Marine Protected Area Restricts Demographic Connectivity: Dissimilarity in a Marine Environment Can Function As a Biological Barrier
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Assessing Species Diversity of Coral Triangle Artisanal Fisheries: a DNA Barcode Reference Library for the Shore Fishes Retailed at Ambon Harbor (Indonesia)
Received: 19 September 2019 | Revised: 30 January 2020 | Accepted: 3 February 2020 DOI: 10.1002/ece3.6128 ORIGINAL RESEARCH Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia) Gino Limmon1 | Erwan Delrieu-Trottin2,3 | Jesaya Patikawa1 | Frederik Rijoly1 | Hadi Dahruddin4 | Frédéric Busson2,5 | Dirk Steinke6 | Nicolas Hubert2 1Pusat Kemaritiman dan Kelautan, Universitas Pattimura (Maritime and Marine Abstract Science Center of Excellence), Ambon, The Coral Triangle (CT), a region spanning across Indonesia and Philippines, is home Indonesia to about 4,350 marine fish species and is among the world's most emblematic re- 2Institut de Recherche pour le Développement, UMR 226 ISEM (UM- gions in terms of conservation. Threatened by overfishing and oceans warming, the CNRS-IRD-EPHE), Montpellier, France CT fisheries have faced drastic declines over the last decades. Usually monitored 3Museum für Naturkunde, Leibniz-Institut für Evolutions-und Biodiversitätsforschung through a biomass-based approach, fisheries trends have rarely been characterized an der Humboldt-Universität zu Berlin, at the species level due to the high number of taxa involved and the difficulty to Berlin, Germany accurately and routinely identify individuals to the species level. Biomass, however, 4Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences is a poor proxy of species richness, and automated methods of species identifica- (LIPI), Cibinong, Indonesia tion are required to move beyond biomass-based approaches. Recent meta-analyses 5UMR 7208 BOREA (MNHN-CNRS-UPMC- have demonstrated that species richness peaks at intermediary levels of biomass. IRD-UCBN), Muséum National d’Histoire Naturelle, Paris, France Consequently, preserving biomass is not equal to preserving biodiversity. -
One Smart Fish Free
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Reef Fish, Bolbometopon Muricatum, in a Remote Marine Reserve
Extraordinary Aggressive Behavior from the Giant Coral Reef Fish, Bolbometopon muricatum, in a Remote Marine Reserve Roldan C. Mun˜ oz1*, Brian J. Zgliczynski2, Joseph L. Laughlin3, Bradford Z. Teer1 1 National Marine Fisheries Service, Beaufort Laboratory, National Oceanic and Atmospheric Administration, Beaufort, North Carolina, United States of America, 2 Center for Marine Biodiversity and Conservation, Scripps Institution of Oceanography, La Jolla, California, United States of America, 3 Mariculture Hawaii LLC, Ashland, Oregon, United States of America Abstract Human impacts to terrestrial and marine communities are widespread and typically begin with the local extirpation of large- bodied animals. In the marine environment, few pristine areas relatively free of human impact remain to provide baselines of ecosystem function and goals for restoration efforts. Recent comparisons of remote and/or protected coral reefs versus impacted sites suggest remote systems are dominated by apex predators, yet in these systems the ecological role of non- predatory, large-bodied, highly vulnerable species such as the giant bumphead parrotfish (Bolbometopon muricatum) has received less attention. Overfishing of Bolbometopon has lead to precipitous declines in population density and avoidance of humans throughout its range, contributing to its status as a candidate species under the U. S. Endangered Species Act and limiting opportunities to study unexploited populations. Here we show that extraordinary ecological processes, such as violent headbutting contests by the world’s largest parrotfish, can be revealed by studying unexploited ecosystems, such as the coral reefs of Wake Atoll where we studied an abundant population of Bolbometopon. Bolbometopon is among the largest of coral reef fishes and is a well known, charismatic species, yet to our knowledge, no scientific documentation of ritualized headbutting exists for marine fishes. -
Recruitment in Anemonefishes
Interspecific, Spatial and Temporal Variability of Self- Recruitment in Anemonefishes Hawis H. Madduppa1*, Janne Timm2, Marc Kochzius3 1 Marine Science and Technology, Faculty of Fisheries and Marine Science, Bogor Agricultural University (IPB), Bogor, Indonesia, 2 Biotechnology and Molecular Genetics, University of Bremen, Bremen, Germany, 3 Marine Biology, Vrije Universiteit Brussel, Brussels, Belgium Abstract Polymorphic microsatellite DNA parentage analysis was used to investigate the spatio-temporal variability of self- recruitment in populations of two anemonefishes: Amphiprion ocellaris and A. perideraion. Tissue samples of A. ocellaris (n = 364) and A. perideraion (n = 105) were collected from fringing reefs around two small islands (Barrang Lompo and Samalona) in Spermonde Archipelago, Indonesia. Specimens were genotyped based on seven microsatellite loci for A. ocellaris and five microsatellite loci for A. perideraion, and parentage