenase 1.1.1.24 quinate dehydrogenase 1.1.1.25 shikimate dehydrogenase 1.1.1.26 glyoxylate reductase 1.1.1.27 L-lactate dehydrogenase 1.1.1.28 D-lactate dehydrogenase 1.1.1.29 glycerate dehydrogenase 1.1.1.30 3-hydroxybutyrate dehydrogenase 1.1.1.31 3-hydroxyisobutyrate dehydrogenase 1.1.1.32 mevaldate reductase 1.1.1.33 mevaldate reductase (NADPH) 1.1.1.34 hydroxymethylglutaryl-CoA reductase (NADPH) 1.1.1.35 3-hydroxyacyl-CoA
    [Show full text]
  • Studies of the Thioredoxin System in Redox Signaling and Oxidative Stress
    From the Department of Medical Biochemistry & Biophysics Division of Biochemistry Karolinska Institutet, Stockholm, Sweden STUDIES OF THE THIOREDOXIN SYSTEM IN REDOX SIGNALING AND OXIDATIVE STRESS Belén Espinosa Fernández Stockholm 2020 Front Cover Image: “Muchacha escribiendo la tesis en tiempos de Coronavirus”/ “Young woman writing the thesis in time of Coronavirus” by Mauro Agró All previously published papers were reproduced with permission from the publisher. Published by Karolinska Institutet. Printed by Arkitektkopia AB, 2020 © Belén Espinosa Fernández, 2020 ISBN 978-91-7831-824-7 Studies of the thioredoxin system in redox signaling and oxidative stress THESIS FOR DOCTORAL DEGREE (Ph.D.) The thesis will be defended at Jacob Berzelius Hall, Karolinska Institutet Solna Friday, May 29th, 2020, 9 am. By Belén Espinosa Fernández Principal Supervisor: Opponent: Professor Elias S.J. Arnér Professor C. Alicia Padilla Peña Karolinska Institutet Universidad de Córdoba Department of Medical Biochemistry Department of Biochemistry & Biophysics & Molecular Biology Division of Biochemistry Examination Board: Co-supervisors: Professor Anna-Liisa Levonen Professor Stig Linder University of Eastern Finland Linköping University A.I. Virtanen Institute for Molecular Department of Biomedical and Sciences Clinical Sciences Division of Division of Professor Martin Bergö Drug Research Karolinska Institutet Department of Department of Biosciences and Nutrition Professor Gunter Schneider Karolinska Institutet Department of Department Medical Biochemistry and Biophysics Division of Molecular Structural Biology To my family, friends and every single person that helped me out until the last full stop La investigación puede ser muy frustrante. La investigación no entiende de horarios, no le importa si es domingo, festivo, o si se casa tu prima la del pueblo.
    [Show full text]