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Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes Author(S): Srikar Chamala, Nicolás García, Grant T
MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes Author(s): Srikar Chamala, Nicolás García, Grant T. Godden, Vivek Krishnakumar, Ingrid E. Jordon- Thaden, Riet De Smet, W. Brad Barbazuk, Douglas E. Soltis, and Pamela S. Soltis Source: Applications in Plant Sciences, 3(4) Published By: Botanical Society of America DOI: http://dx.doi.org/10.3732/apps.1400115 URL: http://www.bioone.org/doi/full/10.3732/apps.1400115 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. ApApplicatitionsons Applications in Plant Sciences 2015 3 ( 4 ): 1400115 inin PlPlant ScienSciencesces S OFTWARE NOTE M ARKERMINER 1.0: A NEW APPLICATION FOR PHYLOGENETIC 1 MARKER DEVELOPMENT USING ANGIOSPERM TRANSCRIPTOMES S RIKAR C HAMALA 2,12 , N ICOLÁS G ARCÍA 2,3,4 * , GRANT T . G ODDEN 2,3,5 * , V IVEK K RISHNAKUMAR 6 , I NGRID E. -
Flower Food Tissues As Reward for Pollinating Birds
ISSN 0373-580 X Bol. Soc. Argent. Bot. 37 (1-2): 71 - 77. 2002 FLOWER FOOD TISSUES AS REWARD FOR POLLINATING BIRDS G. G. ROITMAN' 3, A. N. SÉRSIC23, A. A. COCUCCI2 and N. H. MONTALDO1 Summary: Nectar is the reward regularly offered by flowers to their pollinating birds. Studies on pollination by birds have focused on nectar as a reward while alternative reward systems have been poorly studied. Previous reviews have shown the presence of food tissues that serve as nutritive rewards to different classes of pollinators. However, in a recent revision of plant-bird interactions, the existence of a solid reward for birds has been disregarded. In South America at least three cases of this very particular bird-flower Interaction have been recently studied. In this paper we describe the syndrome features (flower morphology, reward properties, position of the pollination unit, flower color display and common visitors), that deviate from the typical ornithophilous syndrome, and its possible origin is discussed. Key words: Flower, food reward, pollination, birds, syndrome, review. Resumen: Tejidos alimenticios florales como recompensa para las aves polinizadoras. El néctar es la recompensa típica que las flores ofrecen a las aves polinizadoras. Los estudios sobre ornitofilia se han concentrado en el néctar como recompensa, mientras que otras retribuciones alternativas fueron esca¬ samente analizadas. Revisiones previas han mostrado que la producción de tejidos alimenticios puede servir como recompensa para diferentes polinizadores, y al menos tres casos de esta particular interacción se estudiaron últimamente en América del Sur. Sin embargo, una revisión reciente sobre interacciones planta-ave descarta la presencia de recompensas sólidas. -
Towards Resolving Lamiales Relationships
Schäferhoff et al. BMC Evolutionary Biology 2010, 10:352 http://www.biomedcentral.com/1471-2148/10/352 RESEARCH ARTICLE Open Access Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences Bastian Schäferhoff1*, Andreas Fleischmann2, Eberhard Fischer3, Dirk C Albach4, Thomas Borsch5, Günther Heubl2, Kai F Müller1 Abstract Background: In the large angiosperm order Lamiales, a diverse array of highly specialized life strategies such as carnivory, parasitism, epiphytism, and desiccation tolerance occur, and some lineages possess drastically accelerated DNA substitutional rates or miniaturized genomes. However, understanding the evolution of these phenomena in the order, and clarifying borders of and relationships among lamialean families, has been hindered by largely unresolved trees in the past. Results: Our analysis of the rapidly evolving trnK/matK, trnL-F and rps16 chloroplast regions enabled us to infer more precise phylogenetic hypotheses for the Lamiales. Relationships among the nine first-branching families in the Lamiales tree are now resolved with very strong support. Subsequent to Plocospermataceae, a clade consisting of Carlemanniaceae plus Oleaceae branches, followed by Tetrachondraceae and