(Paracryphiaceae) Monotypic, Arborescent, Dicotyledonous Plant
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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
ACTINIDIACEAE 1. ACTINIDIA Lindley, Nat. Syst. Bot., Ed. 2, 439
ACTINIDIACEAE 猕猴桃科 mi hou tao ke Li Jianqiang (李建强)1, Li Xinwei (李新伟)1; Djaja Djendoel Soejarto2 Trees, shrubs, or woody vines. Leaves alternate, simple, shortly or long petiolate, not stipulate. Flowers bisexual or unisexual or plants polygamous or functionally dioecious, usually fascicled, cymose, or paniculate. Sepals (2 or 3 or)5, imbricate, rarely valvate. Petals (4 or)5, sometimes more, imbricate. Stamens 10 to numerous, distinct or adnate to base of petals, hypogynous; anthers 2- celled, versatile, dehiscing by apical pores or longitudinally. Ovary superior, disk absent, locules and carpels 3–5 or more; placentation axile; ovules anatropous with a single integument, 10 or more per locule; styles as many as carpels, distinct or connate (then only one style), generally persistent. Fruit a berry or leathery capsule. Seeds not arillate, with usually large embryos and abundant endosperm. Three genera and ca. 357 species: Asia and the Americas; three genera (one endemic) and 66 species (52 endemic) in China. Economically, kiwifruit (Actinidia chinensis var. deliciosa) is an important fruit, which originated in central China and is especially common along the Yangtze River (well known as yang-tao). Now, it is widely cultivated throughout the world. For additional information see the paper by X. W. Li, J. Q. Li, and D. D. Soejarto (Acta Phytotax. Sin. 45: 633–660. 2007). Liang Chou-fen, Chen Yong-chang & Wang Yu-sheng. 1984. Actinidiaceae (excluding Sladenia). In: Feng Kuo-mei, ed., Fl. Reipubl. Popularis Sin. 49(2): 195–301, 309–334. 1a. Trees or shrubs; flowers bisexual or plants functionally dioecious .................................................................................. 3. Saurauia 1b. -
Pieter Baas Retires
BLUMEA 50: 413– 424 Published on 14 December 2005 http://dx.doi.org/10.3767/000651905X622662 PIETER BAAS RETIRES Pieter Baas retired this year on 1 April from his position as Professor of Systematic Botany at Leiden University and on 1 September as Director of the Nationaal Herbarium Nederland (NHN)1. On 11 October 2005 he presented his valedictory lecture to the academic community and the assembled Dutch systematic and biodiversity world. On that occasion a well-deserved Royal Decoration (Knight in the Order of the Lion of the Netherlands) was bestowed on him to acknowledge his many outstanding services. We wholeheartedly congratulate him with this high distinction. The same day some 250 people joined his farewell party. Some of Pieter’s idiosyncrasies and qualities were highlighted in a very humorous series of sketches and songs by members of the NHN staff. Pieter Baas was born on 28 April 1944. He studied Biology at Leiden University from 1962 until 1969. Pieter started his career at the RH on 1 August 1969, after a year at the Jodrell Laboratory (Royal Botanic Gardens Kew) sponsored by a British Council Scholarship. He was appointed to build and curate wood and microscopic slide collec- tions and to carry out comparative anatomical research. His research concentrated on the wood and leaf anatomy of the Aquifoliaceae and later of the Icacinaceae, Celastraceae, Oleaceae, and several other families, and was not geographically restricted to Malesia. His prime objectives focused on the phylogenetic and ecological significance of wood anatomical characters. In the early years he also was involved in teaching anatomi- cal BSc-courses in the Biology curriculum of Leiden University. -
Phylogenetic Relationships in the Order Ericales S.L.: Analyses of Molecular Data from Five Genes from the Plastid and Mitochondrial Genomes1
American Journal of Botany 89(4): 677±687. 2002. PHYLOGENETIC RELATIONSHIPS IN THE ORDER ERICALES S.L.: ANALYSES OF MOLECULAR DATA FROM FIVE GENES FROM THE PLASTID AND MITOCHONDRIAL GENOMES1 ARNE A. ANDERBERG,2,5 CATARINA RYDIN,3 AND MARI KAÈ LLERSJOÈ 4 2Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden; 3Department of Systematic Botany, University of Stockholm, SE-106 91 Stockholm, Sweden; and 4Laboratory for Molecular Systematics, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden Phylogenetic interrelationships in the enlarged order Ericales were investigated by jackknife analysis of a combination of DNA sequences from the plastid genes rbcL, ndhF, atpB, and the mitochondrial genes atp1 and matR. Several well-supported groups were identi®ed, but neither a combination of all gene