assignment as well as site fidelity were calculated. Both species showed high levels of self-recruitment: 65.2% of juvenile A. ocellaris in Samalona were the progeny of parents from the same island, while on Barrang Lompo 47.4% of A. ocellaris and 46.9% of A. perideraion juveniles had parents from that island. Self-recruitment of A. ocellaris in Barrang Lompo varied from 44% to 52% between the two sampling periods. The site fidelity of A. ocellaris juveniles that returned to their reef site in Barang Lompo was up to 44%, while for A. perideraion up to 19%. In Samalona, the percentage of juveniles that returned to their natal reef site ranged from 8% to 11%. Exchange of progeny between the two study islands, located 7.5 km apart, was also detected via parentage assignments. -
Diet and Condition of Mesopredators on Coral Reefs in Relation to Shark Abundance
RESEARCH ARTICLE Diet and condition of mesopredators on coral reefs in relation to shark abundance Shanta C. Barley1,2*, Mark G. Meekan2, Jessica J. Meeuwig1 1 School of Animal Biology and the Oceans Institute, University of Western Australia, Crawley, Western Australia, Perth, Australia, 2 Australian Institute of Marine Science, The Oceans Institute, University of Western Australia, Crawley, Western Australia, Perth, Australia * [email protected] a1111111111 a1111111111 Abstract a1111111111 a1111111111 Reef sharks may influence the foraging behaviour of mesopredatory teleosts on coral reefs a1111111111 via both risk effects and competitive exclusion. We used a ªnatural experimentº to test the hypothesis that the loss of sharks on coral reefs can influence the diet and body condition of mesopredatory fishes by comparing two remote, atoll-like reef systems, the Rowley Shoals and the Scott Reefs, in northwestern Australia. The Rowley Shoals are a marine reserve OPEN ACCESS where sharks are abundant, whereas at the Scott Reefs numbers of sharks have been Citation: Barley SC, Meekan MG, Meeuwig JJ reduced by centuries of targeted fishing. On reefs where sharks were rare, the gut contents (2017) Diet and condition of mesopredators on of five species of mesopredatory teleosts largely contained fish while on reefs with abundant coral reefs in relation to shark abundance. PLoS sharks, the same mesopredatory species consumed a larger proportion of benthic inverte- ONE 12(4): e0165113. https://doi.org/10.1371/ journal.pone.0165113 brates. These measures of diet were correlated with changes in body condition, such that the condition of mesopredatory teleosts was significantly poorer on reefs with higher shark Editor: Timothy Darren Clark, University of Tasmania, AUSTRALIA abundance. -
Seed Production and Culture of Marine Ornamental Fishes G
Course Manual Seed Production and Culture of Marine Ornamental Fishes G. Gopakumar, A. K. Abdul Nazar and R. Jayakumar Mandapam Regional Centre of CMFRI Mandapam Camp - 623 520, Tamil Nadu, India Introduction The marine ornamental fish trade has been expanding in recent years and has grown into a multimillion dollar enterprise. The ornamental animals are the highest valued products that are mostly harvested from coral reef environments. The global marine ornamental trade is estimated at US$ 200-330 million. The trade is operated throughout the tropics. Philippines, Indonesia, Solomon Islands, Sri Lanka, Australia, Fiji, Maldives and Palau supplied more than 98% of the total number of marine ornamental fish exported in recent years. It is a multi-stakeholder industry ranging from specimen collectors, culturists, wholesalers, transhippers, retailers, and hobbyists to researchers, government resource managers and conservators and hence involves a series of issues to be addressed and policies to be formulated for developing and expanding a sustainable trade. It is well understood that a long term sustainable trade of marine ornamental fishes can be developed only through the development and commercialization of hatchery production technologies for the species which are in high demand in the trade. Global scenario In recent years it has been reported that nearly 1500 species of marine ornamental fishes are traded globally and most of these are associated with coral reefs. Nearly 98% of the marine ornamental fishes marketed are wild collected from coral reefs of tropical countries. Among the most commercially traded families of reef fishes, family Pomacentridae dominate, accounting for nearly 43% of all fish traded. -
DNA Barcoding of Commercially Important Reef Fishes in Weh Island, Aceh, Indonesia
