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Fruit Evolution and Diversification in Campanulid Angiosperms
ORIGINAL ARTICLE doi:10.1111/evo.12180 FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS Jeremy M. Beaulieu1,2 and Michael J. Donoghue1 1Department of Ecology and Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, Connecticut 10620 2E-mail: [email protected] Received January 28, 2013 Accepted May 30, 2013 Data Archived: Dryad doi: 10.5061/dryad.vb850 With increases in both the size and scope of phylogenetic trees, we are afforded a renewed opportunity to address long-standing comparative questions, such as whether particular fruit characters account for much of the variation in diversity among flowering plant clades. Studies to date have reported conflicting results, largely as a consequence of taxonomic scale and a reliance on potentially conservative statistical measures. Here we examine a larger and older angiosperm clade, the Campanulidae, and infer the rates of character transitions among the major fruit types, emphasizing the evolution of the achene fruits that are most frequently observed within the group. Our analyses imply that campanulids likely originated bearing capsules, and that all subsequent fruit diversity was derived from various modifications of this dry fruit type. We also found that the preponderance of lineages bearing achenes is a consequence of not only being a fruit type that is somewhat irreversible once it evolves, but one that also seems to have a positive association with diversification rates. Although these results imply the achene fruit type is a significant correlate of diversity patterns observed across campanulids, we conclude that it remains difficult to confidently and directly view this character state as the actual cause of increased diversification rates. -
Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa
Systematic Botany (2010), 35(2): pp. 425–441 © Copyright 2010 by the American Society of Plant Taxonomists Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa David C. Tank 1,2,3 and Michael J. Donoghue 1 1 Peabody Museum of Natural History & Department of Ecology & Evolutionary Biology, Yale University, P. O. Box 208106, New Haven, Connecticut 06520 U. S. A. 2 Department of Forest Resources & Stillinger Herbarium, College of Natural Resources, University of Idaho, P. O. Box 441133, Moscow, Idaho 83844-1133 U. S. A. 3 Author for correspondence ( [email protected] ) Communicating Editor: Javier Francisco-Ortega Abstract— Previous attempts to resolve relationships among the primary lineages of Campanulidae (e.g. Apiales, Asterales, Dipsacales) have mostly been unconvincing, and the placement of a number of smaller groups (e.g. Bruniaceae, Columelliaceae, Escalloniaceae) remains uncertain. Here we build on a recent analysis of an incomplete data set that was assembled from the literature for a set of 50 campanulid taxa. To this data set we first added newly generated DNA sequence data for the same set of genes and taxa. Second, we sequenced three additional cpDNA coding regions (ca. 8,000 bp) for the same set of 50 campanulid taxa. Finally, we assembled the most comprehensive sample of cam- panulid diversity to date, including ca. 17,000 bp of cpDNA for 122 campanulid taxa and five outgroups. Simply filling in missing data in the 50-taxon data set (rendering it 94% complete) resulted in a topology that was similar to earlier studies, but with little additional resolution or confidence. -
Combretaceae: Phylogeny, Biogeography and DNA
COPYRIGHT AND CITATION CONSIDERATIONS FOR THIS THESIS/ DISSERTATION o Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. o NonCommercial — You may not use the material for commercial purposes. o ShareAlike — If you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original. How to cite this thesis Surname, Initial(s). (2012) Title of the thesis or dissertation. PhD. (Chemistry)/ M.Sc. (Physics)/ M.A. (Philosophy)/M.Com. (Finance) etc. [Unpublished]: University of Johannesburg. Retrieved from: https://ujdigispace.uj.ac.za (Accessed: Date). Combretaceae: Phylogeny, Biogeography and DNA Barcoding by JEPHRIS GERE THESIS Submitted in fulfilment of the requirements for the degree PHILOSOPHIAE DOCTOR in BOTANY in the Faculty of Science at the University of Johannesburg December 2013 Supervisor: Prof Michelle van der Bank Co-supervisor: Dr Olivier Maurin Declaration I declare that this thesis has been composed by me and the work contained within, unless otherwise stated, is my own. _____________________ J. Gere (December 2013) Table of contents Table of contents i Abstract v Foreword vii Index to figures ix Index to tables xv Acknowledgements xviii List of abbreviations xxi Chapter 1: General introduction and objectives 1.1 General introduction 1 1.2 Vegetative morphology 2 1.2.1 Leaf morphology and anatomy 2 1.2.2. Inflorescence 3 1.2.3 Fruit morphology 4 1.3 DNA barcoding 5 1.4 Cytology 6 1.5 Fossil record 7 1.6 Distribution and habitat 7 1.7 Economic Importance 8 1.8 Taxonomic history 9 1.9 Aims and objectives of the study 11 i Table of contents Chapter 2: Molecular phylogeny of Combretaceae with implications for infrageneric classification within subtribe Terminaliinae. -
Phylogenetics of Asterids Based on 3 Coding and 3 Non-Coding Chloroplast DNA Markers and the Utility of Non-Coding DNA at Higher Taxonomic Levels
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 24 (2002) 274–301 www.academicpress.com Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels Birgitta Bremer,a,e,* Kaare Bremer,a Nahid Heidari,a Per Erixon,a Richard G. Olmstead,b Arne A. Anderberg,c Mari Kaallersj€ oo,€ d and Edit Barkhordariana a Department of Systematic Botany, Evolutionary Biology Centre, Norbyva€gen 18D, SE-752 36 Uppsala, Sweden b Department of Botany, University of Washington, P.O. Box 355325, Seattle, WA, USA c Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden d Laboratory for Molecular Systematics, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden e The Bergius Foundation at the Royal Swedish Academy of Sciences, P.O. Box 50017, SE-104 05 Stockholm, Sweden Received 25 September 2001; received in revised form 4 February 2002 Abstract Asterids comprise 1/4–1/3 of all flowering plants and are classified in 10 orders and >100 families. The phylogeny of asterids is here explored with jackknife parsimony analysis of chloroplast DNA from 132 genera representing 103 families and all higher groups of asterids. Six different markers were used, three of the markers represent protein coding genes, rbcL, ndhF, and matK, and three other represent non-coding DNA; a region including trnL exons and the intron and intergenic spacers between trnT (UGU) to trnF (GAA); another region including trnV exons and intron, trnM and intergenic spacers between trnV (UAC) and atpE, and the rps16 intron. -
Phylogenetic Studies in the Euasterids II
Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 676 _____________________________ _____________________________ Phylogenetic Studies in the Euasterids II with Particular Reference to Asterales and Escalloniaceae BY JOHANNES LUNDBERG ACTA UNIVERSITATIS UPSALIENSIS UPPSALA 2001 Dissertation for the Degree of Doctor of Philosophy in Systematic Botany presented at Uppsala University in 2002 Abstract Lundberg, J. 2001. Phylogenetic studies in the Euasterids II with particular reference to Asterales and Escalloniaceae. Acta Univ. Ups. Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 676. 38 pp. Uppsala. ISBN 91-554-5191-8. The present study is concerned with the evolutionary relationships among the Euasterids II, a group of angiosperms that includes the orders Apiales, Aquifoliales, Asterales, and Dipsacales together with several small, poorly known families yet unplaced as to order. Parsimony analysis of nucleotide sequence data from the chloroplast genes atpB, ndhF and rbcL together with morphological data are used to construct a phylogeny of the order Asterales, which in the present sense includes 11 families and more than 26 000 species. It is argued that Rousseaceae should be expanded to include also Carpodetaceae (and thus contain four genera), and that Donatia should be re-merged with Stylidiaceae. The present study also strongly supports that the sister taxon to the largest plant family, Asteraceae (Compositae), is the small South American Calyceraceae. A new addition to Asterales is Platyspermation (formerly in Escalloniaceae). Using the recently developed Bayesian approach to phylogenetic reconstruction, in combination with a dataset consisting of the atpB, ndhF and rbcL nucleotide sequences, a resolved and fairly well supported phylogeny of the Euasterids II was reconstructed. -
“Primitive” Wood Characters Are Adaptive: Examples from Paracryphiaceae Sherwin Carlquist Santa Barbara Botanic Garden, Santa Barbara, California
Aliso: A Journal of Systematic and Evolutionary Botany Volume 36 | Issue 1 Article 2 2018 “Primitive” Wood Characters are Adaptive: Examples from Paracryphiaceae Sherwin Carlquist Santa Barbara Botanic Garden, Santa Barbara, California Follow this and additional works at: https://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Carlquist, Sherwin (2018) "“Primitive” Wood Characters are Adaptive: Examples from Paracryphiaceae," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 36: Iss. 1, Article 2. Available at: https://scholarship.claremont.edu/aliso/vol36/iss1/2 Aliso, 36(1), pp. 1–20 ISSN: 0065-6275 (print), 2327-2929 (online) “PRIMITIVE” WOOD CHARACTERS ARE ADAPTIVE: EXAMPLES FROM PARACRYPHIACEAE Sherwin Carlquist Santa Barbara Botanic Garden, 1212 Mission Canyon Road, Santa Barbara, California 93105 abstract Why plants rich in plesiomorphic (“primitive”) features are alive today is a question that receives little comment. Apomorphies in angiosperms are often interpreted as valuable adaptations. However, both apo- morphies and plesiomorphies can be keyed to ecological and physiological features. If a particular habitat remains little modified for long periods of geological time, plesiomorphic features should theoretically per- sist. The Bailey-Frost-Kribs correlations (usually between tracheary element length and character states in other wood features), deemed useful in their day, did not include adaptation to ecology, nor did they have the advantages that molecular-based phylogenies bring to us today. Montane cloud forests or cool wet forests in geologically older areas (New Zealand, New Caledonia, New Guinea, northern Queensland), especially closer to the equator, contain many species rich in wood plesiomorphies. Wood plesiomorphies can also occur in areas frozen in winter but with moderate transpiration rates during the growing season. -
Bremer Et Al. 2001
Plant Syst. Evol. 229: 137±169 <2001) A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data with notes on possible higher level morphological synapomorphies K. Bremer1, A. Backlund2, B. Sennblad3, U. Swenson4, K. Andreasen5, M. Hjertson1, J. Lundberg1, M. Backlund1, and B. Bremer1 1Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden 2Department of Medicinal Chemistry, Uppsala University, Uppsala, Sweden 3Stockholm Bioinformatics Center, Stockholm University, Stockholm, Sweden 4Department of Botany, University of Stockholm, Stockholm, Sweden 5Molecular Systematics Laboratory, Swedish Museum of Natural History, Stockholm, Sweden Received August 28, 2000 Accepted August 7, 2001 Abstract. A data matrix of 143 morphological and epigynous ¯owers, ``late sympetaly'' with distinct chemical characters for 142 genera of euasterids petal primordia, free stamen ®laments, and indehi- according to the APG system was compiled and scent fruits. It is unclear which of these characters complemented with rbcL and ndhF sequences for represent synapomorphies and symplesiomorphies most of the genera. The data were subjected to for the two groups, respectively, and there are parsimony analysis and support was assessed by numerous expections to be interpreted as reversals bootstrapping. Strict consensus trees from analyses and parallelisms. of morphology alone and morphology + rbcL+ ndhF are presented. The morphological data re- Key words: Angiosperms, asterids, euasterids, cover several groups supported by molecular data Asteridae, Apiales, Aquifoliales, Asterales, but at the level of orders and above relationships Dipsacales, Garryales, Gentianales, Lamiales, are only super®cially in agreement with molecular Solanales, Adoxaceae. Cladistics, phylogeny, studies. The analyses provide support for mono- morphology, rbcL, ndhF. -
The Middle Miocene Palynofloras of the Salihpaşalar Lignite Mine