sequences nor any one alone fully resolved the relationships between all major clades in Ericales. All investigated families except Theaceae were found to be monophyletic. Four families, Marcgraviaceae, Balsaminaceae, Pellicieraceae, and Tetrameristaceae form a monophyletic group that is the sister of the remaining families. On the next higher level, Fouquieriaceae and Polemoniaceae form a clade that is sister to the majority of families that form a group with eight supported clades between which the interrelationships are unresolved: Theaceae-Ternstroemioideae with Ficalhoa, Sladenia, and Pentaphylacaceae; Theaceae-Theoideae; Ebenaceae and Lissocarpaceae; Symplocaceae; Maesaceae, Theophrastaceae, Primulaceae, and Myrsinaceae; Styr- acaceae and Diapensiaceae; Lecythidaceae and Sapotaceae; Actinidiaceae, Roridulaceae, Sarraceniaceae, Clethraceae, Cyrillaceae, and Ericaceae. Key words: atpB; atp1; cladistics; DNA; Ericales; jackknife; matR; ndhF; phylogeny; rbcL. Understanding of phylogenetic relationships among angio- was available for them at the time, viz. -
Saurauia (Actinidiaceae) of New Guinea: Current Status, Future Plans
Gardens’ Bulletin Singapore 63(1 & 2): 77–82. 2011 77 Saurauia (Actinidiaceae) of New Guinea: current status, future plans Marie Briggs Herbarium, Library, Art and Archives, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, U.K. [email protected] ABSTRACT. Saurauia, with approximately 300 species, is the largest of three genera within the family Actinidiaceae and is found in the tropical and sub-tropical regions of Asia, Central and South America. The family placement of the genus has changed several times, at times being placed in Ternstroemiaceae, Dilleniaceae and its own family, Saurauiaceae. The island of New Guinea may be a centre of diversity for Saurauia in South East Asia with more than 50 species. No comprehensive treatment of New Guinean Saurauia has been attempted since the work of Diels in 1922, despite complaints by later researchers that this publication is out of date and the subdivisions of the genus proposed therein are unsatisfactory. A full account of the family, including Saurauia, has yet to be covered in Flora Malesiana. This paper presents an introduction to the genus Saurauia in New Guinea and communicates plans for future research. Keywords. Actinidiaceae, New Guinea, Saurauia The family Actinidiaceae The family Actinidiaceae Gilg & Werdermann contains c. 355 species within three genera—Actinidia Lindl. (which includes the kiwi-fruit, c. 30 species), Saurauia Willd. (c. 300 species) and Clematoclethra (Franch.) Maxim. (c. 25 species). The family occurs in tropical and subtropical Central America, South America and South East Asia and also in temperate Asia and northern Australia (Heywood 2007). According to the Angiosperm Phylogeny Group (APG) 3 (Stevens 2001 onwards), Actinidiaceae sits in the order Ericales as a sister group to the families Roridulaceae and Sarraceniaceae. -
ON the LEAVES of Saurauia Roxburghii
PHYTOCHEMICAL AND BIOLOGICAL INVESTIGATION ON THE LEAVES OF Saurauia roxburghii A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENT FOR THE DEGREE OF MASTERS OF PHILOSOPHY (M. PHIL.) IN CHEMISTRY SUBMTTED BY YUNUS AHMED STUDENT NO. : 040803101F REGISTRATION NO. : 040803101 SESSON: APRIL-2008 ORGANIC RESEARCH LABORATORY DEPARTMENT OF CHEMISTRY BANGLADESH UNIVERSITY OF ENGINEERING AND TECHNOLOGY (BUET), DHAKA-1000, BANGLADESH JANUARY, 2012 PHYTOCHEMICAL AND BIOLOGICAL INVESTIGATION ON THE LEAVES OF Saurauia roxburghii A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENT FOR THE DEGREE OF MASTERS OF PHILOSOPHY (M. PHIL.) IN CHEMISTRY SUBMTTED BY YUNUS AHMED STUDENT NO. : 040803101F REGISTRATION NO. : 040803101 SESSON: APRIL-2008 ORGANIC RESEARCH LABORATORY DEPARTMENT OF CHEMISTRY BANGLADESH UNIVERSITY OF ENGINEERING AND TECHNOLOGY (BUET), DHAKA-1000, BANGLADESH JANUARY, 2012 BANGLADESH UNIVERSITY OF ENGINEERING AND TECHNOLOGY, DHAKA-1000, BANGLADESH DEPARTMENT OF CHEMISTRY THESIS ACCEPTANCE LETTER This thesis titled PHYTOCHEMICAL AND BIOLOGICAL INVESTIGATION ON THE LEAVES OF Saurauia roxburghii submitted by Yunus Ahmed, Roll No. 040803101F and Session-April 2008 has been accepted as satisfactory in partial fulfillment of the requirement for the degree of Masters of Philosophy (M.Phil) on 08 January 2012. Board of Examiners 1. Dr. Shakila Rahman Professor _________________________ Department of Chemistry, Chairman BUET, Dhaka (Supervisor) 2. Prof. Dr. Shakila Rahman Head _________________________ Department of Chemistry, Member (Ex-Officio) BUET, Dhaka 3. Dr. Md. Abdur Rashid Professor _________________________ Department of Chemistry, Member BUET, Dhaka 4. Dr. Md. Wahab Khan Professor _________________________ Department of Chemistry, Member BUET, Dhaka 5. Dr. S. M. Mizanur Rahman Professor _________________________ Department of Chemistry Member (External) University of Dhaka, Dhaka CONTENTS i CONTENTS Abstract I-II PART-ONE (Chemical Section) Chapter 1: INTRODUCTION Topics Page No. -
