Diet and Condition of Mesopredators on Coral Reefs in Relation to Shark Abundance
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Assessing Species Diversity of Coral Triangle Artisanal Fisheries: a DNA Barcode Reference Library for the Shore Fishes Retailed at Ambon Harbor (Indonesia)
Received: 19 September 2019 | Revised: 30 January 2020 | Accepted: 3 February 2020 DOI: 10.1002/ece3.6128 ORIGINAL RESEARCH Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia) Gino Limmon1 | Erwan Delrieu-Trottin2,3 | Jesaya Patikawa1 | Frederik Rijoly1 | Hadi Dahruddin4 | Frédéric Busson2,5 | Dirk Steinke6 | Nicolas Hubert2 1Pusat Kemaritiman dan Kelautan, Universitas Pattimura (Maritime and Marine Abstract Science Center of Excellence), Ambon, The Coral Triangle (CT), a region spanning across Indonesia and Philippines, is home Indonesia to about 4,350 marine fish species and is among the world's most emblematic re- 2Institut de Recherche pour le Développement, UMR 226 ISEM (UM- gions in terms of conservation. Threatened by overfishing and oceans warming, the CNRS-IRD-EPHE), Montpellier, France CT fisheries have faced drastic declines over the last decades. Usually monitored 3Museum für Naturkunde, Leibniz-Institut für Evolutions-und Biodiversitätsforschung through a biomass-based approach, fisheries trends have rarely been characterized an der Humboldt-Universität zu Berlin, at the species level due to the high number of taxa involved and the difficulty to Berlin, Germany accurately and routinely identify individuals to the species level. Biomass, however, 4Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences is a poor proxy of species richness, and automated methods of species identifica- (LIPI), Cibinong, Indonesia tion are required to move beyond biomass-based approaches. Recent meta-analyses 5UMR 7208 BOREA (MNHN-CNRS-UPMC- have demonstrated that species richness peaks at intermediary levels of biomass. IRD-UCBN), Muséum National d’Histoire Naturelle, Paris, France Consequently, preserving biomass is not equal to preserving biodiversity. -
Reef Fish, Bolbometopon Muricatum, in a Remote Marine Reserve
Extraordinary Aggressive Behavior from the Giant Coral Reef Fish, Bolbometopon muricatum, in a Remote Marine Reserve Roldan C. Mun˜ oz1*, Brian J. Zgliczynski2, Joseph L. Laughlin3, Bradford Z. Teer1 1 National Marine Fisheries Service, Beaufort Laboratory, National Oceanic and Atmospheric Administration, Beaufort, North Carolina, United States of America, 2 Center for Marine Biodiversity and Conservation, Scripps Institution of Oceanography, La Jolla, California, United States of America, 3 Mariculture Hawaii LLC, Ashland, Oregon, United States of America Abstract Human impacts to terrestrial and marine communities are widespread and typically begin with the local extirpation of large- bodied animals. In the marine environment, few pristine areas relatively free of human impact remain to provide baselines of ecosystem function and goals for restoration efforts. Recent comparisons of remote and/or protected coral reefs versus impacted sites suggest remote systems are dominated by apex predators, yet in these systems the ecological role of non- predatory, large-bodied, highly vulnerable species such as the giant bumphead parrotfish (Bolbometopon muricatum) has received less attention. Overfishing of Bolbometopon has lead to precipitous declines in population density and avoidance of humans throughout its range, contributing to its status as a candidate species under the U. S. Endangered Species Act and limiting opportunities to study unexploited populations. Here we show that extraordinary ecological processes, such as violent headbutting contests by the world’s largest parrotfish, can be revealed by studying unexploited ecosystems, such as the coral reefs of Wake Atoll where we studied an abundant population of Bolbometopon. Bolbometopon is among the largest of coral reef fishes and is a well known, charismatic species, yet to our knowledge, no scientific documentation of ritualized headbutting exists for marine fishes. -
DNA Barcoding of Commercially Important Reef Fishes in Weh Island, Aceh, Indonesia
