2019 MSA Meeting Abstracts With
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Generic Hyper-Diversity in Stachybotriaceae
Persoonia 36, 2016: 156–246 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X691582 Generic hyper-diversity in Stachybotriaceae L. Lombard1, J. Houbraken1, C. Decock2, R.A. Samson1, M. Meijer1, M. Réblová3, J.Z. Groenewald1, P.W. Crous1,4,5,6 Key words Abstract The family Stachybotriaceae was recently introduced to include the genera Myrothecium, Peethambara and Stachybotrys. Members of this family include important plant and human pathogens, as well as several spe- biodegraders cies used in industrial and commercial applications as biodegraders and biocontrol agents. However, the generic generic concept boundaries in Stachybotriaceae are still poorly defined, as type material and sequence data are not readily avail- human and plant pathogens able for taxonomic studies. To address this issue, we performed multi-locus phylogenetic analyses using partial indoor mycobiota gene sequences of the 28S large subunit (LSU), the internal transcribed spacer regions and intervening 5.8S multi-gene phylogeny nrRNA (ITS), the RNA polymerase II second largest subunit (rpb2), calmodulin (cmdA), translation elongation species concept factor 1-alpha (tef1) and β-tubulin (tub2) for all available type and authentic strains. Supported by morphological taxonomy characters these data resolved 33 genera in the Stachybotriaceae. These included the nine already established genera Albosynnema, Alfaria, Didymostilbe, Myrothecium, Parasarcopodium, Peethambara, Septomyrothecium, Stachybotrys and Xepicula. At the same time the generic names Melanopsamma, Memnoniella and Virgatospora were resurrected. Phylogenetic inference further showed that both the genera Myrothecium and Stachybotrys are polyphyletic resulting in the introduction of 13 new genera with myrothecium-like morphology and eight new genera with stachybotrys-like morphology. -
Clonostachys Saulensis (Bionectriaceae, Hypocreales), a New Species from French Guiana
Clonostachys saulensis (Bionectriaceae, Hypocreales), a new species from French Guiana Christian LECHAT Abstract: Clonostachys saulensis sp. nov. is described and illustrated based on a collection on bark of dead Jacques FOURNIER liana in French Guiana. this species is placed in Clonostachys (= Bionectria) based on its clonostachys-like Delphine CHADULI asexual morph, ascomata not changing colour in 3% Koh or lactic acid and phylogenetic comparison of itS Laurence LESAGE-MEESSEN sequences with known species of Clonostachys. Clonostachys saulensis is primarily characterized by non- stromatic, smooth, pale brown, globose ascomata coated with a whitish powdery scurf from base up to half Anne FAVEL height and turning blackish upon drying. Based on comparison of morphological characteristics of sexual- asexual morphs and molecular data with known species, C. saulensis is proposed as a new species. Ascomycete.org, 11 (3) : 65–68 Keywords: Ascomycota, ribosomal DnA, taxonomy. Mise en ligne le 08/05/2019 10.25664/ART-0260 Résumé : Clonostachys saulensis sp. nov. est décrite et illustrée d’après une récolte effectuée sur écorce de liane morte en Guyane française. cette espèce est placée dans le genre Clonostachys (= Bionectria) d’après sa forme asexuée de type clonostachys, les ascomes ne changeant pas de couleur dans Koh à 3% ou dans l’acide lactique et la comparaison phylogénétique des séquences itS avec les espèces connues de Clonos- tachys. Clonostachys saulensis est principalement caractérisée par des ascomes globuleux, sans stroma, brun pâle, couverts d’une pellicule poudreuse blanchâtre de la base jusqu’à la moitié de la hauteur, devenant noi- râtres en séchant. en se fondant sur la comparaison des caractères morphologiques et des données molé- culaires avec les espèces connues, C. -
Illuminating Type Collections of Nectriaceous Fungi in Saccardo's
Persoonia 45, 2020: 221–249 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2020.45.09 Illuminating type collections of nectriaceous fungi in Saccardo’s fungarium N. Forin1, A. Vizzini 2,3,*, S. Nigris1,4, E. Ercole2, S. Voyron2,3, M. Girlanda2,3, B. Baldan1,4,* Key words Abstract Specimens of Nectria spp. and Nectriella rufofusca were obtained from the fungarium of Pier Andrea Saccardo, and investigated via a morphological and molecular approach based on MiSeq technology. ITS1 and ancient DNA ITS2 sequences were successfully obtained from 24 specimens identified as ‘Nectria’ sensu Saccardo (including Ascomycota 20 types) and from the type specimen of Nectriella rufofusca. For Nectria ambigua, N. radians and N. tjibodensis Hypocreales only the ITS1 sequence was recovered. On the basis of morphological and molecular analyses