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Reading Peer Review
EVE This Element describes for the first time the database of peer review reports at PLOS ONE, the largest scientific journal in ET AL. the world, to which the authors had unique access. Specifically, Reading Peer Review this Element presents the background contexts and histories of peer review, the data-handling sensitivities of this type PLOS ONE and Institutional of research, the typical properties of reports in the journal Change in Academia to which the authors had access, a taxonomy of the reports, and their sentiment arcs. This unique work thereby yields a compelling and unprecedented set of insights into the evolving state of peer review in the twenty-first century, at a crucial political moment for the transformation of science. It also, though, presents a study in radicalism and the ways in which Reading Peer Review Peer Reading PLOS’s vision for science can be said to have effected change in the ultra-conservative contemporary university. This title is also available as Open Access on Cambridge Core. Cambridge Elements in Publishing and Book Culture Series Editor: Samantha Rayner University College London Associate Editor: Leah Tether University of Bristol Publishing and Book Culture Academic Publishing Martin Paul Eve, Cameron Neylon, Daniel ISSN 2514-8524 (online) ISSN 2514-8516 (print) Paul O’Donnell, Samuel Moore, Robert Gadie, Downloaded from https://www.cambridge.org/core. IP address: 170.106.33.14, on 25 Sep 2021 at 19:03:04, subject to the Cambridge CoreVictoria terms of use, available Odeniyi at https://www.cambridge.org/core/terms and Shahina Parvin. https://doi.org/10.1017/9781108783521 Downloaded from https://www.cambridge.org/core. -
Wikipedia Edit-A-Thons and Editor Experience: Lessons from a Participatory Observation
Aalborg Universitet Wikipedia Edit-a-thons and Editor Experience: Lessons from a Participatory Observation Gluza, Wioletta; Turaj, Izabela ; Meier, Florian Maximilian Published in: Proceeding of 17th International Symposium on Open Collaboration (OpenSym2021) Publication date: 2021 Link to publication from Aalborg University Citation for published version (APA): Gluza, W., Turaj, I., & Meier, F. M. (Accepted/In press). Wikipedia Edit-a-thons and Editor Experience: Lessons from a Participatory Observation. In Proceeding of 17th International Symposium on Open Collaboration (OpenSym2021) General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. ? Users may download and print one copy of any publication from the public portal for the purpose of private study or research. ? You may not further distribute the material or use it for any profit-making activity or commercial gain ? You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us at [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Wikipedia Edit-a-thons and Editor Experience: Lessons from a Participatory Observation WIOLETTA GLUZA, Aalborg University Copenhagen, Denmark IZABELA ANNA TURAJ, Aalborg University Copenhagen, Denmark FLORIAN MEIER, Aalborg University Copenhagen, Denmark Wikipedia is one of the most important sources of encyclopedic knowledge and among the most visited websites on the internet. -
Position Description Addenda
POSITION DESCRIPTION January 2014 Wikimedia Foundation Executive Director - Addenda The Wikimedia Foundation is a radically transparent organization, and much information can be found at www.wikimediafoundation.org . That said, certain information might be particularly useful to nominators and prospective candidates, including: Announcements pertaining to the Wikimedia Foundation Executive Director Search Kicking off the search for our next Executive Director by Former Wikimedia Foundation Board Chair Kat Walsh An announcement from Wikimedia Foundation ED Sue Gardner by Wikimedia Executive Director Sue Gardner Video Interviews on the Wikimedia Community and Foundation and Its History Some of the values and experiences of the Wikimedia Community are best described directly by those who have been intimately involved in the organization’s dramatic expansion. The following interviews are available for viewing though mOppenheim.TV . • 2013 Interview with Former Wikimedia Board Chair Kat Walsh • 2013 Interview with Wikimedia Executive Director Sue Gardner • 2009 Interview with Wikimedia Executive Director Sue Gardner Guiding Principles of the Wikimedia Foundation and the Wikimedia Community The following article by Sue Gardner, the current Executive Director of the Wikimedia Foundation, has received broad distribution and summarizes some of the core cultural values shared by Wikimedia’s staff, board and community. Topics covered include: • Freedom and open source • Serving every human being • Transparency • Accountability • Stewardship • Shared power • Internationalism • Free speech • Independence More information can be found at: https://meta.wikimedia.org/wiki/User:Sue_Gardner/Wikimedia_Foundation_Guiding_Principles Wikimedia Policies The Wikimedia Foundation has an extensive list of policies and procedures available online at: http://wikimediafoundation.org/wiki/Policies Wikimedia Projects All major projects of the Wikimedia Foundation are collaboratively developed by users around the world using the MediaWiki software. -