DNA barcoding of commercially important reef fishes in Weh Island, Aceh, Indonesia Nur Fadli1,*, Siti Azizah Mohd Nor2,3,*, Ahmad Sofiman Othman3, Hizir Sofyan4 and Zainal A. Muchlisin1 1 Faculty of Marine and Fisheries, Syiah Kuala University, Banda Aceh, Aceh, Indonesia 2 Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia 3 School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia 4 Faculty of Mathematics and Natural Science, Syiah Kuala University, Banda Aceh, Aceh, Indonesia * These authors contributed equally to this work. ABSTRACT Knowledge on the precise identification of fish resources is critical for sustainable fisheries management. This study employs the DNA barcoding approach to generate a molecular taxonomic catalogue of commercially important reef fishes in the waters of Weh Island (Aceh Province), the most northerly inhabited island in the biodiverse Indonesian Archipelago. The waters not only support artisanal fisheries but also a feeder for the industry in the greater island of Aceh. In total, 230 specimens from 72 species belonging to 32 genera and 17 families were DNA barcoded, representing a major segment of the captured reef fish taxa and a quarter of fish species diversity that had previously been recorded. The sequence read lengths were 639 bp revealing 359 conserved sites, 280 variable sites, 269 parsimony informative and 11 singletons. Our molecular findings paralleled the morphological identification with no evidence of cryptic species or new species discovery. This study is a significant contribution to the fisheries statistics of this area, which would facilitate assessment of species catch composition and hence for strategizing management plans. It is an important input to Submitted 6 August 2019 the DNA barcode library of Indonesian marine fishes and to the global DNA barcode Accepted 9 July 2020 entries in general. -
Marine Protected Area Restricts Demographic Connectivity: Dissimilarity in a Marine Environment Can Function As a Biological Barrier
Received: 2 July 2017 | Accepted: 15 July 2017 DOI: 10.1002/ece3.3318 ORIGINAL RESEARCH Marine protected area restricts demographic connectivity: Dissimilarity in a marine environment can function as a biological barrier Masaaki Sato1 | Kentaro Honda2 | Wilfredo H. Uy3 | Darwin I. Baslot3 | Tom G. Genovia3 | Yohei Nakamura4 | Lawrence Patrick C. Bernardo5 | Hiroyuki Kurokochi6 | Allyn Duvin S. Pantallano3,4 | Chunlan Lian6 | Kazuo Nadaoka5 | Masahiro Nakaoka2 1Graduate School of Environmental Science, Hokkaido University, Akkeshi-cho, Hokkaido, Japan 2Akkeshi Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Akkeshi-cho, Hokkaido, Japan 3Institute of Fisheries Research and Development, Mindanao State University at Naawan, Naawan, Misamis Oriental, Philippines 4Graduate School of Kuroshio Science, Kochi University, Nankoku, Kochi, Japan 5Department of Mechanical and Environmental Informatics, Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro, Tokyo, Japan 6Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, Japan Correspondence Masaaki Sato, Graduate School of Abstract Environmental Science, Hokkaido University, The establishment of marine protected areas (MPAs) can often lead to environmental Akkeshi-cho, Hokkaido, Japan. Email: [email protected] differences between MPAs and fishing zones. To determine the effects on marine dispersal of environmental dissimilarity between an MPA and fishing zone, we exam- Present addresses Masaaki Sato, National Research Institute ined the abundance and recruitment patterns of two anemonefishes (Amphiprion fre- of Fisheries Engineering, Japan Fisheries natus and A. perideraion) that inhabit sea anemones in different management zones Research and Education Agency, Hasaki, Kamisu-shi, Ibaraki, Japan (i.e., an MPA and two fishing zones) by performing a field survey and a genetic parent- Kentaro Honda, Hokkaido National Fisheries age analysis. -
Siganus Unimaculatus, S. Virgatus, S
Spatial distributions, feeding ecologies, and behavioral interactions of four rabbitfish species (Siganus unimaculatus, S. virgatus, S. corallinus, and S. puellus) Atsushi Nanami Research Center for Sub-tropical Fisheries, Seikai National Fisheries Research Institute, Japan Fisheries Research and Education Agency, Ishigaki, Okinawa, Japan ABSTRACT Clarifying the underlying mechanisms that enable closely related species to coexist in a particular environment is a fundamental aspect of ecology. Coral reefs support a high diversity of marine organisms, among which rabbitfishes (family Siganidae) are a major component The present study aimed to reveal the mechanism that allows rabbitfishes to coexist on coral reefs in Okinawa, Japan, by investigating the spatial distributions, feeding ecologies, and behavioral interactions of four species: Siganus unimaculatus, S. virgatus, S. corallinus, and S. puellus. All four species had a size-specific spatial distribution, whereby small individuals were found in sheltered areas that were covered by branching and bottlebrush Acropora spp. and large individuals were found in both sheltered and exposed rocky areas. However, no clear species-specific spatial distribution was observed. There was some variation in the food items taken, with S. unimaculatus primarily feeding on brown foliose algae, red foliose algae, and red styloid algae, and S. virgatus and S. puellus preferring brown foliose algae and sponges, respectively. However, S. corallinus did not show any clear differences in food preferences from S. virgatus or S. unimaculatus, mainly feeding on brown foliose algae and red styloid algae. The four species exhibited differences in foraging substrate use, which was probably related to differences in their body shape characteristics: Submitted 7 August 2018 S. -
Pisces: Lutjanidae: Lutjanus) from the Indo-West Pacific
Two new species of snappers (Pisces: Lutjanidae: Lutjanus) from the Indo-West Pacific GERALD R. ALLEN Western Australian Museum, Locked Bag 49, Welshpool DC Perth, Western Australia 6986, Australia. E-mail: [email protected] WILLIAM T. WHITE CSIRO Marine Research, Wealth from Oceans Flagship, GPO Box 1538, Hobart, Tasmania 7011, Australia MARK V. ERDMANN Conservation International, Jl. Dr. Muwardi No. 17, Renon, Denpasar, Bali 80235, Indonesia Abstract Two new species of snappers, genus Lutjanus, are described from Indo-West Pacific seas.Lutjanus indicus is de- scribed from 20 specimens, 54.7–226 mm SL, from western Thailand, India, Sri Lanka, and Bahrain. It has also been photographed at Oman and the Andaman Islands (tissue sample also taken). It has invariably been confused with its sibling species, L. russellii, from the western Pacific. Comparison of the mitochondrial cytochrome c oxidase subunit 1 (CO1) genetic marker utilised in DNA barcoding produced a genetic divergence of about 4.1 % between L. indicus and its closest congener, L. russellii. In addition, significant colour differences are useful for separating the two species, specifically a series of seven narrow yellow-to-brown stripes on the side, obliquely rising (except lower two) dorsally and posteriorly, which are present on both juveniles and adults of L. indicus. Lutjanus papuensis is described from four specimens, 173–259 mm SL, collected at Cenderawasih Bay, West Papua and purchased from fish markets at Bali and western Java, Indonesia. It has also been observed at Timor Leste, northern Papua New Guinea, and the Solomon Islands. It is most closely related to L. -
Inventory and Assessment of Marine Fishes in the Island Towns Of
J.Bio.Innov 8(3), pp: 391-398, 2019 |ISSN 2277-8330 (Electronic) Galenzoga Inventory andCollege Assessment of Science, University of Marine of Eastern Philippines,Fishes in the Island Towns of Northern Samar, Philippines Divina Minguez-Galenzoga The Coral Triangle, which includes the Philippines, is the Abstract heartland of marine biodiversity. There is relatively poor The study aimed to identify the species documentation for most groups other than fishes and corals. Even with fishes, there is a scarcity of information from specific composition of marine fishes in the island locations within the Triangle [2]. towns of Northern Samar, Philippines; In the coastal areas reside about 59% of the country’s total determine their abundance and population and this is where about 70% of the 1,525 of the distribution; point out their local names; municipalities in the country, including 10 of the largest cities are located. This indicates how the lives of most Filipinos are and identify the fishing gears used by closely linked with the sea and its biodiversity [3]. fishermen. Sampling areas included the five Thus, this research study is pursued to add to the collective island towns of the province; i.e. Biri, Capul, data of information for marine fishes in island towns. Laoang, San Antonio, and San Vicente. for three years (2016 – 2018) during summer I. OBJECTIVES months. Data were gathered using The objectives of this study are: 1. To identify the species composition of marine fishes in the translated questionnaires. All fishes caught island towns of Northern Samar, Philippines; and sold were included in the study. -
Mapping the Movement of Marine Fishes: Methods, Mechanisms, and Implications for Invasion Management