new nomenclatural Illumina combinations for Nectria albofimbriata, N. ambigua, N. ambigua var. pallens, N. granuligera, N. peziza subsp. ribosomal sequences reyesiana, N. radians, N. squamuligera, N. tjibodensis and new synonymies for N. congesta, N. flageoletiana, Sordariomycetes N. phyllostachydis, N. sordescens and N. tjibodensis var. crebrior are proposed. Furthermore, the current classifi- cation is confirmed for Nectria coronata, N. cyanostoma, N. dolichospora, N. illudens, N. leucotricha, N. mantuana, N. raripila and Nectriella rufofusca. This is the first time that these more than 100-yr-old specimens are subjected to molecular analysis, thereby providing important new DNA sequence data authentic for these names. Article info Received: 25 June 2020; Accepted: 21 September 2020; Published: 23 November 2020. INTRODUCTION to orange or brown perithecia which do not change colour in 3 % potassium hydroxide (KOH) or 100 % lactic acid (LA) Nectria, typified with N. -
©2015 Stephen J. Miller ALL RIGHTS RESERVED
©2015 Stephen J. Miller ALL RIGHTS RESERVED USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS. By STEPHEN J MILLER A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Dr. Ning Zhang And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey October 2015 ABSTRACT OF THE DISSERTATION USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS BY STEPHEN J MILLER Dissertation Director: Dr. Ning Zhang Fungi are the second largest kingdom of eukaryotic life, composed of diverse and ecologically important organisms with pivotal roles and functions, such as decomposers, pathogens, and mutualistic symbionts. Fungal endophyte studies have increased rapidly over the past decade, using traditional culturing or by utilizing Next Generation Sequencing (NGS) to recover fastidious or rare taxa. Despite increasing interest in fungal endophytes, there is still an enormous amount of ecological diversity that remains poorly understood. In this dissertation, I explore the fungal endophyte biodiversity associated within two plant hosts (Cornus L. species) and (Panicum virgatum L.), create a NGS pipeline, facilitating comparison between traditional culturing method and culture- independent metagenomic method. The diversity and functions of fungal endophytes inhabiting leaves of woody plants in the temperate region are not well understood. I explored the fungal biodiversity in native Cornus species of North American and Japan using traditional culturing ii techniques. Samples were collected from regions with similar climate and comparison of fungi was done using two years of collection data. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Natasha Final 1202.Pdf (4.528Mb)
University of São Paulo “Luiz de Queiroz” College of Agriculture Advances in Metarhizium blastospores production and formulation and transcriptome studies of the yeast and filamentous growth Natasha Sant´Anna Iwanicki Thesis presented to obtain the degreee of Doctor in Science. Area: Entomology Piracicaba 2020 UNIVERSITY OF COPENHAGEN FACULTY OF SCIENCE Advances in Metarhizium blastospores production and formulation and transcriptome studies of the yeast and filamentous growth PhD THESIS 2020 – Natasha Sant´Anna Iwanicki Natasha Sant´Anna Iwanicki Agronomic Engineer Advances in Metarhizium blastospores production and formulation and transcriptome studies of the yeast and filamentous growth Advisors: Prof. Dr. ITALO DELALIBERA JUNIOR Prof. PhD and Dr. agro JØRGEN EILENBERG Co-advisor for transcriptomic studies: Associate professor PhD HENRIK H. DE FINE LICHT Thesis presented to obtain the double-degreee of Doctor in Science of the University of São Paulo and PhD at University of Copenhagen. Area: Entomology Piracicaba 2020 2 Dados Internacionais de Catalogação na Publicação DIVISÃO DE BIBLIOTECA – DIBD/ESALQ/USP Iwanicki, Natasha Sant´Anna Advances in Metarhizium blastospores production and formulation and transcriptome studies of the yeast and filamentous growth / Natasha Sant´Anna Iwanicki. - - Piracicaba, 2020. 248 p. Tese (Doutorado) - - USP / Escola Superior de Agricultura “Luiz de Queiroz”. 1. Blastosporos 2. Fermentação líquida 3. Dimorfismo fúngico 4. Fungos entomopatogênicos I. Título 3 4 ACKNOWLEDGMENTS First, I would like to thank my supervisors, Prof. Italo Delalibera Júnior and Prof. Jørgen Eilenberg for their confidence in my potential as a student, for the opportunities they gave me and the knowledge they shared, for their guidance and friendship over these years. I also thank my co-advisors, Prof. -
The Ascomycota