Danish Resources
Danish resources Finn Arup˚ Nielsen November 19, 2017 Abstract A range of different Danish resources, datasets and tools, are presented. The focus is on resources for use in automated computational systems and free resources that can be redistributed and used in commercial applications. Contents 1 Corpora3 1.1 Wikipedia...................................3 1.2 Wikisource...................................3 1.3 Wikiquote...................................4 1.4 ADL......................................4 1.5 Gutenberg...................................4 1.6 Runeberg...................................5 1.7 Europarl....................................5 1.8 Leipzig Corpora Collection..........................5 1.9 Danish Dependency Treebank........................6 1.10 Retsinformation................................6 1.11 Other resources................................6 2 Lexical resources6 2.1 DanNet....................................6 2.2 Wiktionary..................................7 2.3 Wikidata....................................7 2.4 OmegaWiki..................................8 2.5 Other lexical resources............................8 2.6 Wikidata examples with medical terminology extraction.........8 3 Natural language processing tools9 3.1 NLTK.....................................9 3.2 Polyglot....................................9 3.3 spaCy.....................................9 3.4 Apache OpenNLP............................... 10 3.5 Centre for Language Technology....................... 10 3.6 Other libraries................................ -
Of Us Research Program Ethical, Legal, and Social Implications (ELSI)
All of Us Research Program Ethical, Legal, and Social Implications (ELSI) Research Priorities Workshop June 24–25, 2019 Executive Summary The All of Us Research Program’s Ethical, Legal, and Social Implications (ELSI) Research Priorities Workshop was held on June 24–25, 2019. The workshop convened ELSI professionals and All of Us participant ambassadors to help identify ELSI research opportunities using the All of Us Research Program, provide feedback on how to advance ELSI research by using the program and its data resources, and suggest ELSI-related research use cases.1 On Day 1, attendees received information on the program’s research platform, scientific framework and priorities, commitment to diversity, participant engagement strategy, data access and privacy policies, and new activities that are being planned. They also received a demonstration of the All of Us public data browser. Attendees then divided into working groups organized around three themes: (1) genomics; (2) social determinants of health; and (3) legal, regulatory, and policy issues. In these groups, attendees participated in a facilitated activity where they discussed and recorded ELSI research questions of interest and the data needed to answer them, including data with planned availability through the program’s Research Hub. During an open discussion on Day 2, attendees raised significant concerns about the structure of Day 1 and asserted that the program could make better use of their deep and varied expertise by reframing the workshop to allow for exploration of some important ELSI considerations that the program raises, including protecting participants’ rights and privacy and ensuring that participants have a real voice in the program. -
On the Evolution of Wikipedia
On the Evolution of Wikipedia Rodrigo B. Almeida Barzan Mozafari Junghoo Cho UCLA Computer Science UCLA Computer Science UCLA Computer Science Department Department Department Los Angeles - USA Los Angeles - USA Los Angeles - USA [email protected] [email protected] [email protected] Abstract time. So far, several studies have focused on understanding A recent phenomenon on the Web is the emergence and pro- and characterizing the evolution of this huge repository of liferation of new social media systems allowing social inter- data [5, 11]. action between people. One of the most popular of these Recently, a new phenomenon, called social systems, has systems is Wikipedia that allows users to create content in a emerged from the Web. Generally speaking, such systems collaborative way. Despite its current popularity, not much allow people not only to create content, but also to easily is known about how users interact with Wikipedia and how interact and collaborate with each other. Examples of such it has evolved over time. systems are: (1) Social network systems such as MySpace In this paper we aim to provide a first, extensive study of or Orkut that allow users to participate in a social network the user behavior on Wikipedia and its evolution. Compared by creating their profiles and indicating their acquaintances; to prior studies, our work differs in several ways. First, previ- (2) Collaborative bookmarking systems such as Del.icio.us or ous studies on the analysis of the user workloads (for systems Yahoo’s MyWeb in which users are allowed to share their such as peer-to-peer systems [10] and Web servers [2]) have bookmarks; and (3) Wiki systems that allow collaborative mainly focused on understanding the users who are accessing management of Web sites. -