Mapping the Movement of Marine Fishes: Methods, Mechanisms, and Implications for Invasion Management by Natascia Laila Tamburello B.Sc., McGill University, 2007 Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in the Department of Biological Sciences Faculty of Science Natascia Laila Tamburello 2015 SIMON FRASER UNIVERSITY Fall 2015 Approval Name: Natascia Laila Tamburello Degree: Doctor of Philosophy (Biological Sciences) Title: Mapping the Movement of Marine Fishes: Methods, Mechanisms, and Implications for Invasion Management Examining Committee: Chair: Eirikur Palsson Assistant Professor Isabelle M. Côté Senior Supervisor Professor Nicholas K. Dulvy Supervisor Professor Wendy J. Palen Supervisor Associate Professor David J. Green Internal Examiner Professor Phillip Levin External Examiner Program Manager Ecosystem Science NOAA Fisheries Date Defended/Approved: September 21, 2015 ii Ethics Statement iii Abstract Movement represents a key ecological trait of individuals that has important implications for the spatial structuring of population, community, and ecosystem processes. However, the spatial ecology of terrestrial organisms is much better understood than that of their comparatively understudied aquatic counterparts. My thesis focuses on the methods and mechanisms underpinning the study of movement ecology in fishes, with special attention on the movement of invasive Indo-Pacific lionfish (Pterois volitans and P. miles) on Caribbean coral reefs and its implications for invasion management. I begin by comparing broad-scale patterns of space use across all vertebrates, including fishes, to draw general conclusions about the factors driving their space requirements. My models reveal that body mass, locomotion strategy, foraging dimension, and trophic level predict ~80% of the variation in vertebrate home range size. -
National Report on the Fish Stocks and Habitats of Regional, Global
United Nations UNEP/GEF South China Sea Global Environment Environment Programme Project Facility NATIONAL REPORT on The Fish Stocks and Habitats of Regional, Global, and Transboundary Significance in the South China Sea THAILAND Mr. Pirochana Saikliang Focal Point for Fisheries Chumphon Marine Fisheries Research and Development Center 408 Moo 8, Paknum Sub-District, Muang District, Chumphon 86120, Thailand NATIONAL REPORT ON FISHERIES – THAILAND Table of Contents 1. MARINE FISHERIES DEVELOPMENT........................................................................................2 / 1.1 OVERVIEW OF THE FISHERIES SECTOR ...................................................................................2 1.1.1 Total catch by fishing area, port of landing or province (by species/species group).7 1.1.2 Fishing effort by gear (no. of fishing days, or no. of boats) .......................................7 1.1.2.1 Trawl ...........................................................................................................10 1.1.2.2 Purse seine/ring net....................................................................................10 1.1.2.3 Gill net.........................................................................................................12 1.1.2.4 Other gears.................................................................................................12 1.1.3 Economic value of catch..........................................................................................14 1.1.4 Importance of the fisheries sector -
Chec List an Update to the List of Coral Reef Fishes from Koh Tao, Gulf Of
Check List 10(5): 1123–1133, 2014 © 2014 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution An update to the list PECIES S Gulf of Thailand OF of coral reef fishes from Koh Tao, 1* 2 ISTS Patrick Scaps and Chad Scott L 1 Laboratoire de Biologie animale,[email protected] Université des Sciences et Technologies de Lille, 59 655 Villeneuve d’Ascq Cédex, France. 2 New Heaven Reef Conservation Program, 48 Moo 3, Koh Tao, Suratthani, Thailand, 84360. * Corresponding author: E-mail: ABSTRACT: (i.e., cryptic species or transient Twenty-one species are reported for the first time from Koh Tao (Turtle Island) in the Gulf of Thailand. TInformationhis and photographs were obtained from local scuba divers in order to censusAntennatus rare and Histrio), Ophichthyidae (genusspecies onlyCallechelys present), duringPlatycephalidae one season) (genus or not previouslyThysanophrys recorded), Plotosidae fish species (genus living Plotosus on or near) and coral Synanceiidae reefs from the(genera area. Inimicus is the and first Synanceia time that species belonging to the families AntennariidaePseudobalistes, (genera Balistidae; Cyclichthys, Diodontidae; Bolbometopon, Scaridae; and Hippocampus, ), and reef-fish genera of severalAntennatus families nummifer ( (Antennariidae), Pseudobalistes marginatus (Balistidae), Monacanthus chinensis (Monacanthidae),Syngnathidae), Callechelys among others,marmora haveta been(Ophichthyidae), recorded in KohThysnophrys Tao. Of the cf. 21 chiltonae species reported(Platycephalidae), for the first Bolbometopon time from muricatumKoh Tao, 7 (Scaridae) species ( and Synanceia cf. verrucosa (Synanceidae)) are new records for the species found in the present study. Gulf of Thailand. To date, 223 species of coral reef fishes belonging to 53 families are known from Koh Tao, including the 10.15560/10.5.1123 DOI: Introduction MaterialS and Methods 2 archipelago in the western Gulf of Thailand. -
An Analysis of the West Nggela (Solomon Islands) Fish Taxonomy
2 SPC Traditional Marine Resource Management and Knowledge Information Bulletin #9 – February 1998 Map of the Solomon Islands showing West Nggela region Figure 1: Figure SPC Traditional Marine Resource Management and Knowledge Information Bulletin #9 – February 1998 3 What’s in a name? An analysis of the West Nggela (Solomon Islands) fish taxonomy. by Simon Foale 1 Introduction Lobotidae, Gerreidae, Sparidae, Ephippidae, Chaetodontidae, Pomacentridae, Cirhitidae, Accurate knowledge about the behaviour, biol- Polynemidae, Labridae, Opistognathidae, ogy and ecology of organisms comprising marine Trichonotidae, Pinguipedidae, Blenniidae, fisheries is a vital prerequisite for their manage- Gobiidae, Microdesmidae, Zanclidae, Bothidae, ment. Before beginning any study on local knowl- Pleuronectidae, and Soleidae. edge of marine fauna, a working knowledge of The English names of many species of fish vary their local names must be obtained. Moreover, a quite a bit, even within one country such as great deal of local knowledge can often emerge in Australia. For most of the species listed in the very process of obtaining names (Ruddle, Appendix 1, I have used the English names given 1994). A detailed treatment of the local naming by Randall et al. (1990). For species not included in system of West Nggela marine fauna is given in Randall et al. (1990), names from Kailola (1987a, b, this paper. 1991) were used. Methods Results Local names of fish were collected by asking Appendix 1 contains 350 unique Nggela folk people to provide the Nggela names for fishes taxa for cartilaginous and bony fishes, together from photographs in books featuring most of the with the scientific (Linnean) taxa they correspond common Indo-Pacific species (Randall et al., 1990 to and, where available, a brief note describing an and Myers, 1991). -
APO REEF NATURAL PARK Rapid Site Assessment Report * April 2014
APO REEF NATURAL PARK Rapid Site Assessment Report * April 2014 Copyright: © Mindoro Biodiversity Conservation Foundation Inc. All rights reserved: Reproduction of this publication for resale or other commercial purposes, in any form or by any means, is prohibited without the express written permission from the publisher. Recommended Citation: Tabaranza,D.G.E, Cielo,K.L.S., Natural Jr,V., Dela Rosa Jr,G., Molina,E.P., Abes,J.L., Capoquian,R., Abes,M.L., Francisco,A.N. and G.C.Diamante(2014). Apo Reef Natural Park Rapid Site Assessment Report. Muntinlupa City. Mindoro Biodiversity Conservation Foundation Inc. ISBN 978-621-8010-08-6 Published by: Mindoro Biodiversity Conservation Foundation Inc. Manila Office 22F Asian Star Building, ASEAN Drive Filinvest Corporate City, Alabang, Muntilupa City, 1780 Philippines Telephone: +63 2 8502188 Fax: +63 2 8099447 E-mail: [email protected] Website: www.mbcfi.org.ph Provincial Office Gozar Street, Barangay Camilmil, Calapan City, Oriental Mindoro, 5200 Philippines Telephone/Fax: +63 43 2882326 0 APO REEF NATURAL PARK Rapid Site Assessment Report * April 2014 Table of Contents Section Page Acronyms & Abbreviations 2 List of Figures 3 List of Tables 4 List of Appendices 4 1. INTRODUCTION 5 2. RSA OBJECTIVES, SCOPE AND LIMMITATIONS 7 2.1. Objectives 7 2.2. Approach, Scope and Limitations 7 2.3. Data Collection Methods 8 Geo-physical Characteristics Biological Resources Socio-economic Characteristics 3. PROTECTED AREA PROFILE 14 3.1. Geo-Physical Characteristics 14 3.2. Terrestrial Biodiversity 15 Flora Fauna 3.3. Marine Biodiversity 20 Coral Reef Communities Reef Fish Communities 3.4. Socio-Cultural and Economic Profile 23 4.