Cell Membrane Fluid–Mosaic Structure and Cancer Metastasis Garth L
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Bacterial Cell Membrane
BACTERIAL CELL MEMBRANE Dr. Rakesh Sharda Department of Veterinary Microbiology NDVSU College of Veterinary Sc. & A.H., MHOW CYTOPLASMIC MEMBRANE ➢The cytoplasmic membrane, also called a cell membrane or plasma membrane, is about 7 nanometers (nm; 1/1,000,000,000 m) thick. ➢It lies internal to the cell wall and encloses the cytoplasm of the bacterium. ➢It is the most dynamic structure of a prokaryotic cell. Structure of cell membrane ➢The structure of bacterial plasma membrane is that of unit membrane, i.e., a fluid phospholipid bilayer, composed of phospholipids (40%) and peripheral and integral proteins (60%) molecules. ➢The phospholipids of bacterial cell membranes do not contain sterols as in eukaryotes, but instead consist of saturated or monounsaturated fatty acids (rarely, polyunsaturated fatty acids). ➢Many bacteria contain sterol-like molecules called hopanoids. ➢The hopanoids most likely stabilize the bacterial cytoplasmic membrane. ➢The phospholipids are amphoteric molecules with a polar hydrophilic glycerol "head" attached via an ester bond to two non-polar hydrophobic fatty acid tails. ➢The phospholipid bilayer is arranged such that the polar ends of the molecules form the outermost and innermost surface of the membrane while the non-polar ends form the center of the membrane Fluid mosaic model ➢The plasma membrane contains proteins, sugars, and other lipids in addition to the phospholipids. ➢The model that describes the arrangement of these substances in lipid bilayer is called the fluid mosaic model ➢Dispersed within the bilayer are various structural and enzymatic proteins, which carry out most membrane functions. ➢Some membrane proteins are located and function on one side or another of the membrane (peripheral proteins). -
Endothelial Glycocalyx-Mediated Intercellular Interactions: Mechanisms and Implications for Health and Disease
ENDOTHELIAL GLYCOCALYX-MEDIATED INTERCELLULAR INTERACTIONS: MECHANISMS AND IMPLICATIONS FOR HEALTH AND DISEASE A Dissertation Presented By Solomon Arko Mensah To The Department of Bioengineering in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the field of Bioengineering Northeastern University Boston, Massachusetts October 2019 Northeastern University Graduate School of Engineering Dissertation Signature Page Dissertation Title: Endothelial Glycocalyx-Mediated Intercellular Interactions: Mechanisms and Implications for Health and Disease Author: Solomon Arko Mensah NUID: 001753218 Department: Bioengineering Approved for Dissertation Requirement for the Doctor of Philosophy Degree Dissertation Advisor Dr. Eno. E. Ebong, Associate Professor Print Name, Title Signature Date Dissertation Committee Member Dr. Arthur J. Coury, Distinguished Professor Print Name, Title Signature Date Dissertation Committee Member Dr. Rebecca L. Carrier, Professor Print Name, Title Signature Date Dissertation Committee Member Dr. James Monaghan, Associate Professor Print Name, Title Signature Date Department Chair Dr. Lee Makowski, Professor and Chair Print Name, Title Signature Date Associate Dean of the Graduate School Dr. Waleed Meleis, Interim Associate Dean Associate Dean for Graduate Education Signature Date ii ACKNOWLEDGEMENTS First of all, I will like to thank God for how far he has brought me. I am grateful to you, God, for sending your son JESUS CHRIST to die for my sins. I do not take this substitutionary death of CHRIST for granted, and I am forever indebted to you for my salvation. I would like to express my sincerest gratitude to my PI, Dr. Eno Essien Ebong, for the mentorship, leadership and unwaivering guidance through my academic career and personal life. Dr Ebong, you taught me everything I know about scientific research and communication and I will not be where I am today if not for your leadership. -
Spring 2013 Lecture 23
CHM333 LECTURES 23: 3/25/13 SPRING 2013 Professor Christine Hrycyna LIPIDS III EFFECT OF CHOLESTEROL ON MEMBRANES: - Bulky rigid molecule - Moderates fluidity of membranes – both increases and decreases o Cholesterol in membranes DECREASES fluidity because it is rigid o Prevents crystallization (making solid) of fatty acyl side chains by fitting between them. Disrupts close packing of fatty acyl chains. Therefore, INCREASED fluidity BIOLOGICAL MEMBRANES CONTAIN PROTEINS AS WELL AS LIPIDS: - Proteins are 20-80% of cell membrane - Rest is lipid or carbohydrate; supramolecular assembly of lipid, protein and carbohydrate - Proteins are also distributed asymmetrically - TWO classes of Membrane Proteins: o Integral Membrane Proteins o Peripheral Membrane Proteins 178 CHM333 LECTURES 23: 3/25/13 SPRING 2013 Professor Christine Hrycyna - INTEGRAL MEMBRANE PROTEINS o Located WITHIN the lipid bilayer o Usually span the bilayer one or more times – called transmembrane (TM) proteins o Hydrophobic amino acids interact with fatty acid chains in the hydrophobic core of the membrane o Can be removed from the membrane with detergents like SDS – need to disrupt the hydrophobic interactions § Membrane Disruption Animation: o http://www.youtube.com/watch?v=AHT37pvcjc0 o Function: § Transporters – moving molecules into or out of cells or cell membranes § Receptors – transmitting signals from outside of the cell to the inside - β Barrel Integral Membrane Proteins § Barrel-shaped membrane protein that is made up of antiparallel β-strands with hydrophilic (interior) and hydrophobic (facing lipid tails). § So far found only in outer membranes of Gram-negative bacteria, cell wall of Gram-positive bacteria, and outer membranes of mitochondria and chloroplasts. 179 CHM333 LECTURES 23: 3/25/13 SPRING 2013 Professor Christine Hrycyna - α-Helical Membrane Proteins - Can cross the membrane once or many times and have multiple transmembrane segments. -
The Endomembrane System and Proteins
Chapter 4 | Cell Structure 121 Endosymbiosis We have mentioned that both mitochondria and chloroplasts contain DNA and ribosomes. Have you wondered why? Strong evidence points to endosymbiosis as the explanation. Symbiosis is a relationship in which organisms from two separate species depend on each other for their survival. Endosymbiosis (endo- = “within”) is a mutually beneficial relationship in which one organism lives inside the other. Endosymbiotic relationships abound in nature. We have already mentioned that microbes that produce vitamin K live inside the human gut. This relationship is beneficial for us because we are unable to synthesize vitamin K. It is also beneficial for the microbes because they are protected from other organisms and from drying out, and they receive abundant food from the environment of the large intestine. Scientists have long noticed that bacteria, mitochondria, and chloroplasts are similar in size. We also know that bacteria have DNA and ribosomes, just like mitochondria and chloroplasts. Scientists believe that host cells and bacteria formed an endosymbiotic relationship when the host cells ingested both aerobic and autotrophic bacteria (cyanobacteria) but did not destroy them. Through many millions of years of evolution, these ingested bacteria became more specialized in their functions, with the aerobic bacteria becoming mitochondria and the autotrophic bacteria becoming chloroplasts. The Central Vacuole Previously, we mentioned vacuoles as essential components of plant cells. If you look at Figure 4.8b, you will see that plant cells each have a large central vacuole that occupies most of the cell's area. The central vacuole plays a key role in regulating the cell’s concentration of water in changing environmental conditions. -
Dysfunctional Mechanotransduction Through the YAP/TAZ/Hippo Pathway As a Feature of Chronic Disease
cells Review Dysfunctional Mechanotransduction through the YAP/TAZ/Hippo Pathway as a Feature of Chronic Disease 1, 2, 2,3, 4 Mathias Cobbaut y, Simge Karagil y, Lucrezia Bruno y, Maria Del Carmen Diaz de la Loza , Francesca E Mackenzie 3, Michael Stolinski 2 and Ahmed Elbediwy 2,* 1 Protein Phosphorylation Lab, Francis Crick Institute, London NW1 1AT, UK; [email protected] 2 Department of Biomolecular Sciences, Kingston University, Kingston-upon-Thames KT1 2EE, UK; [email protected] (S.K.); [email protected] (L.B.); [email protected] (M.S.) 3 Department of Chemical and Pharmaceutical Sciences, Kingston University, Kingston-upon-Thames KT1 2EE, UK; [email protected] 4 Epithelial Biology Lab, Francis Crick Institute, London NW1 1AT, UK; [email protected] * Correspondence: [email protected] These authors contribute equally to this work. y Received: 30 November 2019; Accepted: 4 January 2020; Published: 8 January 2020 Abstract: In order to ascertain their external environment, cells and tissues have the capability to sense and process a variety of stresses, including stretching and compression forces. These mechanical forces, as experienced by cells and tissues, are then converted into biochemical signals within the cell, leading to a number of cellular mechanisms being activated, including proliferation, differentiation and migration. If the conversion of mechanical cues into biochemical signals is perturbed in any way, then this can be potentially implicated in chronic disease development and processes such as neurological disorders, cancer and obesity. This review will focus on how the interplay between mechanotransduction, cellular structure, metabolism and signalling cascades led by the Hippo-YAP/TAZ axis can lead to a number of chronic diseases and suggest how we can target various pathways in order to design therapeutic targets for these debilitating diseases and conditions. -
Construction and Loss of Bacterial Flagellar Filaments
biomolecules Review Construction and Loss of Bacterial Flagellar Filaments Xiang-Yu Zhuang and Chien-Jung Lo * Department of Physics and Graduate Institute of Biophysics, National Central University, Taoyuan City 32001, Taiwan; [email protected] * Correspondence: [email protected] Received: 31 July 2020; Accepted: 4 November 2020; Published: 9 November 2020 Abstract: The bacterial flagellar filament is an extracellular tubular protein structure that acts as a propeller for bacterial swimming motility. It is connected to the membrane-anchored rotary bacterial flagellar motor through a short hook. The bacterial flagellar filament consists of approximately 20,000 flagellins and can be several micrometers long. In this article, we reviewed the experimental works and models of flagellar filament construction and the recent findings of flagellar filament ejection during the cell cycle. The length-dependent decay of flagellar filament growth data supports the injection-diffusion model. The decay of flagellar growth rate is due to reduced transportation of long-distance diffusion and jamming. However, the filament is not a permeant structure. Several bacterial species actively abandon their flagella under starvation. Flagellum is disassembled when the rod is broken, resulting in an ejection of the filament with a partial rod and hook. The inner membrane component is then diffused on the membrane before further breakdown. These new findings open a new field of bacterial macro-molecule assembly, disassembly, and signal transduction. Keywords: self-assembly; injection-diffusion model; flagellar ejection 1. Introduction Since Antonie van Leeuwenhoek observed animalcules by using his single-lens microscope in the 18th century, we have entered a new era of microbiology. -
IB DIPLOMA PROGRAMME Debora M
OXFORD IB PREPARED BIOLOGY IB DIPLOMA PROGRAMME Debora M. Primrose Contents Introduction iv 9 Plant biology (AHL) 1 Cell biology 9.1 Transport in the xylem of plants 103 9.2 Transport in the phloem of plants 107 1.1 Introduction to cells 2 9.3 Growth in plants 110 1.2 Ultrastructure of cells 4 9.4 Reproduction in plants 113 1.3 Membrane structure 6 1.4 Membrane transport 7 10 Genetics and evolution (AHL) 1.5 The origin of cells 9 10.1 Meiosis 117 1.6 Cell division 11 10.2 Inheritance 121 2 Molecular biology 10.3 Gene pools and speciation 125 2.1 Molecules to metabolism 14 11 Animal physiology (AHL) 2.2 Water 15 11.1 Antibody production and vaccination 128 2.3 Carbohydrates and lipids 16 11.2 Movement 133 2.4 Proteins 20 11.3 The kidney and osmoregulation 137 2.5 Enzymes 21 11.4 Sexual reproduction 141 2.6 Structure of DNA and RNA 23 2.7 DNA replication, transcription and translation 24 12 Data-based and practical questions 147 2.8 Cell respiration 26 2.9 Photosynthesis 28 A Neurobiology and behaviour 3 Genetics A.1 Neural development 157 A.2 The human brain 159 3.1 Genes 30 A.3 Perception of stimuli 161 3.2 Chromosomes 32 A.4 Innate and learned behaviour (AHL) 165 3.3 Meiosis 33 A.5 Neuropharmacology (AHL) 167 3.4 Inheritance 35 A.6 Ethology (AHL) 169 3.5 Genetic modification and biotechnology 37 B Biotechnology and bioinformatics 4 Ecology B.1 Microbiology: organisms in industry 172 4.1 Species, communities and ecosystems 40 B.2 Biotechnology in agriculture 174 4.2 Energy flow 43 B.3 Environmental protection 178 4.3 Carbon cycling 45 -
Improvement of Stem Cell-Derived Exosome Release E Ciency By
Improvement of stem cell-derived exosome release eciency by surface modied nanoparticles Dong Jun Park Yonsei University Wonju College of Medicine Wan Su Yun Yonsei University - Wonju Campus Woo Cheol Kim Yonsei University - Wonju Campus Jeong-Eun Park Yonsei University Wonju College of Medicine Su Hoon Lee Yonsei University Wonju College of Medicine Sunmok Ha Yonsei University College of Health Sciences Jin Sil Choi Yonsei University Wonju College of Medicine Jaehong Key Yonsei University - Wonju Campus YoungJoon Seo ( [email protected] ) Yonsei University - Wonju Campus https://orcid.org/0000-0002-2839-4676 Research Keywords: Autophagy, Mesenchymal stem cell-derived exosome, Positively charged nanoparticle, PLGA- PEI NPs, Rab7 Posted Date: November 5th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-42143/v3 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published on December 7th, 2020. See the published version at https://doi.org/10.1186/s12951-020-00739-7. Page 1/28 Abstract Background: Mesenchymal stem cells (MSCs) are pluripotent stromal cells that release extracellular vesicles (EVs). EVs contain various growth factors and antioxidants that can positively affect the surrounding cells. Nanoscale MSC-derived EVs, such as exosomes, have been developed as bio-stable nano-type materials. However, some issues, such as low yield and diculty in quantication, limit their use. We hypothesized that enhancing exosome production using nanoparticles would stimulate the release of intracellular molecules. Results: The aim of this study was to elucidate the molecular mechanisms of exosome generation by comparing the internalization of surface-modied, positively charged nanoparticles and exosome generation from MSCs. -
Lipid Rafts and Caveolae
46 Scaffolding SCAFFOLDING 1 NANOCELLBIOLOGY: CELL SURFACE PORTALS – CLATHRIN-COATED PITS, LIPID RAFTS, CAVEOLAE, AND POROSOMES A new field in biology, nanocellbiology (nano cell biol- About 280 years later, the transmission electron micro- ogy), has emerged from the successful use of atomic force scope was invented. Hence, on July 6, 1944 in Rockefeller microscopy, in combination with electron microscopy and Institute for Medical Research, New York, NY, Albert Claude other methods, in understanding the structure and dynamics made the first 13 micrographs taken from (cultured) cells. of cells and biomolecules at nanoscale resolution (1-3) (Fig- Thirty years later, in 1974, Albert Claude, Christian de Duve ure 1). and George Palade shared the Nobel Prize for Physiology or Human “love to knowledge” (from Bulgarian “lyuboz- Medicine. For the discovery of a new cell world, revealing nanie” - “lyubov”, love, “znanie”, knowledge) led to the membrane-bound organelles (mitochondria, endoplasmic re- whish to “see inside” the body of organisms. Initially, this ticulum, Golgi complex, lysosomes, caveolae) and cytoskel- was achieved by the dissection of human cadavers performed etal elements (filaments and microtubules). by the pioneer anatomist Andreas Vesalius. Later on the mi- The plasma membrane (plasmalemma, cell surface) is a croscope was invented. In 1609, Galileo was among the first complex lipoprotein structure surrounding the cells in all to use a telescope as an instrument to observe stars and plan- living organisms. Cells have constant need for the build- ets. The names „telescope“ and „microscope“ were coined for ing components of life: amino acids, lipids, carbohydrates, Galileo‘s instrument, in 1611. Illustrations of insects made and nucleic acids. -
Switch from Translation Initiation to Elongation Needs Not4 and Not5 Collaboration
bioRxiv preprint doi: https://doi.org/10.1101/850859; this version posted November 22, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Switch from translation initiation to elongation needs Not4 and Not5 collaboration George E Allen1°, Olesya O Panasenko1°, Zoltan Villanyi1,&, Marina Zagatti1, Benjamin Weiss1, 2 2 1* 5 Christine Polte , Zoya Ignatova , Martine A Collart 1Department of Microbiology and Molecular Medicine, Institute of Genetics and Genomics Geneva, Faculty of Medicine, University of Geneva, Switzerland 2Biochemistry and Molecular Biology, University of Hamburg, Germany °Equally contributing first authors 10 *Correspondence to: [email protected] &Current Address: Dept of Biochemistry and Molecular Biology, University of Szeged Abstract: Not4 and Not5 are crucial components of the Ccr4-Not complex with pivotal functions in mRNA metabolism. Both associate with ribosomes but mechanistic insights on their 15 function remain elusive. Here we determine that Not5 and Not4 synchronously impact translation initiation and Not5 alone alters translation elongation. Deletion of Not5 causes elongation defects in a codon-dependent fashion, increasing and decreasing the ribosome dwelling occupancy at minor and major codons, respectively. This larger difference in codons’ translation velocities alters translation globally and enables kinetically unfavorable processes 20 such as nascent chain deubiquitination to take place. In turn, this leads to abortive translation and favors protein aggregation. These findings highlight the global impact of Not4 and Not5 in controlling the speed of mRNA translation and transition from initiation to elongation. Summary: Not4 and Not5 regulate translation synchronously but distinguishably, facilitating 25 smooth transition from initiation to elongation Results and discussion The Ccr4-Not complex is a global regulator of mRNA metabolism in eukaryotic cells (for review see (1)). -
Cell Secretion and Membrane Fusion: Highly Significant Phenomena in the Life of a Cell
DISCOVERIES 2014, Jul -Sep, 2(3): e30 DOI: 10.15190/d.2014.22 Cell Secretion and Membrane Fusion EDITORIAL Cell secretion and membrane fusion: highly significant phenomena in the life of a cell Mircea Leabu 1,2,3,*, Garth L. Nicolson 4,* 1University of Medicine and Pharmacy “Carol Davila”, Department of Cellular and Molecular Medicine, 8, Eroilor Sanitari Blvd., 050474, Bucharest, Romania 2 “Victor Babes” National Institute of Pathology, 99101, Splaiul Independentei, 050096, Bucharest, Romania 3University of Bucharest, Research Center for Applied Ethics, 204, Splaiul Independentei, 060024, Bucharest, Romania 4Department of Molecular Pathology, Institute for Molecular Medicine, Huntington Beach, California, 92647 USA *Corresponding authors: Mircea Leabu, PhD , “Victor Babes” National Institute of Pathology, 99-101, Splaiul Independentei, 050096, Bucharest, Romania; E-mail: [email protected]; Garth L. Nicolson, Ph.D , The Institute for Molecular Medicine, P.O. Box 9355, S. Laguna Beach, CA 92652 USA. Email: [email protected] Submitted: Sept. 10, 2014; Revised: Sept. 14, 2014; Accepted: Sept. 17, 2014; Published: Sept. 18, 2014; Citation : Leabu M, Nicolson GL. Cell Secretion and membrane fusion: highly significant phenomena in the life of a cell. Discoveries 2014, Jul-Sep; 2(3): e30. DOI: 10.15190/d.2014.22 Keywords : cell secretion, membrane fusion, every cell’s existence, and they must be very well porosome, exosomes, electron microscopy, cancer, coordinated and controlled. Membrane trafficking, mathematical approach, secretory vesicle, science which involves vesicular budding of the source history membrane, directed transport and eventually fusion with the target membrane is a very specific process. All of these processes depend, in particular, on Introduction basic principals of biological membrane structure Is there any cell that does not secrete something and dynamics, a topic that was reviewed recently in necessary for maintenance of the organism? this journal 1. -
Structural Basis of Sterol Recognition and Nonvesicular Transport by Lipid
Structural basis of sterol recognition and nonvesicular PNAS PLUS transport by lipid transfer proteins anchored at membrane contact sites Junsen Tonga, Mohammad Kawsar Manika, and Young Jun Ima,1 aCollege of Pharmacy, Chonnam National University, Bukgu, Gwangju, 61186, Republic of Korea Edited by David W. Russell, University of Texas Southwestern Medical Center, Dallas, TX, and approved December 18, 2017 (received for review November 11, 2017) Membrane contact sites (MCSs) in eukaryotic cells are hotspots for roidogenic acute regulatory protein-related lipid transfer), PITP lipid exchange, which is essential for many biological functions, (phosphatidylinositol/phosphatidylcholine transfer protein), Bet_v1 including regulation of membrane properties and protein trafficking. (major pollen allergen from birch Betula verrucosa), PRELI (pro- Lipid transfer proteins anchored at membrane contact sites (LAMs) teins of relevant evolutionary and lymphoid interest), and LAMs contain sterol-specific lipid transfer domains [StARkin domain (SD)] (LTPs anchored at membrane contact sites) (9). and multiple targeting modules to specific membrane organelles. Membrane contact sites (MCSs) are closely apposed regions in Elucidating the structural mechanisms of targeting and ligand which two organellar membranes are in close proximity, typically recognition by LAMs is important for understanding the interorga- within a distance of 30 nm (7). The ER, a major site of lipid bio- nelle communication and exchange at MCSs. Here, we determined synthesis, makes contact with almost all types of subcellular or- the crystal structures of the yeast Lam6 pleckstrin homology (PH)-like ganelles (10). Oxysterol-binding proteins, which are conserved domain and the SDs of Lam2 and Lam4 in the apo form and in from yeast to humans, are suggested to have a role in the di- complex with ergosterol.