DNA barcoding of commercially important reef fishes in Weh Island, Aceh, Indonesia Nur Fadli1,*, Siti Azizah Mohd Nor2,3,*, Ahmad Sofiman Othman3, Hizir Sofyan4 and Zainal A. Muchlisin1 1 Faculty of Marine and Fisheries, Syiah Kuala University, Banda Aceh, Aceh, Indonesia 2 Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia 3 School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia 4 Faculty of Mathematics and Natural Science, Syiah Kuala University, Banda Aceh, Aceh, Indonesia * These authors contributed equally to this work. ABSTRACT Knowledge on the precise identification of fish resources is critical for sustainable fisheries management. This study employs the DNA barcoding approach to generate a molecular taxonomic catalogue of commercially important reef fishes in the waters of Weh Island (Aceh Province), the most northerly inhabited island in the biodiverse Indonesian Archipelago. The waters not only support artisanal fisheries but also a feeder for the industry in the greater island of Aceh. In total, 230 specimens from 72 species belonging to 32 genera and 17 families were DNA barcoded, representing a major segment of the captured reef fish taxa and a quarter of fish species diversity that had previously been recorded. The sequence read lengths were 639 bp revealing 359 conserved sites, 280 variable sites, 269 parsimony informative and 11 singletons. Our molecular findings paralleled the morphological identification with no evidence of cryptic species or new species discovery. This study is a significant contribution to the fisheries statistics of this area, which would facilitate assessment of species catch composition and hence for strategizing management plans. It is an important input to Submitted 6 August 2019 the DNA barcode library of Indonesian marine fishes and to the global DNA barcode Accepted 9 July 2020 entries in general. -
Report on Roving Collectors: Case Studies from Indonesia and the Philippines” November 2006
i MAMTI Technical Paper: “Report on Roving Collectors: Case Studies from Indonesia and the Philippines” November 2006 ALL RIGHTS RESERVED. No part of this document may be reproduced, stored in a retrieval system, transmitted in any form or by any means, or otherwise circulated in any form, binding or cover, other than the form, binding and cover in which it was published, without prior written permission of the Marine Aquarium Council, on behalf ot Reef Check and Conservation and Community Investment Forum and the International Finance Corporation, Global Environment Facility, Conservation International and United States Agency for International Development (USAID). Marine Aquarium Council 6th Floor Salustiana D. Ty Tower 104 Paseo de Roxas, Legaspi Village Makati City Tel : +632-813-1308 www.aquariumcouncil.org Disclaimer This report was prepared by Marine Aquarium Council, Reef Check and the Conservation and Community Investment Forum. The judgments expressed do not necessarily reflect the views of the Marine Aquarium Council, Reef Check and Conservation and Community Investment Forum, the funding agencies: the International Finance Corporation, Global Environment Facility, Conservation International and United States Agency for International Development (USAID). While every effort has been made to ensure accuracy of the information contained in this technical paper, this is not guaranteed. Accordingly, neither the Marine Aquarium Council, Reef Check and Conservation and Community Investment Forum nor the International Finance Corporation, Global Environment Facility, Conservation International and United States Agency for International Development (USAID) accepts any liability for actions taken based on this material. Printed: November 2006 ii Table of Contents LIST OF TABLES AND FIGURES .................................................................................. IV INTRODUCTION .......................................................................................................... -
Siganus Unimaculatus, S. Virgatus, S
Spatial distributions, feeding ecologies, and behavioral interactions of four rabbitfish species (Siganus unimaculatus, S. virgatus, S. corallinus, and S. puellus) Atsushi Nanami Research Center for Sub-tropical Fisheries, Seikai National Fisheries Research Institute, Japan Fisheries Research and Education Agency, Ishigaki, Okinawa, Japan ABSTRACT Clarifying the underlying mechanisms that enable closely related species to coexist in a particular environment is a fundamental aspect of ecology. Coral reefs support a high diversity of marine organisms, among which rabbitfishes (family Siganidae) are a major component The present study aimed to reveal the mechanism that allows rabbitfishes to coexist on coral reefs in Okinawa, Japan, by investigating the spatial distributions, feeding ecologies, and behavioral interactions of four species: Siganus unimaculatus, S. virgatus, S. corallinus, and S. puellus. All four species had a size-specific spatial distribution, whereby small individuals were found in sheltered areas that were covered by branching and bottlebrush Acropora spp. and large individuals were found in both sheltered and exposed rocky areas. However, no clear species-specific spatial distribution was observed. There was some variation in the food items taken, with S. unimaculatus primarily feeding on brown foliose algae, red foliose algae, and red styloid algae, and S. virgatus and S. puellus preferring brown foliose algae and sponges, respectively. However, S. corallinus did not show any clear differences in food preferences from S. virgatus or S. unimaculatus, mainly feeding on brown foliose algae and red styloid algae. The four species exhibited differences in foraging substrate use, which was probably related to differences in their body shape characteristics: Submitted 7 August 2018 S. -
Rev Iss Web Mec 13823 25-20 5203..5211
UC Santa Cruz UC Santa Cruz Previously Published Works Title Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms. Permalink https://escholarship.org/uc/item/3009m2hq Journal Molecular ecology, 25(20) ISSN 0962-1083 Authors Beldade, Ricardo Holbrook, Sally J Schmitt, Russell J et al. Publication Date 2016-10-01 DOI 10.1111/mec.13823 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Molecular Ecology (2016) 25, 5203–5211 doi: 10.1111/mec.13823 Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms RICARDO BELDADE,*†‡ SALLY J. HOLBROOK,§ RUSSELL J. SCHMITT,§ SERGE PLANES*† and GIACOMO BERNARDI¶ *EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, BP 1013, 98729, Papetoai, Moorea, French Polynesia, †Laboratoire d’excellence “CORAIL”, EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, BP 1013, 98729, Papetoai, Moorea, French Polynesia, ‡MARE – Marine and Environmental Sciences Centre, Faculdade de Ci^encias da, Universidade de Lisboa, Campo Grande, Lisboa 1749-016, Portugal, §Coastal Research Center, Department of Ecology, Evolution and Marine Biology, Marine Science Institute, University of California Santa Barbara, Santa Barbara, CA 93106, USA, ¶Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 100 Shaffer Road, Santa Cruz, CA 95060, USA Abstract Oceanographic features influence the transport and delivery of marine larvae, and physical retention mechanisms, such as eddies, can enhance self-recruitment (i.e. the return of larvae to their natal population). Knowledge of exact locations of hatching (origin) and settlement (arrival) of larvae of reef animals provides a means to compare observed patterns of self-recruitment ‘connectivity’ with those expected from water cir- culation patterns. -
Pisces: Lutjanidae: Lutjanus) from the Indo-West Pacific
Two new species of snappers (Pisces: Lutjanidae: Lutjanus) from the Indo-West Pacific GERALD R. ALLEN Western Australian Museum, Locked Bag 49, Welshpool DC Perth, Western Australia 6986, Australia. E-mail: [email protected] WILLIAM T. WHITE CSIRO Marine Research, Wealth from Oceans Flagship, GPO Box 1538, Hobart, Tasmania 7011, Australia MARK V. ERDMANN Conservation International, Jl. Dr. Muwardi No. 17, Renon, Denpasar, Bali 80235, Indonesia Abstract Two new species of snappers, genus Lutjanus, are described from Indo-West Pacific seas.Lutjanus indicus is de- scribed from 20 specimens, 54.7–226 mm SL, from western Thailand, India, Sri Lanka, and Bahrain. It has also been photographed at Oman and the Andaman Islands (tissue sample also taken). It has invariably been confused with its sibling species, L. russellii, from the western Pacific. Comparison of the mitochondrial cytochrome c oxidase subunit 1 (CO1) genetic marker utilised in DNA barcoding produced a genetic divergence of about 4.1 % between L. indicus and its closest congener, L. russellii. In addition, significant colour differences are useful for separating the two species, specifically a series of seven narrow yellow-to-brown stripes on the side, obliquely rising (except lower two) dorsally and posteriorly, which are present on both juveniles and adults of L. indicus. Lutjanus papuensis is described from four specimens, 173–259 mm SL, collected at Cenderawasih Bay, West Papua and purchased from fish markets at Bali and western Java, Indonesia. It has also been observed at Timor Leste, northern Papua New Guinea, and the Solomon Islands. It is most closely related to L. -
Inventory and Assessment of Marine Fishes in the Island Towns Of
J.Bio.Innov 8(3), pp: 391-398, 2019 |ISSN 2277-8330 (Electronic) Galenzoga Inventory andCollege Assessment of Science, University of Marine of Eastern Philippines,Fishes in the Island Towns of Northern Samar, Philippines Divina Minguez-Galenzoga The Coral Triangle, which includes the Philippines, is the Abstract heartland of marine biodiversity. There is relatively poor The study aimed to identify the species documentation for most groups other than fishes and corals. Even with fishes, there is a scarcity of information from specific composition of marine fishes in the island locations within the Triangle [2]. towns of Northern Samar, Philippines; In the coastal areas reside about 59% of the country’s total determine their abundance and population and this is where about 70% of the 1,525 of the distribution; point out their local names; municipalities in the country, including 10 of the largest cities are located. This indicates how the lives of most Filipinos are and identify the fishing gears used by closely linked with the sea and its biodiversity [3]. fishermen. Sampling areas included the five Thus, this research study is pursued to add to the collective island towns of the province; i.e. Biri, Capul, data of information for marine fishes in island towns. Laoang, San Antonio, and San Vicente. for three years (2016 – 2018) during summer I. OBJECTIVES months. Data were gathered using The objectives of this study are: 1. To identify the species composition of marine fishes in the translated questionnaires. All fishes caught island towns of Northern Samar, Philippines; and sold were included in the study.