It Is NOT Junk a Blog About Genomes, DNA, Evolution, Open Science, Baseball and Other Important Things
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UC Santa Barbara UC Santa Barbara Electronic Theses and Dissertations
UC Santa Barbara UC Santa Barbara Electronic Theses and Dissertations Title A Web of Extended Metaphors in the Guerilla Open Access Manifesto of Aaron Swartz Permalink https://escholarship.org/uc/item/6w76f8x7 Author Swift, Kathy Publication Date 2017 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA Santa Barbara A Web of Extended Metaphors in the Guerilla Open Access Manifesto of Aaron Swartz A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Education by Kathleen Anne Swift Committee in charge: Professor Richard Duran, Chair Professor Diana Arya Professor William Robinson September 2017 The dissertation of Kathleen Anne Swift is approved. ................................................................................................................................ Diana Arya ................................................................................................................................ William Robinson ................................................................................................................................ Richard Duran, Committee Chair June 2017 A Web of Extended Metaphors in the Guerilla Open Access Manifesto of Aaron Swartz Copyright © 2017 by Kathleen Anne Swift iii ACKNOWLEDGEMENTS I would like to thank the members of my committee for their advice and patience as I worked on gathering and analyzing the copious amounts of research necessary to -
Genius and the Soil
Genius and the soil DIGITAL COMMONS DIGITAL State and corporate interests have sought to crack talk in terms of protecting the interests of innovative individuals: authors, down on the power to share information digitally. But musicians, and scholars. To give just one could the new technologies point towards a more example, the Motion Picture Association of America, supported by some of the democratic model of creativity, asks JONATHAN GRAY biggest players in the film industry – Disney, Paramount, Sony, 20th Century ho can share what on from the 18th and 19th centuries. Reacting Fox, Universal and Warner Brothers – the internet? There is an against models of literary and artistic claims to pursue ‘commonsense solutions’ increasing awareness of creation that privileged imitation of the that ‘[protect] the rights of all who make debates around protected classics and striving towards perfection something of value with their minds, their material being shared within an established tradition, this period passion and their unique creative vision’. online through high profile court cases and saw a general turn towards the individual This notion of the individual controversies in the news, through things genius who broke previous rules and innovator, the lone pioneer breaking rules like the Pirate Bay, Wikileaks, or the recent invented new ones. Through this new and creating new paradigms, is only one tragic case of Aaron Swartz (see box, right). aesthetic frame, the world was divided side of the romantic story about literary But, stepping back from questions around into visionary and rebellious pioneers and creativity. The other side (perhaps less the law and its implementation in these slavish imitators. -
Report to the President: MIT and the Prosecution of Aaron Swartz
Report to the President MIT and the Prosecution of Aaron Swartz Review Panel Harold Abelson Peter A. Diamond Andrew Grosso Douglas W. Pfeiffer (support) July 26, 2013 © Copyright 2013, Massachusetts Institute of Technology This worK is licensed under a Creative Commons Attribution 3.0 Unported License. PRESIDENT REIF’S CHARGE TO HAL ABELSON | iii L. Rafael Reif, President 77 Massachusetts Avenue, Building 3-208 Cambridge, MA 02139-4307 U.S.A. Phone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
A Tribute to Aaron Swartz
A Tribute to Aaron Swartz Anupama Potluri February 1, 2013 1 History of Copyright Copyright was introduced for the first time in Great Britain in its modern form in 16th century. It came into existence after the invention of printing press. Its primary purpose was more of a censorship in terms of whether or not it can be printed and who and how many copies can be printed. The expansion of copyright and patents has increased with time and especially after the TRIPS arrangement which is part of the WTO negotiations. These have been introduced and/or expanded with a view to increase the profits of the corporations and to prevent the competitors from making progress based on the inventions in one corporation. 2 Do patents/copyrights help innovation Is patenting/copyrighting a good policy? What is the claim for its existence? The basic claim of proponents of patent/copyright policy is that by allowing inventors to profit from their inventions, it promotes innovation. That in the absence of such incentives, innovation will be slow and/or die out altogether. On the other hand, the fact that we have to make payments to the innovator means that any progress in improving the innovation is limited to those who can afford to pay. If we take the case of the Indian academia, capable people who are able to get their papers accepted are sometimes unable to pay for the exorbitant registration fees and certainly are not in a position to travel to other countries and stay there. The problem is even more clearly seen in the pharmaceutical industry. -
Gene Co-Expression Network Mining Using Graph Sparsification
Gene Co-expression Network Mining Using Graph Sparsification THESIS Presented in Partial Fulfillment of the Requirements for the Degree Master of Science in the Graduate School of The Ohio State University By Jinchao Di Graduate Program in Electrical and Computer Engineering The Ohio State University 2013 Master’s Examination Committee: Dr. Kun Huang, Advisor Dr. Raghu Machiraju Dr. Yuejie Chi ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! Copyright by Jinchao Di 2013 ! ! Abstract Identifying and analyzing gene modules is important since it can help understand gene function globally and reveal the underlying molecular mechanism. In this thesis, we propose a method combining local graph sparsification and a gene similarity measurement method TOM. This method can detect gene modules from a weighted gene co-expression network more e↵ectively since we set a local threshold which can detect clusters with di↵erent densities. In our algorithm, we only retain one edge for each gene, which can generate more balanced gene clusters. To estimate the e↵ectiveness of our algorithm we use DAVID to functionally evaluate the gene list for each module we detect and compare our results with some well known algorithms. The result of our algorithm shows better biological relevance than the compared methods and the number of the meaningful biological clusters is much larger than other methods, implying we discover some previously missed gene clusters. Moreover, we carry out a robustness test by adding Gaussian noise with di↵erent variance to the expression data. We find that our algorithm is robust to noise. We also find that some hub genes considered as important genes could be artifacts. -
Annual Report
[Credits] Licensed under Creative Commons Attribution license (CC BY 4.0). All text by John Hsieh and Georgia Young, except the Letter from the Executive Director, which is by John Sullivan. Images (name, license, and page location): Wouter Velhelst: cover image; Kori Feener, CC BY-SA 4.0: inside front cover, 2-4, 8, 14-15, 20-21, 23-25, 27-29, 32-33, 36, 40-41; Michele Kowal: 5; Anonymous, CC BY 3.0: 7, 16, 17; Ruben Rodriguez, CC BY-SA 4.0: 10, 13, 34-35; Anonymous, All rights reserved: 16 (top left); Pablo Marinero & Cecilia e. Camero, CC BY 3.0: 17; Free This report highlights activities Software Foundation, CC BY-SA 4.0: 18-19; Tracey Hughes, CC BY-SA 4.0: 30; Jose Cleto Hernandez Munoz, CC BY-SA 3.0: 31, Pixabay/stevepb, CC0: 37. and detailed financials for Fiscal Year 2016 Fonts: Letter Gothic by Roger Roberson; Orator by John Scheppler; Oswald by (October 1, 2015 - September 30, 2016) Vernon Adams, under the OFL; Seravek by Eric Olson; Jura by Daniel Johnson. Created using Inkscape, GIMP, and PDFsam. Designer: Tammy from Creative Joe. 1] LETTER FROM THE EXECUTIVE DIRECTOR 2] OUR MISSION 3] TECH 4] CAMPAIGNS 5] LIBREPLANET 2016 6] LICENSING & COMPLIANCE 7] CONFERENCES & EVENTS 7 8] LEADERSHIP & STAFF [CONTENTS] 9] FINANCIALS 9 10] OUR DONORS CONTENTS our most important [1] measure of success is support for the ideals of LETTER FROM free software... THE EXECUTIVE we have momentum DIRECTOR on our side. LETTER FROM THE 2016 EXECUTIVE DIRECTOR DEAR SUPPORTERS For almost 32 years, the FSF has inspired people around the Charity Navigator gave the FSF its highest rating — four stars — world to be passionate about computer user freedom as an ethical with an overall score of 99.57/100 and a perfect 100 in the issue, and provided vital tools to make the world a better place. -
Trevor John Hastie 1040 Campus Drive Stanford, CA 94305 Home Phone&FAX: (650) 326-0854
Trevor John Hastie 1040 Campus Drive Stanford, CA 94305 Home Phone&FAX: (650) 326-0854 Department of Statistics Born: June 27, 1953, South Africa Sequoia Hall Married, two children Stanford University U. S. citizen, S.A. citizen Stanford, CA 94305 E-Mail: [email protected] (650) 725-2231 Fax: 650/725-8977 Updated: June 22, 2021 Present Position 2013{ John A. Overdeck Professor of Mathematical Sciences, Stanford University. 2006{2009 Chair, Department of Statistics, Stanford University. 2005{2006 Associate Chair, Department of Statistics, Stanford University. 1999{ Professor, Statistics and Biostatistics Departments, Stanford University. Founder and co-director of Statistics department industrial affiliates program. 1994{1998 Associate Professor (tenured), Statistics and Biostatistics Departments, Stan- ford University. Research interests include nonparametric regression models, computer in- tensive data analysis techniques, statistical computing and graphics, and statistical consulting. Currently working on adaptive modeling and predic- tion procedures, signal and image modeling, and problems in bioinformatics with many more variables than observations. Education 1984 Stanford University, Stanford, California { Ph.D, Department of Statis- tics (Werner Stuetzle, advisor) 1979 University of Cape Town, Cape Town, South Africa { First Class Masters Degree in Statistics (June Juritz, advisor). 1976 Rhodes University, Grahamstown, South Africa { Bachelor of Science Honors Degree in Statistics. 1975 Rhodes University, Grahamstown, South Africa { Bachelor of Science Degree (cum laude) in Statistics, Computer Science and Mathematics. Awards and Honors 2020 \Statistician of the year" award, Chicago chapter ASA. 2020 Breiman award (senior) 2019 Recipient of the Sigillum Magnum, University of Bologna, Italy. 2019 Elected to The Royal Netherlands Academy of Arts and Science. 2019 Wald lecturer, JSM Denver. -
Ddawson2012.Pdf (700.6Kb)
Open Science and Crowd Science: Selected Sites and Resources Diane (DeDe) Dawson Natural Sciences Liaison Librarian University of Saskatchewan Saskatoon, Saskatchewan, Canada [email protected] Table of Contents Introduction Open Science Crowd Science Methods and Scope Open Science – Definitions and Principles Open Science – Open Lab Notebooks of Individuals and Lab Groups Open Science – Blogs Crowd Science – Projects for Individuals or Small Teams Crowd Science – Volunteer Distributed Computing Projects The Main Software Organizations Selected Projects Further Sources for Projects Selected Examples of Collaborative Science Sites for Specialists Main Software & Online Tools for Open Science Open Science Conferences and Community Conferences Further Reading/Viewing Videos Reports and White Papers Open e-Books Selected Essays, Articles, and Interviews References Introduction “To take full advantage of modern tools for the production of knowledge, we need to create an open scientific culture where as much information as possible is moved out of people’s heads and laboratories, and onto the network” (Nielsen 2011, p.183). New Internet technologies are radically enhancing the speed and ease of scholarly communications, and are providing opportunities for conducting and sharing research in new ways. This webliography explores the emerging “open science” and “crowd science” movements which are making use of these new opportunities to increase collaboration and openness in scientific research. The collaboration of many researchers on a project can enhance the rate of data-collection and analysis, and ignite new ideas. In addition, since there are more eyes to spot any inaccuracies or errors, collaborative research is likely to produce better quality results. Openness early in the research process alerts others to the work resulting in less duplication of efforts. -
Aaron's Law: Bringing Sensibility to the Computer Fraud and Abuse
AARON’S LAW: BRINGING SENSIBILITY TO THE COMPUTER FRAUD AND ABUSE ACT Mark Murfin* I. INTRODUCTION “Stealing is stealing, whether you use a computer command or a crowbar, and whether you take documents, data or dollars. It is equally harmful to the victim whether you sell what you have stolen or give it away.”1 With those words, U.S. Attorney for the District of Massachusetts Carmen Ortiz celebrated the indictment of twenty-four-year-old Aaron Swartz for allegedly downloading and distributing a substantial proportion of JSTOR’s digitized academic journal archive.2 Eighteen months later, Aaron Swartz tragically committed suicide.3 While the exact reasons for his actions will probably never be clear, his family claims that the prosecutors wanted to make an example out of Swartz, and the overzealous attack they mounted against him contributed to his depression and suicide.4 The case against him rested on the Computer Fraud and Abuse Act of 1986 (CFAA), a law enacted well before the coming of age of the Internet and the dawn of the information age.5 If given the maximum sentence allowed by the CFAA, Aaron Swartz would have spent thirty-five years in prison; more days than he had seen in his entire life.6 To an Internet prodigy who made significant contributions to it by the age of fourteen,7 this shadow of imprisonment might as well have been a death sentence. * Mark Murfin is a third-year law student expecting his J.D. from Southern Illinois University School of Law in May 2014. 1. -
Internetsownboy Transcri
[Music] >>A cofounder of the social, news and entertainment website Reddit has been found dead. >>He certainly was a prodigy, although he never kind of thought of himself like that. >>He was totally unexcited about starting businesses and making money. >>There's a profound sense of loss tonight in Highland Park, Aaron Swartz's hometown, as loved ones say goodbye to one of the Internet's brightest lights. >>Freedom, open access, and computer activists are mourning his loss. >>An astonishing intellect, if you talk to people who knew him. >>He was killed by the government, and MIT betrayed all of its basic principles. >>They wanted to make an example out of him, okay? >>Governments have an insatiable desire to control. >>He was potentially facing 35 years in prison and a one million dollar fine. >>Raising questions of prosecutorial zeal, and I would say even misconduct. Have you looked into that particular matter and reached any conclusions? >>Growing up, you know, I slowly had this process of realizing that all the things around me that people had told me were just the natural way things were, the way things always would be. They weren't natural at all, they were things that could be changed and they were things that, more importantly were wrong and should change. And once I realized that, there was really kind of no going back. >>Welcome to story reading time. The name of the book is "Paddington at the Fair". >>Well, he was born in Highland Park and grew up here. Aaron came from a family of three brothers, all extraordinarily bright. -
Enhancing Effectiveness of Team Science (PDF)
THE NATIONAL ACADEMIES PRESS This PDF is available at http://www.nap.edu/19007 SHARE Enhancing the Effectiveness of Team Science DETAILS 280 pages | 6 x 9 | PAPERBACK ISBN 978-0-309-31682-8 | DOI: 10.17226/19007 AUTHORS BUY THIS BOOK Nancy J. Cooke and Margaret L. Hilton, Editors; Committee on the Science of Team Science; Board on Behavioral, Cognitive, and Sensory Sciences; Division of Behavioral and Social Sciences and FIND RELATED TITLES Education; National Research Council Visit the National Academies Press at NAP.edu and login or register to get: – Access to free PDF downloads of thousands of scientific reports – 10% off the price of print titles – Email or social media notifications of new titles related to your interests – Special offers and discounts Distribution, posting, or copying of this PDF is strictly prohibited without written permission of the National Academies Press. (Request Permission) Unless otherwise indicated, all materials in this PDF are copyrighted by the National Academy of Sciences. Copyright © National Academy of Sciences. All rights reserved. Enhancing the Effectiveness of Team Science ENHANCING THE EFFECTIVENESS OF TEAM SCIENCE Nancy J. Cooke and Margaret L. Hilton, Editors Committee on the Science of Team Science Board on Behavioral, Cognitive, and Sensory Sciences Division of Behavioral and Social Sciences and Education Copyright © National Academy of Sciences. All rights reserved. Enhancing the Effectiveness of Team Science THE NATIONAL ACADEMIES PRESS 500 Fifth Street, NW Washington, DC 20001 NOTICE: The project that is the subject of this report was approved by the Governing Board of the National Research Council, whose members are drawn from the councils of the National Academy of Sciences, the National Academy of Engineering, and the Institute of Medicine. -
Top 10 Frequently Challenged Books Major Developments in World of E-Books
Libraries looking outward I Embracing transformation I School libraries fi ghting for resources SPECIAL ISSUE THE MAGAZINE OF THE AMERICAN LIBRARY ASSOCIATION 2014 Top 10 frequently challenged books Major developments in world of e-books Executive Summary 2 Introduction 8 Libraries and Community Engagement 11 Public Libraries 16 Ebooks and Copyright Issues 23 School Libraries 28 Academic Libraries 34 Social Networking 40 Library Construction and Renovation 45 Outreach and Diversity 50 Washington Scene 57 Intellectual Freedom 62 Sources 68 4 Contributors and Feedback 78 201 | The State of America’s Libraries America’s of The State | *A fully accessible version of this report is available on the American Library Association website. americanlibrariesmagazine.org 1 Libraries continue role as transformative institutions As libraries continue to transform to meet society’s changing needs, 90% of the respondents in an independent national survey said that libraries are important to the community, and 76% said that libraries are important to them and their families. 2014 | At the same time, school libraries continue to feel the combined pressures of recession-driven financial pressures and federal neglect, and school libraries in some districts and some states still face elimination or deprofessionalization of their programs. Some of the key findings of the national survey by the Pew Research Center’s Internet and American Life Project were detailed at the 2014 American Library Association Midwinter Meeting and Exhibits in Philadelphia in January. These included: . Ninety-six percent of those surveyed agreed that public libraries are important because The State of America’s Libraries America’s of The State they promote literacy and a love of reading.