a newly inferred clade composed of Gesneriaceae plus Calceolariaceae, which is also supported by morphological characters. Plantaginaceae (incl. Gratioleae) and Scrophulariaceae are well separated in the backbone grade; Lamiaceae and Verbenaceae appear in distant clades, while the recently described Linderniaceae are confirmed to be monophyletic and in an isolated position. Conclusions: Confidence about deep nodes of the Lamiales tree is an important step towards understanding the evolutionary diversification of a major clade of flowering plants. The degree of resolution obtained here now provides a first opportunity to discuss the evolution of morphological and biochemical traits in Lamiales. -
Horse Rock Ridge Douglas Goldenberg Eugene District BLM, 2890 Chad Drive, Eugene, OR 97408-7336
Horse Rock Ridge Douglas Goldenberg Eugene District BLM, 2890 Chad Drive, Eugene, OR 97408-7336 Fine-grained basaltic dikes resistant to weathering protrude from the surrounding terrain in Horse Rock Ridge RNA. Photo by Cheshire Mayrsohn. he grassy balds of Horse Rock Ridge Research Natural Area defined by their dominant grass species: blue wildrye (Elymus glaucus), (RNA) are found on ridges and south-facing slopes within Oregon fescue (Festuca roemeri), and Lemmon’s needlegrass Tthe Douglas fir forest of the Coburg Hills. These natural (Achnatherum lemmonii)/hairy racomitrium moss (Racomitrium grasslands in the foothills of the Cascades bordering the southern canescens) (Curtis 2003). Douglas fir (Pseudotsuga menziesii) and Willamette Valley have fascinated naturalists with their contrast to western hemlock (Tsuga heterophylla) dominate the forest, with an the surrounding forests. The RNA was established to protect these understory of Cascade Oregon grape (Berberis nervosa), salal meadows which owe their existence to thin soils associated with (Gaultheria shallon), and creeping snowberry (Symphoricarpos mollis). rock outcroppings. Surrounding old growth forest adds to the value The 378-acre RNA is located in Linn County, Section 1 of the Natural Area. Township 15 South Range 2 West, on land administered by the The Bureau of Land Management (BLM) recognized the site’s BLM Eugene District. A portion of the meadow extends onto botanical, wildlife, and scenic values by establishing it as an RNA/ adjacent Weyerhaeuser private land. The Nature Conservancy has ACEC in June 1995 (Eugene District Resource Management Plan recently acquired a conservation easement on 45 acres of the Weyer- 1995). It had previously been established as an Area of Critical haeuser property, providing protection for the rocky bald and a Environmental Concern (ACEC) in 1984. -
Lamiales – Synoptical Classification Vers
Lamiales – Synoptical classification vers. 2.6.2 (in prog.) Updated: 12 April, 2016 A Synoptical Classification of the Lamiales Version 2.6.2 (This is a working document) Compiled by Richard Olmstead With the help of: D. Albach, P. Beardsley, D. Bedigian, B. Bremer, P. Cantino, J. Chau, J. L. Clark, B. Drew, P. Garnock- Jones, S. Grose (Heydler), R. Harley, H.-D. Ihlenfeldt, B. Li, L. Lohmann, S. Mathews, L. McDade, K. Müller, E. Norman, N. O’Leary, B. Oxelman, J. Reveal, R. Scotland, J. Smith, D. Tank, E. Tripp, S. Wagstaff, E. Wallander, A. Weber, A. Wolfe, A. Wortley, N. Young, M. Zjhra, and many others [estimated 25 families, 1041 genera, and ca. 21,878 species in Lamiales] The goal of this project is to produce a working infraordinal classification of the Lamiales to genus with information on distribution and species richness. All recognized taxa will be clades; adherence to Linnaean ranks is optional. Synonymy is very incomplete (comprehensive synonymy is not a goal of the project, but could be incorporated). Although I anticipate producing a publishable version of this classification at a future date, my near- term goal is to produce a web-accessible version, which will be available to the public and which will be updated regularly through input from systematists familiar with taxa within the Lamiales. For further information on the project and to provide information for future versions, please contact R. Olmstead via email at [email protected], or by regular mail at: Department of Biology, Box 355325, University of Washington, Seattle WA 98195, USA. -
The Linderniaceae and Gratiolaceae Are Further Lineages Distinct from the Scrophulariaceae (Lamiales)
Research Paper 1 The Linderniaceae and Gratiolaceae are further Lineages Distinct from the Scrophulariaceae (Lamiales) R. Rahmanzadeh1, K. Müller2, E. Fischer3, D. Bartels1, and T. Borsch2 1 Institut für Molekulare Physiologie und Biotechnologie der Pflanzen, Universität Bonn, Kirschallee 1, 53115 Bonn, Germany 2 Nees-Institut für Biodiversität der Pflanzen, Universität Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany 3 Institut für Integrierte Naturwissenschaften ± Biologie, Universität Koblenz-Landau, Universitätsstraûe 1, 56070 Koblenz, Germany Received: July 14, 2004; Accepted: September 22, 2004 Abstract: The Lamiales are one of the largest orders of angio- Traditionally, Craterostigma, Lindernia and their relatives have sperms, with about 22000 species. The Scrophulariaceae, as been treated as members of the family Scrophulariaceae in the one of their most important families, has recently been shown order Lamiales (e.g., Takhtajan,1997). Although it is well estab- to be polyphyletic. As a consequence, this family was re-classi- lished that the Plocospermataceae and Oleaceae are their first fied and several groups of former scrophulariaceous genera branching families (Bremer et al., 2002; Hilu et al., 2003; Soltis now belong to different families, such as the Calceolariaceae, et al., 2000), little is known about the evolutionary diversifica- Plantaginaceae, or Phrymaceae. In the present study, relation- tion of most of the orders diversity. The Lamiales branching ships of the genera Craterostigma, Lindernia and its allies, hith- above the Plocospermataceae and Oleaceae are called ªcore erto classified within the Scrophulariaceae, were analyzed. Se- Lamialesº in the following text. The most recent classification quences of the chloroplast trnK intron and the matK gene by the Angiosperm Phylogeny Group (APG2, 2003) recognizes (~ 2.5 kb) were generated for representatives of all major line- 20 families. -
Contrasting Floral Morphology and Breeding Systems in Two Subspecies of Calceolaria Corymbosa in Central Chile
Gayana Bot. 75(1),75(1): 2018544-548, 2018. ISSN 0016-5301 Short communication Contrasting floral morphology and breeding systems in two subspecies of Calceolaria corymbosa in Central Chile Morfología floral y sistemas reproductivos contrastantes en dos subespecies de Calceolaria corymbosa en Chile central JANINNA CISTERNA1 & MAUREEN MURÚA*2,3 1Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile. 2Centro de Investigación en Recursos Naturales y Sustentabilidad (CIRENYS), Universidad Bernardo O’Higgins, Avenida Viel 1497, Santiago, Chile. 3Fundación Flores, Ministro Carvajal 30, Providencia, Santiago, Chile. *[email protected] RESUMEN En este estudio se caracterizó la morfología floral y se evaluaron aspectos básicos de la biología reproductiva en dos subespecies de Calceolaria corymbosa en Chile central. Nuestros resultados muestran que los rasgos de atracción de polinizadores fueron similares entre subespecies. No obstante, rasgos relacionados con la reproducción (e.g., hercogamia) podrían explicar las diferencias entre ellas. Adicionalmente, ambas subespecies mostraron diferentes estrategias reproductivas, donde C. corymbosa ssp. mimuloides fue una especie alógama, mientras que C. corymbosa ssp. santiaguina fue autocompatible y autogama parcial. En general, estos resultados sugieren que especies morfológicamente similares pueden presentar diferentes estrategias reproductivas posiblemente de acuerdo a su hábitat. Calceolaria is one of the most diverse genera in America, analysis, revealing a recent C. corymbosa species separation including 250 species distributed from Mexico to Patagonia (Cosacov et al. 2009). Here, we attempt to determine basic (Molau 1988). In Chile, it is represented by approximately aspects of their reproductive biology and characterize some 60 species, including herbs, scrub or subshrub, annual or floral traits that may be important for plant reproduction in perennial with opposite, whole or split leaves growing from two C. -
A Survey of Tricolpate (Eudicot) Phylogenetic Relationships1
American Journal of Botany 91(10): 1627±1644. 2004. A SURVEY OF TRICOLPATE (EUDICOT) PHYLOGENETIC RELATIONSHIPS1 WALTER S. JUDD2,4 AND RICHARD G. OLMSTEAD3 2Department of Botany, University of Florida, Gainesville, Florida 32611 USA; and 3Department of Biology, University of Washington, Seattle, Washington 98195 USA The phylogenetic structure of the tricolpate clade (or eudicots) is presented through a survey of their major subclades, each of which is brie¯y characterized. The tricolpate clade was ®rst recognized in 1989 and has received extensive phylogenetic study. Its major subclades, recognized at ordinal and familial ranks, are now apparent. Ordinal and many other suprafamilial clades are brie¯y diag- nosed, i.e., the putative phenotypic synapomorphies for each major clade of tricolpates are listed, and the support for the monophyly of each clade is assessed, mainly through citation of the pertinent molecular phylogenetic literature. The classi®cation of the Angiosperm Phylogeny Group (APG II) expresses the current state of our knowledge of phylogenetic relationships among tricolpates, and many of the major tricolpate clades can be diagnosed morphologically. Key words: angiosperms; eudicots; tricolpates. Angiosperms traditionally have been divided into two pri- 1992a; Chase et al., 1993; Doyle et al., 1994; Soltis et al., mary groups based on the presence of a single cotyledon 1997, 2000, 2003; KaÈllersjoÈ et al., 1998; Nandi et al., 1998; (monocotyledons, monocots) or two cotyledons (dicotyledons, Hoot et al., 1999; Savolainen et al., 2000a, b; Hilu et al., 2003; dicots). A series of additional diagnostic traits made this di- Zanis et al., 2003; Kim et al., 2004). This clade was ®rst called vision useful and has accounted for the long recognition of the tricolpates (Donoghue and Doyle, 1989), but the name these groups in ¯owering plant classi®cations. -
A Checklist of the Vascular Plants in Abbott Creek 1 Research Natural Area, Oregon
34 PNW-341 October 1979 A CHECKLIST OF THE VASCULAR PLANTS IN ABBOTT CREEK 1 RESEARCH NATURAL AREA, OREGON by Rod Mitchell, Colorado Womens College, Denver, Colorado ABSTRACT This paper is a checklist of 277 vascular plant taxa that have been collected or encountered in Abbott Creek Research Natural Area, Oregon; a brief descrip- tion of five forested and two nonforested vegetation types is included. KEYWORDS: Vascular plants, checklists (vascular plants), Oregon (Abbott Creek Research Natural Area) INTRODUCTION Abbott Creek Research Natural Area is located 19 km (12 miles) west of Crater Lake National Park in the Rogue River National Forest of southern Oregon (fig. 1). This Research Natural Area was established on November 18, 1946, as representative of the southwestern Oregon, Sierra-type mixed conifer forests and specifically because it contained excellent stands of sugar pine (Pinus lambertiana) (Franklin et al. 1972). The purpose of this note is to document the vascular flora of this Research Natural Area (RNA) to aid future scientific research (Franklin 1970, Moir 1972) and to complement a previous study of forest community composition in the Research Natural Area (Mitchell and Moir 1976). Roseburg Crater Lake ABBOTT I , National CREEK ® j Park RNA Figure 1.--Location of Abbott Creek Research Natural Area. Medford Klamath 15 Falls OREGON CALIFORNIA 1 This work was supported by a contract from the Pacific Northwest Forest and Range Experiment Station and the Pacific Northwest Natural Area Committee. 1111111111111111111111.1.111 AGRICULTURE I FOREST SERVICE STUDY AREA Abbott Creek Research Natural Area is located in Douglas and Jackson Counties, and has a total area of 1 076 ha (2,660 acres). -
Download Flowering Plants of the Rough & Ready Creek Watershed List
FERNS & FERN ALLIES: DENNSTAEDTIACEAE BRACKEN FAMILY 1. Pteridium aquilinum var. pubescens Western Bracken Fern DRYOPTERIDACEAE WOOD FERN FAMILY Flowering Plants of the Rough & Ready Creek 2. Polystichum imbricans ssp. imbricans Imbricated or Narrow-leaved Sword Fern —Feb. 2015 revision of nomenclature based on the Watershed 3. Polystichum munitum Common Swordfern most current, third, Angiosperm Phylogeny Group (APG3) treatment of classification. Previously used names shown in EQUISETACEAE HORSETAIL FAMILY (parenthesizes). 4. Equisetum laevigatum Smooth Scouring Rush This plant list was originally a compilation of a variety of Rough and Ready area plant lists--compiled by Karen Phillips and Wendell Wood. Lists include POLYPODIACEAE POLYPODY FAMILY species contained in Barbara Ullian's "Preliminary Flora - Rough & Ready Creek" 5. Polypodium glycyrrhiza Licorice Fern (1994) which includes species recorded by Mary Paetzel and Mike Anderson. Other Rough and Ready lists were previously contributed by Veva Stansell, PTERIDACEAE BRAKE FAMILY Robin Taylor-Davenport and Jill Pade. Additionally, species were added as 6. Adiantum aleuticum (pedatum) Five-fingered Fern or Maidenhair Fern contained on The Nature Conservancy preserve’s 2007 list, and species identified in 2008-2009 for the Medford Dist. BLM’s Rough and Ready 7. Aspidotis densa Indian’s Dream ACEC by botanical contractors: Scot Loring, Josh Paque and Pete Kaplowe. 8. Pentagramma triangularis ssp. triangularis Goldback Fern Finally, Wendell Wood has added additional species he has personally found and identified in the Rough and Ready watershed prior to 2015. GYMNOSPERMS: CUPRESSACEAE CYPRESS FAMILY A few species on previous lists are shown separately after the end of this list, if they are not shown as occurring in Josephine Co. -
Self-Compatibility Not Associated with Morphological Or Genetic Diversity Reduction in Oil-Rewarding Calceolaria Species
plants Article Self-Compatibility Not Associated with Morphological or Genetic Diversity Reduction in Oil-Rewarding Calceolaria Species 1,2, 3, 2, Maureen Murúa * , Anahí Espíndola y and Fernanda Pérez y 1 Centro GEMA, Genómica, Ecología y Medio Ambiente, Facultad de Estudios Interdisciplinarios, Universidad Mayor, Camino La Pirámide 5750, Santiago 8580745, Chile 2 Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114-D, Santiago 8331150, Chile; [email protected] 3 Department of Entomology, Plant Sciences Building 3138, University of Maryland, College Park, MD 20742-4454, USA; [email protected] * Correspondence: [email protected] These authors share last authorship. y Received: 20 August 2020; Accepted: 9 October 2020; Published: 16 October 2020 Abstract: One of the most common evolutionary transitions in angiosperms is the reproductive change from outcrossing to selfing, commonly associated with changes in floral biology and genetic diversity. Here, we aim to test whether self-compatibility leads to a reduction of floral traits and genetic diversity. For this, we experimentally estimate levels of self-compatibility, measure three floral traits and estimate four genetic diversity parameters using nine microsatellites in nine Calceolaria species. Our analysis indicated that four of the study species were self-incompatible. In addition, we found that self-compatible species did not show a reduction in floral traits size, but rather displayed larger corolla and elaiophore areas. Our analyses of genetic diversity identified larger allele number and observed heterozygosity in selfers than in outcrossers, but did not find larger inbreeding in the self-compatible species. Even though our results contradict our expectations, in the case of Calceolaria, their high dependence on only two genera of oil-bees puts the genus in a vulnerable reproductive position, probably facilitating the evolution of reproductive assurance mechanisms in the absence of pollinators.