Palaeobiodiversity and Palaeoenvironments https://doi.org/10.1007/s12549-018-0345-0 ORIGINAL PAPER The middle Miocene palynofloras of the Salihpaşalar lignite mine (Yatağan Basin, southwest Anatolia): environmental characterisation and comparison with palynofloras from adjacent basins Johannes M. Bouchal1,2 Received: 23 December 2017 /Revised: 23 March 2018 /Accepted: 29 May 2018 # The Author(s) 2018 Abstract As the third part of an ongoing investigation of middle Miocene palynofloras in the Yatağan Basin (YB), southwestern Anatolia, the palynofloras of the Salihpaşalar lignite mine in the main YB were studied. Seven types of algal spores, aplanospores/zygospores or cysts, six types of lycophyte and fern spores, 12 types of gymnosperm pollen and 90 types of angiosperm pollen were identified. Of a total of ca. 140 plant taxa described from the YB, over 10% are confined to the Salihpaşalar assemblage. Differences between coeval palynofloras of the Sekköy Member might reflect changing or prograding depositional environments. A number of rare accessorial taxa reflect these local differences: Pilularia, Valeriana, Drosera and Persicaria aff. amphibia only occur at Salihpaşalar and are typical of shallow water or temporary ponds associated with a lake shore. Apart from this, all the palynofloras, originating from the lignite seams and overlying limnic limestones (uppermost Turgut and Sekköy Member), of the YB are strongly indicative of extensive woody vegetation with a dominance of diverse Fagaceae and Pinaceae. In addition, a list comparing the well-documented YB palynomorphs to morphologically similar palynomorphs of published late early to middle Miocene plant assemblages of western Anatolian was compiled. Such a comparison reveals that in many instances different taxon names have been used to denote the same taxa. -
The Leipzig Catalogue of Plants (LCVP) ‐ an Improved Taxonomic Reference List for All Known Vascular Plants
Freiberg et al: The Leipzig Catalogue of Plants (LCVP) ‐ An improved taxonomic reference list for all known vascular plants Supplementary file 3: Literature used to compile LCVP ordered by plant families 1 Acanthaceae AROLLA, RAJENDER GOUD; CHERUKUPALLI, NEERAJA; KHAREEDU, VENKATESWARA RAO; VUDEM, DASHAVANTHA REDDY (2015): DNA barcoding and haplotyping in different Species of Andrographis. In: Biochemical Systematics and Ecology 62, p. 91–97. DOI: 10.1016/j.bse.2015.08.001. BORG, AGNETA JULIA; MCDADE, LUCINDA A.; SCHÖNENBERGER, JÜRGEN (2008): Molecular Phylogenetics and morphological Evolution of Thunbergioideae (Acanthaceae). In: Taxon 57 (3), p. 811–822. DOI: 10.1002/tax.573012. CARINE, MARK A.; SCOTLAND, ROBERT W. (2002): Classification of Strobilanthinae (Acanthaceae): Trying to Classify the Unclassifiable? In: Taxon 51 (2), p. 259–279. DOI: 10.2307/1554926. CÔRTES, ANA LUIZA A.; DANIEL, THOMAS F.; RAPINI, ALESSANDRO (2016): Taxonomic Revision of the Genus Schaueria (Acanthaceae). In: Plant Systematics and Evolution 302 (7), p. 819–851. DOI: 10.1007/s00606-016-1301-y. CÔRTES, ANA LUIZA A.; RAPINI, ALESSANDRO; DANIEL, THOMAS F. (2015): The Tetramerium Lineage (Acanthaceae: Justicieae) does not support the Pleistocene Arc Hypothesis for South American seasonally dry Forests. In: American Journal of Botany 102 (6), p. 992–1007. DOI: 10.3732/ajb.1400558. DANIEL, THOMAS F.; MCDADE, LUCINDA A. (2014): Nelsonioideae (Lamiales: Acanthaceae): Revision of Genera and Catalog of Species. In: Aliso 32 (1), p. 1–45. DOI: 10.5642/aliso.20143201.02. EZCURRA, CECILIA (2002): El Género Justicia (Acanthaceae) en Sudamérica Austral. In: Annals of the Missouri Botanical Garden 89, p. 225–280. FISHER, AMANDA E.; MCDADE, LUCINDA A.; KIEL, CARRIE A.; KHOSHRAVESH, ROXANNE; JOHNSON, MELISSA A.; STATA, MATT ET AL. -
Progress and Problems in the Assessment of Flower Morphology In
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Plant Syst Evol (2012) 298:257–276 DOI 10.1007/s00606-011-0576-2 REVIEW Progress and problems in the assessment of flower morphology in higher-level systematics Peter K. Endress • Merran L. Matthews Received: 1 September 2011 / Accepted: 21 November 2011 / Published online: 7 January 2012 Ó Springer-Verlag 2012 Abstract Floral features used for characterization of Introduction higher-level angiosperm taxa (families, orders, and above) are assessed following a comparison of earlier (pre- Plant species, genera, families, orders, and even higher cladistic/premolecular) and current classifications. Cron- categories have long been characterized by structural fea- quist (An integrated system of classification of flowering tures, mainly by floral morphology. Certain features have plants. Columbia University Press, New York, 1981) and generally been regarded as of special value to characterize APG (Angiosperm Phylogeny Group) (Bot J Linn Soc higher-level taxa (families and above) in traditional clas- 161:105–121, 2009) were mainly used as the basis for this sifications, with the assumption that they are relatively comparison. Although current circumscriptions of taxo- stable. Earlier, classifications were developed whereby nomic groups (clades) are largely based on molecular larger primary groups were formed based upon shared markers, it is also important to morphologically charac- structural similarity. These groups then constituted the terize these new groups, as, in many cases, they are com- nuclei around which other groups were assembled by pletely novel assemblages, especially at the level of orders concatenation according to their least dissimilarity. -
Phylogenetic Analysis of the Lythraceae Based on Four Gene Regions and Morphology
Int. J. Plant Sci. 166(6):995–1017. 2005. Ó 2005 by The University of Chicago. All rights reserved. 1058-5893/2005/16606-0011$15.00 PHYLOGENETIC ANALYSIS OF THE LYTHRACEAE BASED ON FOUR GENE REGIONS AND MORPHOLOGY Shirley A. Graham,1,* Jocelyn Hall,y Kenneth Sytsma,y and Su-hua Shiz *Missouri Botanical Garden, P.O. Box 299, St. Louis, Missouri 63166-0299, U.S.A.; yDepartment of Botany, University of Wisconsin, Madison, Wisconsin 53706-1579, U.S.A.; and zState Key Laboratory of Biocontrol, School of Life Sciences, Zhongshan University, Guangzhou 510275, Guangdong, China The family limits of the Lythraceae and relationships among the ca. 31 genera remain poorly known in spite of previous phylogenetic studies. We use morphology and DNA sequences from the rbcL gene, the trnL-F re- gion, and psaA-ycf3 intergenic spacer of the chloroplast and the internal transcribed spacer region of the nu- cleus to explore relationships for up to 27 genera of the Lythraceae sensu stricto and the monogeneric families Duabangaceae, Punicaceae, Sonneratiaceae, and Trapaceae. Maximum parsimony, maximum likelihood, and Bayesian likelihood approaches are employed. Morphology alone provided little phylogenetic resolution. Results from individual gene regions were relatively well resolved and largely congruent, whereas basal rela- tionships were poorly supported. A combined gene analysis of 20 genera produced one fully resolved max- imum parsimony tree that corresponded closely to the maximum likelihood and Bayesian trees in which a monophyletic Lythraceae includes Duabanga, Punica, Sonneratia, and Trapa as derived genera within the family. Decodon is sister to the rest of the family in the maximum parsimony and Bayesian trees, followed by Lythrum and Peplis at the node above and then by the rest of the family, which diverges into two superclades. -
Systematics of Harrisia (Cactaceae) Alan R
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School January 2012 Systematics of Harrisia (Cactaceae) Alan R. Franck University of South Florida, [email protected] Follow this and additional works at: http://scholarcommons.usf.edu/etd Part of the American Studies Commons, Molecular Biology Commons, Plant Sciences Commons, and the Systems Biology Commons Scholar Commons Citation Franck, Alan R., "Systematics of Harrisia (Cactaceae)" (2012). Graduate Theses and Dissertations. http://scholarcommons.usf.edu/etd/4044 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Systematics of Harrisia (Cactaceae) by Alan R. Franck A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Cell Biology, Microbiology, and Molecular Biology College of Arts and Sciences University of South Florida Major Professor: James R. Garey, Ph.D. Bruce J. Cochrane, Ph.D. Diane Te Strake, M.A. Richard P. Wunderlin, Ph.D. Date of Approval: 8 June 2012 Keywords: biogeography, monograph, nomenclature, phylogeny, taxonomy Copyright © 2012, Alan R. Franck DEDICATION This work is dedicated to several supportive persons: Peggy L. Brandewie; Maurice Franck; Douglas D. Springer; Annette Franck; Thomas Brandewie; Andrew L. Franck and family; Melanie L. Chamberlain; Andrew Clark; Jeff Hobensack; Christopher Monday; Franck, Brown, Springer, Combs, Brandewie, and Chamberlain families; Kris Sutter and Shawn Moorman; Matt Weigel; J. J. Oakleaf; Gene Russell Rann and Dave Catalfino; and friends.