Papers and Proceedings of the Royal Society of Tasmania, Volume 139, 2005 49 A PRELIMINARY CENSUS OF THE MACROFUNGI OF MT WELLINGTON, TASMANIA – THE ASCOMYCOTA by Genevieve M. Gates and David A. Ratkowsky (with one appendix) Gates, G. M. & Ratkowsky, D. A. 2005 (16:xii): A preliminary census of the macrofungi of Mt Wellington, Tasmania – the Ascomycota. Papers and Proceedings of the Royal Society of Tasmania 139: 49–52. ISSN 0080-4703. School of Plant Science, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia (GMG*); School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tasmania 7001, Australia (DAR). *Author for correspondence. This work continues the process of documenting the macrofungi of Mt Wellington. Two earlier publications were concerned with the gilled and non-gilled Basidiomycota, respectively, excluding the sequestrate species. The present work deals with the non-sequestrate Ascomycota, of which 42 species were found on Mt Wellington. Key Words: Macrofungi, Mt Wellington (Tasmania), Ascomycota, cup fungi, disc fungi. INTRODUCTION For the purposes of this survey, all Ascomycota having a conspicuous fruiting body were considered, excluding Two earlier papers in the preliminary documentation of the endophytes. Material collected during forays was described macrofungi of Mt Wellington, Tasmania, were confined macroscopically shortly after collection, and examined to the ‘agarics’ (gilled fungi) and the non-gilled species, microscopically to obtain details such as the size of the -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
Evolution of Complex Fruiting-Body Morphologies in Homobasidiomycetes
Received 18April 2002 Accepted 26 June 2002 Publishedonline 12September 2002 Evolutionof complexfruiting-bo dymorpholog ies inhomobasidi omycetes David S.Hibbett * and Manfred Binder BiologyDepartment, Clark University, 950Main Street,Worcester, MA 01610,USA The fruiting bodiesof homobasidiomycetes include some of the most complex formsthat have evolved in thefungi, such as gilled mushrooms,bracket fungi andpuffballs (‘pileate-erect’) forms.Homobasidio- mycetesalso includerelatively simple crust-like‘ resupinate’forms, however, which accountfor ca. 13– 15% ofthedescribed species in thegroup. Resupinatehomobasidiomycetes have beeninterpreted either asa paraphyletic grade ofplesiomorphic formsor apolyphyletic assemblage ofreducedforms. The former view suggeststhat morphological evolutionin homobasidiomyceteshas beenmarked byindependentelab- oration in many clades,whereas the latter view suggeststhat parallel simplication has beena common modeof evolution.To infer patternsof morphological evolution in homobasidiomycetes,we constructed phylogenetic treesfrom adatasetof 481 speciesand performed ancestral statereconstruction (ASR) using parsimony andmaximum likelihood (ML)methods. ASR with both parsimony andML implies that the ancestorof the homobasidiomycetes was resupinate, and that therehave beenmultiple gains andlosses ofcomplex formsin thehomobasidiomycetes. We also usedML toaddresswhether there is anasymmetry in therate oftransformations betweensimple andcomplex forms.Models of morphological evolution inferredwith MLindicate that therate -
The Earliest Record of Fossil Solid-Wood-Borer Larvae—Immature Beetles in 99 Million-Year-Old Myanmar Amber
Palaeoentomology 004 (4): 390–404 ISSN 2624-2826 (print edition) https://www.mapress.com/j/pe/ PALAEOENTOMOLOGY Copyright © 2021 Magnolia Press Article ISSN 2624-2834 (online edition) PE https://doi.org/10.11646/palaeoentomology.4.4.14 http://zoobank.org/urn:lsid:zoobank.org:pub:9F96DA9A-E2F3-466A-A623-0D1D6689D345 The earliest record of fossil solid-wood-borer larvae—immature beetles in 99 million-year-old Myanmar amber CAROLIN HAUG1, 2, *, GIDEON T. HAUG1, ANA ZIPPEL1, SERITA VAN DER WAL1 & JOACHIM T. HAUG1, 2 1Ludwig-Maximilians-Universität München, Biocenter, Großhaderner Str. 2, 82152 Planegg-Martinsried, Germany 2GeoBio-Center at LMU, Richard-Wagner-Str. 10, 80333 München, Germany �[email protected]; https://orcid.org/0000-0001-9208-4229 �[email protected]; https://orcid.org/0000-0002-6963-5982 �[email protected]; https://orcid.org/0000-0002-6509-4445 �[email protected] https://orcid.org/0000-0002-7426-8777 �[email protected]; https://orcid.org/0000-0001-8254-8472 *Corresponding author Abstract different plants, including agriculturally important ones (e.g., Potts et al., 2010; Powney et al., 2019). On the Interactions between animals and plants represent an other hand, many representatives exploit different parts of important driver of evolution. Especially the group Insecta plants, often causing severe damage up to the loss of entire has an enormous impact on plants, e.g., by consuming them. crops (e.g., Metcalf, 1996; Evans et al., 2007; Oliveira et Among beetles, the larvae of different groups (Buprestidae, Cerambycidae, partly Eucnemidae) bore into wood and are al., 2014). -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades.