The Mitogenome of a Malagasy Butterfly Malaza Fastuosus (Mabille
Total Page：16
File Type：pdf, Size：1020Kb
Title The mitogenome of a Malagasy butterfly Malaza fastuosus (Mabille, 1884) recovered from the holotype collected over 140 years ago adds support for a new subfamily of Hesperiidae (Lepidoptera) Authors Zhang, J; Lees, David; Shen, J; Cong, Q; Huertas, B; Martin, G; Grishin, NV 195 ARTICLE The mitogenome of a Malagasy butterfly Malaza fastuosus (Mabille, 1884) recovered from the holotype collected over 140 years ago adds support for a new subfamily of Hesperiidae (Lepidoptera) Jing Zhang, David C. Lees, Jinhui Shen, Qian Cong, Blanca Huertas, Geoff Martin, and Nick V. Grishin Abstract: Malaza fastuosus is a lavishly patterned skipper butterfly from a genus that has three described species, all endemic to the mainland of Madagascar. To our knowledge, M. fastuosus has not been collected for nearly 50 years. To evaluate the power of our techniques to recover DNA, we used a single foreleg of an at least 140-year-old holotype specimen from the collection of the Natural History Museum London with no destruction of external morphology to extract DNA and assemble a complete mitogenome from next generation sequencing reads. The resulting 15 540 bp mitogenome contains 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and an A+T rich region, similarly to other Lepidoptera mitogenomes. Here we provide the first mitogenome also for Trapezitinae (Rachelia extrusus). Phylogenetic analysis of available skipper mitogenomes places Malaza outside of Trapezitinae and Barcinae + Hesperiinae, with a possible sister relationship to Heteropterinae. Of these, at least Heteropterinae, Trape- zitinae, and almost all Hesperiinae have monocot-feeding caterpillars. Malaza appears to be an evolutionarily highly distinct ancient lineage, morphologically with several unusual hesperiid features. The monotypic subfamily Malazinae Lees & Grishin subfam. nov. (type genus Malaza) is proposed to reflect this morphological and molecular evidence. Key words: next-generation sequencing, phylogeny, Madagascar, ancient DNA, Paul Mabille. Résumé : Le Malaza fastuosus est une espèce de papillon aux motifs très colorés qui appartient à un genre qui compte trois espèces décrites, toutes indigènes de Madagascar. Au meilleur de la connaissance des auteurs, aucun spécimen du M. fastuosus n’a été collecté depuis près de 50 ans. Pour évaluer la puissance des techniques d’extraction d’ADN, les For personal use only. auteurs ont employé une seule patte avant sur un spécimen holotype vieux d’au moins 140 ans, conservé au sein de la collection du Natural History Museum London et qui ne présentait aucun signe morphologique de dommage extérieur, pour extraire de l’ADN et assembler un mitogénome complet à l’aide de séquençage de seconde génération. Le mitogénome obtenu compte 15 540 pb et contient 13 gènes codant pour des protéines, 22 gènes d’ARN de transfert, deux gènes codant pour des ARN ribosomiques et une région riche en A+T, tout comme les autres mitogénomes de lépidoptères. Les auteurs rapportent également le premier mitogénome au sein des Trapezitinae (Rachelia extrusus). Une analyse phylogénétique parmi les autres mitogénomes d’hespéridés place le genre Malaza à l’extérieur des Trapezitinae et Barcinae + Hesperiinae, mais avec une possible relation proche avec les Heterop- terinae. Parmi celles-ci, les Heteropterinae, les Trapezitinae et presque tous les Hesperiinae présentent des che- nilles qui se nourrissent de monocotylédones. Le genre Malaza semble former un groupe distinct et ancien sur le plan évolutif, mais qui présente plusieurs caractéristiques morphologiques inhabituelles présentes chez les Hes- periidae. Une sous-famille monotypique, Malazinae Lees & Grishin (genre type Malaza) est proposé pour refléter Genome Downloaded from www.nrcresearchpress.com by Nick V. Grishin on 03/06/20 les évidences morphologiques et moléculaires. [Traduit par la Rédaction] Mots-clés : séquençage de seconde génération, phylogénie, Madagascar, ADN ancient, Paul Mabille. Received 8 November 2019. Accepted 8 January 2020. J. Zhang* and J. Shen. Departments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-8816, USA. D.C. Lees,* B. Huertas, and G. Martin. Department of Life Sciences, Natural History Museum, London, SW7 5BD, United Kingdom. Q. Cong. Institute for Protein Design and Department of Biochemistry, University of Washington, 1959 NE Pacific Street, HSB J-405, Seattle, WA 98195, USA. N.V. Grishin. Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9050, USA; Departments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-8816, USA. Corresponding author: Nick V. Grishin (email: [email protected]). *These authors contributed equally to this work. Copyright remains with the author(s) or their institution(s). Permission for reuse (free in most cases) can be obtained from RightsLink. Genome 63: 195–202 (2020) dx.doi.org/10.1139/gen-2019-0189 Published at www.nrcresearchpress.com/gen on 6 March 2020. 