Fruit Evolution and Diversification in Campanulid Angiosperms
ORIGINAL ARTICLE doi:10.1111/evo.12180 FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS Jeremy M. Beaulieu1,2 and Michael J. Donoghue1 1Department of Ecology and Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, Connecticut 10620 2E-mail: [email protected] Received January 28, 2013 Accepted May 30, 2013 Data Archived: Dryad doi: 10.5061/dryad.vb850 With increases in both the size and scope of phylogenetic trees, we are afforded a renewed opportunity to address long-standing comparative questions, such as whether particular fruit characters account for much of the variation in diversity among flowering plant clades. Studies to date have reported conflicting results, largely as a consequence of taxonomic scale and a reliance on potentially conservative statistical measures. Here we examine a larger and older angiosperm clade, the Campanulidae, and infer the rates of character transitions among the major fruit types, emphasizing the evolution of the achene fruits that are most frequently observed within the group. Our analyses imply that campanulids likely originated bearing capsules, and that all subsequent fruit diversity was derived from various modifications of this dry fruit type. We also found that the preponderance of lineages bearing achenes is a consequence of not only being a fruit type that is somewhat irreversible once it evolves, but one that also seems to have a positive association with diversification rates. Although these results imply the achene fruit type is a significant correlate of diversity patterns observed across campanulids, we conclude that it remains difficult to confidently and directly view this character state as the actual cause of increased diversification rates. -
Vegetation Change During Recovery of Shifting Cultivation (Jhum) Fallows in a Subtropical Evergreen Forest Ecosystem of North- Eastern India
Vegetation Change During Recovery of Shifting Cultivation (Jhum) Fallows in a Subtropical Evergreen Forest Ecosystem of North- Eastern India R.S. Tripathi1, S.D. Prabhu2, H.N. Pandey3 and S.K. Barik3,4* 1CSIR-National Botanical Research Institute, Lucknow-226001, INDIA; 2Bombay Natural History Society, Shaheed Bhagat Singh Road, Mumbai-400001, INDIA; 3Department of Botany, North-Eastern Hill University, Shillong- 793022, INDIA; 4Present address: Department of Botany, University of Delhi, Delhi-110007, INDIA *Corresponding Author: Prof. S.K. Barik, Department of Botany, North-Eastern Hill University, Shillong-793022, India, Fax: +91 364 2550108, Email: [email protected] Abstract An understanding of vegetation change on jhum fallows undergoing recovery following shifting cultivation is vital for developing a rehabilitation strategy for shifting cultivation areas. However, the pattern of vegetation change during the recovery of shifting cultivation fallows is not well-studied. Therefore, the present study was carried out in a subtropical forest ecosystem in the buffer zone of Nokrek Biosphere Reserve in north-eastern India where shifting cultivation is being practiced extensively. The species composition and other plant community attributes were studied in 1-year, 3-year, 6-year and 12-year old shifting cultivation (jhum) fallows and were compared with an undisturbed forest in the adjoining core zone of the Biosphere Reserve. The rate of recovery of various community attributes such as species dominance and diversity, tree species population structure, stratification and life form spectrum was, in general, slow. The young fallows exhibited high dominance and low equitably which slowly progressed towards high equitability as recovery progressed with increasing age of the fallows. -
Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa
Systematic Botany (2010), 35(2): pp. 425–441 © Copyright 2010 by the American Society of Plant Taxonomists Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa David C. Tank 1,2,3 and Michael J. Donoghue 1 1 Peabody Museum of Natural History & Department of Ecology & Evolutionary Biology, Yale University, P. O. Box 208106, New Haven, Connecticut 06520 U. S. A. 2 Department of Forest Resources & Stillinger Herbarium, College of Natural Resources, University of Idaho, P. O. Box 441133, Moscow, Idaho 83844-1133 U. S. A. 3 Author for correspondence ( [email protected] ) Communicating Editor: Javier Francisco-Ortega Abstract— Previous attempts to resolve relationships among the primary lineages of Campanulidae (e.g. Apiales, Asterales, Dipsacales) have mostly been unconvincing, and the placement of a number of smaller groups (e.g. Bruniaceae, Columelliaceae, Escalloniaceae) remains uncertain. Here we build on a recent analysis of an incomplete data set that was assembled from the literature for a set of 50 campanulid taxa. To this data set we first added newly generated DNA sequence data for the same set of genes and taxa. Second, we sequenced three additional cpDNA coding regions (ca. 8,000 bp) for the same set of 50 campanulid taxa. Finally, we assembled the most comprehensive sample of cam- panulid diversity to date, including ca. 17,000 bp of cpDNA for 122 campanulid taxa and five outgroups. Simply filling in missing data in the 50-taxon data set (rendering it 94% complete) resulted in a topology that was similar to earlier studies, but with little additional resolution or confidence. -
Supplementary Information
Supporting Information for Cornwell et al. 2014. Functional distinctiveness of major 1 plant lineages. doi: 10.1111/1365-2745.12208. SUPPORTING INFORMATION Summary In this Supporting Information, we report additional methods details with respect to the trait data, the climate data, and the analysis. In addition, to more fully explain the method, we include several additional figures. We show the top-five lineages, including the population of lineages from which they were selected, for five important traits (Figure S1 on five separate pages); the bivariate distribution of three selected clades with respect to SLA and leaf N, components of the leaf economic spectrum (Figure S2), the geographic distribution of the clades where this proved useful for interpretation (Figure S3); the procedure for selecting the top six nodes in the leaf N trait, to illustrate the internal behavior of our new comparative method, especially the relative contribution of components of extremeness and the sample size weighting to the results (Figure S4). Finally, we provide references for data used in analyses. SUPPORTING METHODS TRAITS DATABASE We compiled a database for five plant functional traits. Each of these traits is the result of a separate research initiative in which data were gathered directly from researchers leading those efforts and/or the literature; in most, but not all cases, these data have been published elsewhere. Detailed methods for data collection and assembly for each trait are available in the original publications; further data were added for some traits from the primary literature (for references see description of individual traits and Supporting References below). For our compilation, all data were brought to common units for a given trait and thoroughly error checked. -
Phylogenetics of Asterids Based on 3 Coding and 3 Non-Coding Chloroplast DNA Markers and the Utility of Non-Coding DNA at Higher Taxonomic Levels
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 24 (2002) 274–301 www.academicpress.com Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels Birgitta Bremer,a,e,* Kaare Bremer,a Nahid Heidari,a Per Erixon,a Richard G. Olmstead,b Arne A. Anderberg,c Mari Kaallersj€ oo,€ d and Edit Barkhordariana a Department of Systematic Botany, Evolutionary Biology Centre, Norbyva€gen 18D, SE-752 36 Uppsala, Sweden b Department of Botany, University of Washington, P.O. Box 355325, Seattle, WA, USA c Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden d Laboratory for Molecular Systematics, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden e The Bergius Foundation at the Royal Swedish Academy of Sciences, P.O. Box 50017, SE-104 05 Stockholm, Sweden Received 25 September 2001; received in revised form 4 February 2002 Abstract Asterids comprise 1/4–1/3 of all flowering plants and are classified in 10 orders and >100 families. The phylogeny of asterids is here explored with jackknife parsimony analysis of chloroplast DNA from 132 genera representing 103 families and all higher groups of asterids. Six different markers were used, three of the markers represent protein coding genes, rbcL, ndhF, and matK, and three other represent non-coding DNA; a region including trnL exons and the intron and intergenic spacers between trnT (UGU) to trnF (GAA); another region including trnV exons and intron, trnM and intergenic spacers between trnV (UAC) and atpE, and the rps16 intron.