A Fool's Errand
COMMENT by the madness of mobs. Will a crowd- sourced scholarship be dominated by pro- vocative pap that fills without nourishing? Here we must recall first that schol- arship has always been a community MONROE BRENDAN enterprise, driven by building consen- sus among experts10. So the question is not ‘Should we crowdsource?’ but ‘How should we crowdsource?’. Second, we must dispose of the straw-man argument that hundreds of uninformed readers’ opinions will count for more than one Fields medallist’s recommendation. Authority and expertise are central in the Web era as they were in the journal era. The difference is that whereas the paper- based system used subjective criteria to identify authoritative voices, the Web- based one assesses authority recursively from the entire community. We now have a unique opportunity as scholars to guide the evolution of our tools in directions that honour our val- ues and benefit our communities. Here’s what to do. First, try new things: publish new kinds of products, share them in new places and brag about them using new metrics. Intellectual playfulness is a core scholarly virtue. Second, take risks (another scholarly virtue): publishing more papers may be safe, but scholars who establish early leadership in Web- native production will be ahead of the curve as these genres become dominant. A fool’s errand Finally, resist the urge to cling to the trap- pings of scientific excellence rather than Objections to the Creative Commons attribution excellence itself. ‘Publication’ is just one mode of making public and one way of licence are straw men raised by parties who want open validating scholarly excellence. -
The Fourth Paradigm
ABOUT THE FOURTH PARADIGM This book presents the first broad look at the rapidly emerging field of data- THE FOUR intensive science, with the goal of influencing the worldwide scientific and com- puting research communities and inspiring the next generation of scientists. Increasingly, scientific breakthroughs will be powered by advanced computing capabilities that help researchers manipulate and explore massive datasets. The speed at which any given scientific discipline advances will depend on how well its researchers collaborate with one another, and with technologists, in areas of eScience such as databases, workflow management, visualization, and cloud- computing technologies. This collection of essays expands on the vision of pio- T neering computer scientist Jim Gray for a new, fourth paradigm of discovery based H PARADIGM on data-intensive science and offers insights into how it can be fully realized. “The impact of Jim Gray’s thinking is continuing to get people to think in a new way about how data and software are redefining what it means to do science.” —Bill GaTES “I often tell people working in eScience that they aren’t in this field because they are visionaries or super-intelligent—it’s because they care about science The and they are alive now. It is about technology changing the world, and science taking advantage of it, to do more and do better.” —RhyS FRANCIS, AUSTRALIAN eRESEARCH INFRASTRUCTURE COUNCIL F OURTH “One of the greatest challenges for 21st-century science is how we respond to this new era of data-intensive -
It Is NOT Junk a Blog About Genomes, DNA, Evolution, Open Science, Baseball and Other Important Things
it is NOT junk a blog about genomes, DNA, evolution, open science, baseball and other important things The Past, Present and Future of Scholarly Publishing By MIC H A EL EISEN | Published: MA RC H 2 8 , 2 0 1 3 Search To search, type and hit enter I gave a talk last night at the Commonwealth Club in San Francisco about science publishing and PLoS. There will be an audio link soon, but, for the first time in my life, Michael Eisen I actually gave the talk (largely) from prepared remarks, so I thought I’d post it here. I'm a biologist at UC An audio recording of the talk with Q&A is available here. Berkeley and an Investigator of the —— Howard Hughes Medical Institute. I work primarily On January 6, 2011, 24 year old hacker and activist Aaron Swartz was arrested by on flies, and my research encompases police at the Massachusetts Institute of Technology for downloading several million evolution, development, genetics, articles from an online archive of research journals called JSTOR. genomics, chemical ecology and behavior. I am a strong proponent of After Swartz committed suicide earlier this year in the face of legal troubles arising open science, and a co-founder of the from this incident, questions were raised about why MIT, whose access to JSTOR he Public Library of Science. And most exploited, chose to pursue charges, and what motivated the US Department of Justice importantly, I am a Red Sox fan. (More to demand jail time for his transgression. about me here). -
Gene Co-Expression Network Mining Using Graph Sparsification
Gene Co-expression Network Mining Using Graph Sparsification THESIS Presented in Partial Fulfillment of the Requirements for the Degree Master of Science in the Graduate School of The Ohio State University By Jinchao Di Graduate Program in Electrical and Computer Engineering The Ohio State University 2013 Master’s Examination Committee: Dr. Kun Huang, Advisor Dr. Raghu Machiraju Dr. Yuejie Chi ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! Copyright by Jinchao Di 2013 ! ! Abstract Identifying and analyzing gene modules is important since it can help understand gene function globally and reveal the underlying molecular mechanism. In this thesis, we propose a method combining local graph sparsification and a gene similarity measurement method TOM. This method can detect gene modules from a weighted gene co-expression network more e↵ectively since we set a local threshold which can detect clusters with di↵erent densities. In our algorithm, we only retain one edge for each gene, which can generate more balanced gene clusters. To estimate the e↵ectiveness of our algorithm we use DAVID to functionally evaluate the gene list for each module we detect and compare our results with some well known algorithms. The result of our algorithm shows better biological relevance than the compared methods and the number of the meaningful biological clusters is much larger than other methods, implying we discover some previously missed gene clusters. Moreover, we carry out a robustness test by adding Gaussian noise with di↵erent variance to the expression data. We find that our algorithm is robust to noise. We also find that some hub genes considered as important genes could be artifacts. -
Jimmy Wales and Larry Sanger, It Is the Largest, Fastest-Growing and Most Popular General Reference Work Currently Available on the Internet
Tomasz „Polimerek” Ganicz Wikimedia Polska WikipediaWikipedia andand otherother WikimediaWikimedia projectsprojects WhatWhat isis Wikipedia?Wikipedia? „Imagine„Imagine aa worldworld inin whichwhich everyevery singlesingle humanhuman beingbeing cancan freelyfreely shareshare inin thethe sumsum ofof allall knowledge.knowledge. That'sThat's ourour commitment.”commitment.” JimmyJimmy „Jimbo”„Jimbo” Wales Wales –– founder founder ofof WikipediaWikipedia As defined by itself: Wikipedia is a free multilingual, open content encyclopedia project operated by the non-profit Wikimedia Foundation. Its name is a blend of the words wiki (a technology for creating collaborative websites) and encyclopedia. Launched in January 2001 by Jimmy Wales and Larry Sanger, it is the largest, fastest-growing and most popular general reference work currently available on the Internet. OpenOpen and and free free content content RichardRichard StallmanStallman definition definition of of free free software: software: „The„The wordword "free""free" inin ourour namename doesdoes notnot referrefer toto price;price; itit refersrefers toto freedom.freedom. First,First, thethe freedomfreedom toto copycopy aa programprogram andand redistributeredistribute itit toto youryour neighbors,neighbors, soso thatthat theythey cancan useuse itit asas wellwell asas you.you. Second,Second, thethe freedomfreedom toto changechange aa program,program, soso ththatat youyou cancan controlcontrol itit insteadinstead ofof itit controllingcontrolling you;you; forfor this,this, thethe sourcesource -
RASLAN 2017 Recent Advances in Slavonic Natural Language Processing
RASLAN 2017 Recent Advances in Slavonic Natural Language Processing A. Horák, P. Rychlý, A. Rambousek (Eds.) RASLAN 2017 Recent Advances in Slavonic Natural Language Processing Eleventh Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2017 Karlova Studánka, Czech Republic, December 1–3, 2017 Proceedings Tribun EU 2017 Proceedings Editors Aleš Horák Faculty of Informatics, Masaryk University Department of Information Technologies Botanická 68a CZ-602 00 Brno, Czech Republic Email: [email protected] Pavel Rychlý Faculty of Informatics, Masaryk University Department of Information Technologies Botanická 68a CZ-602 00 Brno, Czech Republic Email: [email protected] Adam Rambousek Faculty of Informatics, Masaryk University Department of Information Technologies Botanická 68a CZ-602 00 Brno, Czech Republic Email: [email protected] This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the Czech Copyright Law, in its current version, and permission for use must always be obtained from Tribun EU. Violations are liable for prosecution under the Czech Copyright Law. Editors © Aleš Horák, 2017; Pavel Rychlý, 2017; Adam Rambousek, 2017 Typography © Adam Rambousek, 2017 Cover © Petr Sojka, 2010 This edition © Tribun EU, Brno, 2017 ISBN 978-80-263-1340-3 ISSN 2336-4289 Preface This volume contains the Proceedings of the Eleventh Workshop on Recent Advances in Slavonic Natural Language Processing (RASLAN 2017) held on December 1st–3rd 2017 in Karlova Studánka, Sporthotel Kurzovní, Jeseníky, Czech Republic.