196 Genome Vol. 63, 2020 Introduction round and glimmering white spangles tinted with yel- Its name translated from Malagasy as “famous”, Malaza low, whereas M. empyreus has three orange spots embed- Mabille, 1904 is probably the most unusual skipper genus ded in a similar vermilion-red. Malaza carmides is less from Madagascar. Three Malagasy endemic species of Malaza spectacular but sexually dimorphic, the female sporting have been described (Lees et al. 2003). One of them, aptly a single silver spangle on the ventral hindwing under- named Malaza fastuosus (Mabille, 1884), here dubbed Lavish side. Malaza, has not been collected to our knowledge for nearly Nothing is recorded about the habits of M. fastuosus, 50 years. The study specimen (Fig. 1; whose sex Paul but it has been collected widely, from north, west, east, and Mabille was unsure of: Mabille [1887]: 338), is a female, as southwest Madagascar (forêt d’Analalava, Ankarafantsika, ascertained by lack of androconial scale brushes on its Perinet, Ile Ste Marie, Fito, Forêt de Rogez, Imerimandroso ventral forewing and dorsal hindwing. Its taxonomic his- Lac Alaotra, and Tongobory; museum data and Viette (1956)), tory is somewhat complicated. It was first described by sites varying from 0 to 900 m elevation in dry to wet forests, Mabille in 1878 as his female syntype of Cyclopides empyreus from September to December. Surprisingly, it was last col- (Mabille 1878). Its type locality is no more precise than Mad- lected in Ankarafantsika in 1971, whereas M. empyreus is agascar and Mabille subsequently (re-)described this speci- occasionally collected or photographed in dense eastern men (Mabille 1884) as a distinct taxon, Trapezites fastuosus. rainforest interiors (Preston-Mafham 1991). Malaza carmides The latter specimen (NHMUK010621353) is considered to is found more often in littoral forest or scrub. It is probable be the holotype of T. fastuosus, and apart from its head that additional species remain to be described. Searches for and abdomen, is consistent in pattern with the illustra- ovipositions for any species have so far proved fruitless, but tion in pl. 13, figs. 9, 9a of Mabille ([1885]) (those parts excepting M. carmides, Malaza encounters during fieldwork were probably fabricated in this figure). This holotype is are rare and not easily predictable. found in the collection of the Natural History Museum in The systematics of Malaza is poorly understood. Evans London (NHMUK). Even at the time of its description (1937) placed Malaza in the first subgroup of his Ploetzia as T. fastuosus, the specimen was “à corps incomplet” group, apparently largely based on wing venation “hind- (Mabille 1884) or indeed “privé d’abdomen et de tête” wing lower outer angle of cell not turned up, i.e., the (Mabille [1887]). As Mabille says in the last publication that it median vein and vein 4 collinear” (an observation appar- was lacking its head and abdomen, it may be inferred very ently not based on a wing preparation of Malaza, see likely that the abdomen, currently attached with dark red Diagnosis). This group he considered contained also resin, is not the original one (it lacks an expected series of dark Miraja and Perrotia, two other genera endemic to Mada- ventro-lateral stripes, and is slightly larger than normal for gascar (see also Lees et al. 2003, where Miraja was sunk). Malaza carmides). The current wingspan measures just short An additional 12 Afrotropical genera were included in For personal use only. of 49 mm, but the tip of the left forewing is missing today. Evans' Ploetzia group. Viette (1956: 46–50) added a limited Mabille measured its wingspan at 52 mm in 1878 and morphological study on the genus, illustrating the male 53 mm in 1884, both measurements being consistent with and female genitalia of two species. Although these skip- the specimen now numbered NHMUK010621353 being both pers are robust and striking, no authors have proposed the supposed female syntype of C. empyreus and the holo- any fundamentally outstanding morphological charac- type of T. fastuosus. Once Mabille acquired a true female of ters of Malaza in a comparative context, although Mabille Malaza empyreus, of similar size to its male, he apparently (1904) mentioned the inflated hindleg first tarsal seg- realized his mistake (Mabille [1887]: 337–338). While it is ment peculiar to M. carmides. Although the genus has not not known when and exactly where or by whom the spec- previously been included in molecular analyses, two spe- imen was collected, the collection event was prior to cies have been DNA barcoded by D.C.L. (M. carmides, Genome Downloaded from www.nrcresearchpress.com by Nick V. Grishin on 03/06/20 15 December 1878, the dating of the page where the descrip- M. empyreus) but neighbor-joining and ad hoc phylogenetic tion of the female syntype of C. empyreus was published analyses of barcodes fails to place the genus reliably. (Mabille 1878: 285), alongside other species typical of east- To learn more about these Malagasy skippers, we se- ern lowland rainforest described there, notably M.